Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

34450859 .. 34455595

Gene Structure 4737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGAGTTGCGATGCTGAGATGGTGGGTTATGCTGTTTTTGAAGATTTCATTTTGTTCAACATTAGTGGCCCTACCTTTTCTCCTCAACTATGGGCTTATGATGTAAGTAGAAACAAATGGTACTTAGTCAGCGTCAACAACTTTGATTGCTATGGTTTGCGAGGACTGGCTGTGGTTCTAGAAAAGACTGTTTATGCCTTATCAAGCACATTGAGTCGCTCAGTTTTGGCATTATCTATTACAAGAGAGCAAATTGATGGACGAGATCTTGTGTTTACCTGTTCTCTACAGTCGGTGTTTACGTTGCCGTACACGGAGGTGCTTCCATTGGATGGAGACCGGGGAAGAGACCATTTGGTTCATTTGGGTAACCACGAGTTTTGTCTTGTCCAGAGTGGTGTCTGCTATGGTTATGTTGATTATCAACCTGTAAGACTCAGCATTTTTCAGCTTCTGGGAAAAAACTCGGTGAATATAACATATACAATTGACTATGAGGTGCCTCTTCAGGATTTTGAGCCATTTCATGTCAGACTCTGCTTCTCCCCGCCTGGTTGTGAGGATATTGTGTCAGAACGAGAAGACAATTCTGATATTAACTTCATCTTCGACCCGGCATTTCAAGTTGTCAAACCAGCCCCAGAAGAAGGGATTGCGACACTGTCTGAAGAAGAAGAAGAAGAAGAAGAAACAATAGTTGATACCAGTTCCTTCAAGCACTCAGCTTTGCTTAATATCATGCCCAACTACCCCCTTCCCTGCCACTGTGAGCTCAGTCGCAAGCTGATAGCCGTGCAAGGACGGTTAGATGTTTCAACCCATGCCCTATTTGTCGCCAACAACTTTGTGAAGTATTATTACCTTGTTCGTTTCATCCCAGGTGTAGAATCAATATACAAGTTTCATCAAGATTCTAGTGCTTCCTGCTGTATCAATGGCAATATGACAACAGTGGATGCATTTAAATCGGATGAATTGCATACACTCTCATGGGTAATAGAGAGTGTAGATGCTCAGGAATCTTCTCAGAAAGGGGTGACTGTATTAGTAACCGGACACTTGGTTGGAAACGACAACGTTCGAAGGAAATTTGCCCAAACATTCTTCCTAACTTCAAAGGAAGATGGGTACTTCATCTTACATGATATGTTTAGGTTTATTGAGGACAATGAATCATTACAAACAAACATCACTGATGAACAAGGTCACTCCATACGTGTAAGCAATTTGCCATATGATGCCACTGTTGAACAACTTGAGAAGGAATTCAAGAAATTTGGGTCTATTAAGCGGGACGGGATCCAAGTCAGAAGAAATGATAAGTGTGGATACAGTTTTGGCTTTGTTGAATTTGAAAGTGTAACTTCCATGCAACATGCAATTGAGGTATTGTCTTTTACCTTGTTTTCCACTCTTGAGGCTTCAACTATCACAATCGGGGATCGTAAAGCAGTGATTGAGAAAAAGAGAAACCCCCCTGAGGCGATGAACTTTTTCTATTTATGGTCTCTACAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

506

Amino Acids

57.53

Weight (kDa)

