RLG00000013443

Ras GTPase-activating protein-binding protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
31585464 .. 31589126
3663 bp
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UTR
Exon/CDS
Intron
RLM00000013443

Sequence Viewer

Length: 1632 bp
ATGCTTGGAGAACAAGCAACAGGAGAAGAAGCATTTGAATTTGTAGGACAGTTGAGTCAAAAGAAGTGGTGCCAACCCATTTCGTGGATGTTTTCTTCTTTGGCTACTACCACTTCTTGCAGTTCTTCCGAGTTGTGTCTATTGCCAGATGGTGGTCCTGAAGATTTTAAGATCGACGTTCCATTGCATGGATATATCTTCAACATCAGGACCAAAAAGGTGCGAAAAATGAAGCCGCCCAAGGCCTCCAAATGCTTTGGACATGTTGTATCTTTGAAAGGGGAGATTTATTTTATTACAGATCCATTCTGGTTAACTGGTGCACCAGACCTGTCTTTCGAGCAATATAATTCTGACAAAGATTCTTGGGAAACTCCGACACATTTTCCTCATATTGAGGGCATGAGTTGCAACGGTCAGATGGTGGCTATTGCCGTTTTCATAGTTGAGAACCATGAGTGCTATGGTATACGAGGAGTGGCTGTGGTTCTAGAAAAGACTATCTATGCCTTAACACACGTGTCATTTGACACAGTTTTGGCATTATCTATTACAAGGGAACAAGTTGATGGAGATCTTGTATTTACATGTTCTCTACACTCAGTGATTGAGTTGCCGTACATGGAGCTATTTCCATTGAGTGATGCAGGCCCGAGAAGCAGGCATTTGGTTCATTTGGGTAACCAGGAGTTTTGTCTTGTCCAGAGTGATCTCCTCTCTGGTTATAATGATCGTCAACCTATAAAACTCAGCATTATAAAGCTTGATATTGTGTTAAAAGAAGAAGACAAAAGTGATATTTTCTTCACATTCGACCCTGTTTGTGAGGATATTGTGTCAAAACAAGAAGACAAAAGTGATACTGACTTCACCTTTAACTCAGAATCTGAAGTTGTCAAACCAGTCCAAGAAGAAGAGATTGCGACCCTGCCAAAACGAGAAGAAACAATAGTCGATACCAGTTCCCTCAAGTGCTCGGCTTTGCTTAATATCAAGCCCAAAGATCCCCCTCCCTTCAACACTGAGGTCACTTCCAAGCTGATGGCCTTGCAAGAGTTAGATAGTTCTAGCCGTGCCCAACTTGTCGGCAACACCTTTGTGGAGTCTTATTACCATTTTCTTCGCCACGCCCCAGAAGATATGTACAAGTTTTATCAAGATTCTAGTGCTTCATATAATGGCAATATGATTACACCGGATGCAATTAAATCCATGAATGATGAATGTCGTACATGTGAAATAGAGAGTGTAGATGCTCAAGAATCTCCTCAGAAAGGGGTGACTGTATTAGTAACCGGATACTTGGTTGGAAACGACAACGTGGGAAGGAAATTTGCCCAAACATTCATCCTAGCTCCACAGGAAAAGGGGTACTTCATCTTCAAGGATATGTTTAGGTATATTAAGGACAGTGAATCATCACAAACAAACATCATTGATGAACAAGATTTGGAACAAGGATCAGTTGCAGAAAGTAATGTCGCATCCAGTCCTGTTCATGCTACCCAAGTGAGGAGGACAATATCTGCAATCACTGGCCACCCATCCCTTGGTTCTGCTGATCCATCTCTTGTACCAGAGGCTTCAGCTCCTAGTGATGATGCCAGCTTTGGAAAGGAGCAATTCTCATGA

Protein Analysis

544

Amino Acids

60.52

Weight (kDa)