4.87

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	294 - 386	8e-15	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	405 - 465	1.3e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	332
AciI	CCGC	2 cut(s)	548, 1291
AclI	AACGTT	1 cut(s)	1077
AclWI	GGATC	3 cut(s)	1294, 1307, 1449
AcsI	RAATTY	4 cut(s)	1088, 1265, 1274, 1349
AcuI	CTGAAG	2 cut(s)	491, 687
AfaI	GTAC	3 cut(s)	122, 311, 1130
AfiI	CCNNNNNNNGG	3 cut(s)	332, 647, 1480
AflIII	ACRYGT	1 cut(s)	1216
AjnI	CCWGG	2 cut(s)	550, 877
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	451, 725, 772, 784
AluI	AGCT	4 cut(s)	451, 725, 772, 784
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	3 cut(s)	330, 342, 1512
AlwI	GGATC	3 cut(s)	1294, 1307, 1449
AlwNI	CAGNNNCTG	2 cut(s)	454, 537
AoxI	GGCC	1 cut(s)	67
ApoI	RAATTY	4 cut(s)	1088, 1265, 1274, 1349
Asp700I	GAANNNNTTC	2 cut(s)	1265, 1493
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	2 cut(s)	341, 614
AsuHPI	GGTGA	2 cut(s)	481, 1048
AsuII	TTCGAA	1 cut(s)	1081
AxyI	CCTNAGG	1 cut(s)	1479
BamHI	GGATCC	1 cut(s)	1299
BanI	GGYRCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	774
BarI	GAAGNNNNNNTAC	2 cut(s)	842, 874
BauI	CACGAG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	774
BccI	CCATC	4 cut(s)	13, 251, 326, 1118
BceAI	ACGGC	2 cut(s)	292, 776
BcgI	CGANNNNNNTGC	2 cut(s)	948, 982
BciT130I	CCWGG	2 cut(s)	552, 879
BciVI	GTATCC	1 cut(s)	1322
BcnI	CCSGG	2 cut(s)	341, 614
BcoDI	GTCTC	3 cut(s)	330, 342, 1512
BfaI	CTAG	2 cut(s)	179, 915
BfmI	CTRYAG	2 cut(s)	287, 1511
BfuI	GTATCC	1 cut(s)	1322
BglII	AGATCT	1 cut(s)	265
Bme1390I	CCNGG	4 cut(s)	341, 552, 614, 879
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	501, 1301
BmrFI	CCNGG	4 cut(s)	341, 552, 614, 879
BmsI	GCATC	3 cut(s)	946, 1000, 1228
BpiI	GAAGAC	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	1014
Bpu14I	TTCGAA	1 cut(s)	1081
BpuEI	CTTGAG	2 cut(s)	1277, 1436
BpuMI	CCSGG	2 cut(s)	341, 614
BsaAI	YACGTR	1 cut(s)	1217
BsaI	GGTCTC	3 cut(s)	330, 342, 1512
BsaJI	CCNNGG	2 cut(s)	340, 877
BsaWI	WCCGGW	1 cut(s)	1052
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 647, 1480
Bse1I	ACTGG	2 cut(s)	171, 705
Bse21I	CCTNAGG	1 cut(s)	1479
BseBI	CCWGG	2 cut(s)	552, 879
BseDI	CCNNGG	2 cut(s)	340, 877
BseGI	GGATG	4 cut(s)	337, 873, 961, 976
BseLI	CCNNNNNNNGG	3 cut(s)	332, 647, 1480
BseMII	CTCAG	8 cut(s)	6, 234, 451, 735, 787, 1028, 1040, 1470
BseNI	ACTGG	2 cut(s)	171, 705
BseRI	GAGGAG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	774
BsiSI	CCGG	3 cut(s)	340, 614, 1053
BslFI	GGGAC	1 cut(s)	1307
BslI	CCNNNNNNNGG	3 cut(s)	332, 647, 1480
BsmAI	GTCTC	3 cut(s)	330, 342, 1512
BsmFI	GGGAC	1 cut(s)	1307
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	3 cut(s)	330, 342, 1512
Bsp119I	TTCGAA	1 cut(s)	1081
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp143I	GATC	3 cut(s)	265, 1299, 1441
BspACI	CCGC	2 cut(s)	548, 1291
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	8 cut(s)	7, 233, 450, 734, 786, 1027, 1039, 1471
BspLI	GGNNCC	2 cut(s)	501, 1301
BspPI	GGATC	3 cut(s)	1294, 1307, 1449
BspT104I	TTCGAA	1 cut(s)	1081
BspT107I	GGYRCC	1 cut(s)	499
BspTNI	GGTCTC	3 cut(s)	330, 342, 1512
BsrI	ACTGG	2 cut(s)	171, 705
BssECI	CCNNGG	2 cut(s)	340, 877
BssMI	GATC	3 cut(s)	265, 1299, 1441
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst2UI	CCWGG	2 cut(s)	552, 879
Bst4CI	ACNGT	9 cut(s)	190, 291, 663, 767, 804, 952, 1042, 1246, 1334
Bst6I	CTCTTC	2 cut(s)	340, 510
BstBAI	YACGTR	1 cut(s)	1217
BstBI	TTCGAA	1 cut(s)	1081
BstC8I	GCNNGC	1 cut(s)	782
BstDEI	CTNAG	9 cut(s)	15, 124, 220, 437, 721, 773, 1014, 1026, 1479
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	4 cut(s)	337, 873, 961, 976
BstKTI	GATC	3 cut(s)	268, 1302, 1444
BstMAI	GTCTC	3 cut(s)	330, 342, 1512
BstMBI	GATC	3 cut(s)	265, 1299, 1441
BstNI	CCWGG	2 cut(s)	552, 879
BstNSI	RCATGY	1 cut(s)	1379
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	4 cut(s)	339, 550, 612, 877
BstSFI	CTRYAG	2 cut(s)	287, 1511
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	2 cut(s)	265, 1299
BstYI	RGATCY	2 cut(s)	265, 1299
Bsu36I	CCTNAGG	1 cut(s)	1479
BsuI	GTATCC	1 cut(s)	1322
BsuRI	GGCC	1 cut(s)	69
BtgZI	GCGATG	2 cut(s)	24, 1499
BtsCI	GGATG	4 cut(s)	337, 873, 961, 976
BtsI	GCAGTG	1 cut(s)	1458
BtsIMutI	CAGTG	6 cut(s)	659, 763, 957, 1191, 1242, 1458
Cac8I	GCNNGC	1 cut(s)	782
CaiI	CAGNNNCTG	2 cut(s)	454, 537
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	3 cut(s)	121, 310, 1129
CspCI	CAANNNNNGTGG	4 cut(s)	46, 81, 362, 397
CviAII	CATG	7 cut(s)	527, 739, 821, 990, 1142, 1369, 1376
CviQI	GTAC	3 cut(s)	121, 310, 1129
DdeI	CTNAG	9 cut(s)	15, 124, 220, 437, 721, 773, 1014, 1026, 1479
DpnI	GATC	3 cut(s)	267, 1301, 1443
DpnII	GATC	3 cut(s)	265, 1299, 1441
DraI	TTTAAA	1 cut(s)	964
Eam1104I	CTCTTC	2 cut(s)	340, 510
EarI	CTCTTC	2 cut(s)	340, 510
Ecl136II	GAGCTC	1 cut(s)	772
Eco24I	GRGCYC	1 cut(s)	774
Eco31I	GGTCTC	3 cut(s)	330, 342, 1512
Eco53kI	GAGCTC	1 cut(s)	772
Eco57I	CTGAAG	2 cut(s)	491, 687
Eco81I	CCTNAGG	1 cut(s)	1479
Eco91I	GGTNACC	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	772
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	1265
EcoRII	CCWGG	2 cut(s)	550, 877
EcoT22I	ATGCAT	1 cut(s)	961
EcoT38I	GRGCYC	1 cut(s)	774
FaeI	CATG	7 cut(s)	530, 742, 824, 993, 1145, 1372, 1379
FalI	AAGNNNNNCTT	2 cut(s)	1348, 1380
FaqI	GGGAC	1 cut(s)	1307
FatI	CATG	7 cut(s)	526, 738, 820, 989, 1141, 1368, 1375
FauI	CCCGC	2 cut(s)	555, 1284
FauNDI	CATATG	1 cut(s)	1234
FokI	GGATG	4 cut(s)	344, 860, 968, 983
FriOI	GRGCYC	1 cut(s)	774
FspBI	CTAG	2 cut(s)	179, 915
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	3 cut(s)	340, 614, 1053
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	7 cut(s)	530, 742, 824, 993, 1145, 1372, 1379
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	7 cut(s)	214, 435, 534, 887, 911, 1019, 1172
HpaII	CCGG	3 cut(s)	340, 614, 1053
HphI	GGTGA	2 cut(s)	481, 1048
Hpy166II	GTNNAC	4 cut(s)	136, 276, 300, 312
Hpy188I	TCNGA	7 cut(s)	533, 574, 592, 667, 970, 1029, 1310
Hpy188III	TCNNGA	7 cut(s)	179, 391, 509, 908, 1016, 1270, 1415
Hpy8I	GTNNAC	4 cut(s)	136, 276, 300, 312
HpyAV	CCTTC	5 cut(s)	641, 721, 764, 1077, 1255
HpyCH4III	ACNGT	9 cut(s)	190, 291, 663, 767, 804, 952, 1042, 1246, 1334
HpyCH4IV	ACGT	3 cut(s)	302, 1077, 1216
HpyCH4V	TGCA	5 cut(s)	796, 959, 979, 1372, 1379
HpyF3I	CTNAG	9 cut(s)	15, 124, 220, 437, 721, 773, 1014, 1026, 1479