4.75

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 362 - 467 4.3e-22 Nuclear transport factor 2 (NTF2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 726, 758
AasI GACNNNNNNGTC 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 69
AccB7I CCANNNNNTGG 4 cut(s) 84, 152, 188, 1550
AccI GTMKAC 1 cut(s) 469
AciI CCGC 1 cut(s) 236
AclWI GGATC 4 cut(s) 296, 998, 1468, 1556
AcoI YGGCCR 1 cut(s) 1537
AcsI RAATTY 2 cut(s) 38, 1331
AcuI CTGAAG 3 cut(s) 180, 909, 1569
AcvI CACGTG 1 cut(s) 520
AdeI CACNNNGTG 1 cut(s) 604
AfaI GTAC 5 cut(s) 620, 1145, 1231, 1373, 1575
AfiI CCNNNNNNNGG 6 cut(s) 84, 152, 188, 1274, 1512, 1550
AflIII ACRYGT 5 cut(s) 262, 517, 519, 587, 1232
AgsI TTSAA 5 cut(s) 38, 202, 277, 1018, 1384
AjnI CCWGG 1 cut(s) 684
AleI CACNNNNGTG 1 cut(s) 1097
AluBI AGCT 6 cut(s) 628, 763, 1039, 1355, 1589, 1608
AluI AGCT 6 cut(s) 628, 763, 1039, 1355, 1589, 1608
Alw21I GWGCWC 2 cut(s) 325, 977
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 4 cut(s) 296, 998, 1468, 1556
AlwNI CAGNNNCTG 1 cut(s) 887
Ama87I CYCGRG 1 cut(s) 652
AoxI GGCC 4 cut(s) 243, 649, 1044, 1537
ApaLI GTGCAC 1 cut(s) 321
ApoI RAATTY 2 cut(s) 38, 1331
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AspS9I GGNCC 3 cut(s) 155, 210, 650
AsuHPI GGTGA 2 cut(s) 862, 1291
AvaI CYCGRG 1 cut(s) 652
AvaII GGWCC 2 cut(s) 155, 210
BaeGI GKGCMC 2 cut(s) 325, 1078
BalI TGGCCA 1 cut(s) 1539
BanI GGYRCC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 1364, 1396
BbrPI CACGTG 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 792, 855
Bbv12I GWGCWC 2 cut(s) 325, 977
BccI CCATC 6 cut(s) 143, 415, 563, 1036, 1552, 1573
BceAI ACGGC 3 cut(s) 419, 601, 1056
BciT130I CCWGG 1 cut(s) 686
BciVI GTATCC 1 cut(s) 1292
BfaI CTAG 5 cut(s) 491, 1068, 1164, 1352, 1593
BfuI GTATCC 1 cut(s) 1292
BglII AGATCT 1 cut(s) 574
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 686
Bme18I GGWCC 2 cut(s) 155, 210
BmeT110I CYCGRG 1 cut(s) 652
BmgT120I GGNCC 3 cut(s) 155, 210, 650
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 686
BmsI GCATC 5 cut(s) 634, 1189, 1243, 1493, 1591
BpiI GAAGAC 2 cut(s) 792, 855
BplI GAGNNNNNCTC 1 cut(s) 1610
BpuEI CTTGAG 2 cut(s) 953, 1242
BsaAI YACGTR 1 cut(s) 520
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 240, 1549
BsaWI WCCGGW 2 cut(s) 1195, 1295
BsaXI ACNNNNNCTCC 4 cut(s) 468, 498, 564, 594
Bsc4I CCNNNNNNNGG 6 cut(s) 84, 152, 188, 1274, 1512, 1550
Bse1I ACTGG 5 cut(s) 322, 902, 960, 1488, 1540
Bse3DI GCAATG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 2 cut(s) 240, 1549
BseGI GGATG 5 cut(s) 93, 1204, 1347, 1484, 1544
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 6 cut(s) 84, 152, 188, 1274, 1512, 1550
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 5 cut(s) 615, 763, 894, 1014, 1283
BseNI ACTGG 5 cut(s) 322, 902, 960, 1488, 1540
BseRI GAGGAG 4 cut(s) 489, 704, 1257, 1528
BseSI GKGCMC 2 cut(s) 325, 1078
BshFI GGCC 4 cut(s) 245, 651, 1046, 1539
BshNI GGYRCC 1 cut(s) 69
BsiHKAI GWGCWC 2 cut(s) 325, 977
BsiHKCI CYCGRG 1 cut(s) 652
BsiSI CCGG 2 cut(s) 1196, 1296
BslI CCNNNNNNNGG 6 cut(s) 84, 152, 188, 1274, 1512, 1550
BsnI GGCC 4 cut(s) 245, 651, 1046, 1539
BsoBI CYCGRG 1 cut(s) 652
Bsp1286I GDGCHC 3 cut(s) 325, 977, 1078
Bsp1407I TGTACA 1 cut(s) 1143
Bsp143I GATC 8 cut(s) 171, 301, 574, 709, 730, 1003, 1460, 1561
BspACI CCGC 1 cut(s) 236
BspANI GGCC 4 cut(s) 245, 651, 1046, 1539
BspCNI CTCAG 5 cut(s) 614, 762, 893, 1015, 1282
BspHI TCATGA 1 cut(s) 1628
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 4 cut(s) 296, 998, 1468, 1556
BspT107I GGYRCC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 1143
BsrI ACTGG 5 cut(s) 322, 902, 960, 1488, 1540
BssECI CCNNGG 2 cut(s) 240, 1549
BssMI GATC 8 cut(s) 171, 301, 574, 709, 730, 1003, 1460, 1561