HpySE526I	ACGT	3 cut(s)	302, 1077, 1216
Hsp92II	CATG	7 cut(s)	530, 742, 824, 993, 1145, 1372, 1379
Kzo9I	GATC	3 cut(s)	265, 1299, 1441
LweI	GCATC	3 cut(s)	946, 1000, 1228
MaeI	CTAG	2 cut(s)	179, 915
MaeII	ACGT	3 cut(s)	302, 1077, 1216
MaeIII	GTNAC	5 cut(s)	368, 1036, 1048, 1205, 1360
MalI	GATC	3 cut(s)	267, 1301, 1443
MboI	GATC	3 cut(s)	265, 1299, 1441
MfeI	CAATTG	2 cut(s)	486, 1380
MflI	RGATCY	2 cut(s)	265, 1299
MhlI	GDGCHC	1 cut(s)	774
MlyI	GAGTC	3 cut(s)	223, 429, 528
MmeI	TCCRAC	1 cut(s)	1045
Mph1103I	ATGCAT	1 cut(s)	961
MroXI	GAANNNNTTC	2 cut(s)	1265, 1493
MseI	TTAA	4 cut(s)	597, 732, 963, 1287
MslI	CAYNNNNRTG	2 cut(s)	317, 988
MspI	CCGG	3 cut(s)	340, 614, 1053
MspR9I	CCNGG	4 cut(s)	341, 552, 614, 879
MunI	CAATTG	2 cut(s)	486, 1380
MvaI	CCWGG	2 cut(s)	552, 879
NciI	CCSGG	2 cut(s)	341, 614
NdeI	CATATG	1 cut(s)	1234
NdeII	GATC	3 cut(s)	265, 1299, 1441
NlaIII	CATG	7 cut(s)	530, 742, 824, 993, 1145, 1372, 1379
NlaIV	GGNNCC	2 cut(s)	501, 1301
NmuCI	GTSAC	2 cut(s)	1036, 1205
NsiI	ATGCAT	1 cut(s)	961
NspI	RCATGY	1 cut(s)	1379
NspV	TTCGAA	1 cut(s)	1081
OliI	CACNNNNGTG	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PdmI	GAANNNNTTC	2 cut(s)	1265, 1493
PfeI	GAWTC	4 cut(s)	887, 911, 1019, 1172
PflFI	GACNNNGTC	1 cut(s)	661
PflMI	CCANNNNNTGG	1 cut(s)	332
PleI	GAGTC	3 cut(s)	222, 429, 528
PpsI	GAGTC	3 cut(s)	222, 429, 528
Ppu21I	YACGTR	1 cut(s)	1217
Psp124BI	GAGCTC	1 cut(s)	774
Psp1406I	AACGTT	1 cut(s)	1077
Psp6I	CCWGG	2 cut(s)	550, 877
PspEI	GGTNACC	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	550, 877
PspN4I	GGNNCC	2 cut(s)	501, 1301
PspPI	GGNCC	1 cut(s)	68
PstNI	CAGNNNCTG	2 cut(s)	454, 537
PsuI	RGATCY	2 cut(s)	265, 1299
PsyI	GACNNNGTC	1 cut(s)	661
RsaI	GTAC	3 cut(s)	122, 311, 1130
RsaNI	GTAC	3 cut(s)	121, 310, 1129
RseI	CAYNNNNRTG	2 cut(s)	317, 988
SacI	GAGCTC	1 cut(s)	774
SaqAI	TTAA	4 cut(s)	597, 732, 963, 1287
Sau3AI	GATC	3 cut(s)	265, 1299, 1441
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	3 cut(s)	223, 429, 528
ScrFI	CCNGG	4 cut(s)	341, 552, 614, 879
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	3 cut(s)	946, 1000, 1228
SfcI	CTRYAG	2 cut(s)	287, 1511
SfuI	TTCGAA	1 cut(s)	1081
SmiI	ATTTAAAT	1 cut(s)	964
SmiMI	CAYNNNNRTG	2 cut(s)	317, 988
SmlI	CTYRAG	2 cut(s)	1256, 1415
SmoI	CTYRAG	2 cut(s)	1256, 1415
SsiI	CCGC	2 cut(s)	548, 1291
SspMI	CTAG	2 cut(s)	179, 915
SstI	GAGCTC	1 cut(s)	774
StyD4I	CCNGG	4 cut(s)	339, 550, 612, 877
SwaI	ATTTAAAT	1 cut(s)	964
TaaI	ACNGT	9 cut(s)	190, 291, 663, 767, 804, 952, 1042, 1246, 1334
TaiI	ACGT	3 cut(s)	305, 1080, 1219
TaqI	TCGA	2 cut(s)	609, 1081
TfiI	GAWTC	4 cut(s)	887, 911, 1019, 1172
Tru1I	TTAA	4 cut(s)	597, 732, 963, 1287
Tru9I	TTAA	4 cut(s)	597, 732, 963, 1287
TscAI	CASTG	6 cut(s)	666, 770, 957, 1198, 1249, 1458
TseFI	GTSAC	2 cut(s)	1036, 1205
Tsp45I	GTSAC	2 cut(s)	1036, 1205
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	6 cut(s)	666, 770, 957, 1198, 1249, 1458
Tth111I	GACNNNGTC	1 cut(s)	661
Van91I	CCANNNNNTGG	1 cut(s)	332
XapI	RAATTY	4 cut(s)	1088, 1265, 1274, 1349
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	1379
XmnI	GAANNNNTTC	2 cut(s)	1265, 1493
XspI	CTAG	2 cut(s)	179, 915
Zsp2I	ATGCAT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.