BssNAI GTATAC 1 cut(s) 470
BssT1I CCWWGG 2 cut(s) 240, 1549
Bst1107I GTATAC 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 5 cut(s) 51, 416, 535, 1285, 1412
Bst6I CTCTTC 1 cut(s) 909
BstAPI GCANNNNNTGC 1 cut(s) 408
BstAUI TGTACA 1 cut(s) 1143
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 3 cut(s) 649, 662, 1606
BstDEI CTNAG 5 cut(s) 601, 749, 880, 1023, 1269
BstEII GGTNACC 1 cut(s) 680
BstENI CCTNNNNNAGG 1 cut(s) 1272
BstF5I GGATG 5 cut(s) 93, 1204, 1347, 1484, 1544
BstKTI GATC 8 cut(s) 174, 304, 577, 712, 733, 1006, 1463, 1564
BstMBI GATC 8 cut(s) 171, 301, 574, 709, 730, 1003, 1460, 1561
BstMWI GCNNNNNNNGC 2 cut(s) 408, 657
BstNI CCWGG 1 cut(s) 686
BstNSI RCATGY 3 cut(s) 266, 591, 1236
BstPI GGTNACC 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 684
BstSLI GKGCMC 2 cut(s) 325, 1078
BstV2I GAAGAC 2 cut(s) 792, 855
BstX2I RGATCY 3 cut(s) 301, 574, 1003
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstYI RGATCY 3 cut(s) 301, 574, 1003
BstZ17I GTATAC 1 cut(s) 470
BsuI GTATCC 1 cut(s) 1292
BsuRI GGCC 4 cut(s) 245, 651, 1046, 1539
BtsCI GGATG 5 cut(s) 93, 1204, 1347, 1484, 1544
BtsIMutI CAGTG 4 cut(s) 609, 1020, 1417, 1533
Cac8I GCNNGC 3 cut(s) 649, 662, 1606
CaiI CAGNNNCTG 1 cut(s) 887
CciI TCATGA 1 cut(s) 1628
Cfr13I GGNCC 3 cut(s) 155, 210, 650
Csp6I GTAC 5 cut(s) 619, 1144, 1230, 1372, 1574
CspCI CAANNNNNGTGG 2 cut(s) 47, 82
CviQI GTAC 5 cut(s) 619, 1144, 1230, 1372, 1574
DdeI CTNAG 5 cut(s) 601, 749, 880, 1023, 1269
DpnI GATC 8 cut(s) 173, 303, 576, 711, 732, 1005, 1462, 1563
DpnII GATC 8 cut(s) 171, 301, 574, 709, 730, 1003, 1460, 1561
DraIII CACNNNGTG 1 cut(s) 604
DrdI GACNNNNNNGTC 1 cut(s) 54
DseDI GACNNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 1537
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco130I CCWWGG 2 cut(s) 240, 1549
Eco147I AGGCCT 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 155, 210
Eco57I CTGAAG 3 cut(s) 180, 909, 1569
Eco72I CACGTG 1 cut(s) 520
Eco88I CYCGRG 1 cut(s) 652
Eco91I GGTNACC 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 1272
EcoO65I GGTNACC 1 cut(s) 680
EcoRII CCWGG 1 cut(s) 684
EcoT14I CCWWGG 2 cut(s) 240, 1549
ErhI CCWWGG 2 cut(s) 240, 1549
FalI AAGNNNNNCTT 2 cut(s) 1358, 1390
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 5 cut(s) 100, 1211, 1334, 1471, 1531
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 5 cut(s) 491, 1068, 1164, 1352, 1593
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 4 cut(s) 245, 651, 1046, 1539
HapII CCGG 2 cut(s) 1196, 1296
HincII GTYRAC 2 cut(s) 315, 737
HindII GTYRAC 2 cut(s) 315, 737
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 7 cut(s) 55, 362, 884, 1103, 1160, 1262, 1415
HpaI GTTAAC 1 cut(s) 315
HpaII CCGG 2 cut(s) 1196, 1296
HphI GGTGA 2 cut(s) 862, 1291
Hpy166II GTNNAC 4 cut(s) 315, 323, 470, 737
Hpy188I TCNGA 7 cut(s) 130, 355, 378, 420, 883, 889, 1272
Hpy188III TCNNGA 7 cut(s) 158, 208, 491, 703, 1157, 1259, 1629
Hpy8I GTNNAC 4 cut(s) 315, 323, 470, 737
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 1024, 1320
HpyCH4III ACNGT 5 cut(s) 51, 416, 535, 1285, 1412
HpyCH4IV ACGT 3 cut(s) 177, 519, 1320
HpyCH4V TGCA 9 cut(s) 120, 187, 323, 411, 647, 1051, 1202, 1469, 1529
HpyF10VI GCNNNNNNNGC 2 cut(s) 408, 657
HpyF3I CTNAG 5 cut(s) 601, 749, 880, 1023, 1269
HpySE526I ACGT 3 cut(s) 177, 519, 1320
KspAI GTTAAC 1 cut(s) 315
Kzo9I GATC 8 cut(s) 171, 301, 574, 709, 730, 1003, 1460, 1561
LmnI GCTCC 4 cut(s) 625, 1360, 1594, 1618
LweI GCATC 5 cut(s) 634, 1189, 1243, 1493, 1591
MaeI CTAG 5 cut(s) 491, 1068, 1164, 1352, 1593
MaeII ACGT 3 cut(s) 177, 519, 1320
MaeIII GTNAC 4 cut(s) 680, 1027, 1279, 1291
MalI GATC 8 cut(s) 173, 303, 576, 711, 732, 1005, 1462, 1563
MboI GATC 8 cut(s) 171, 301, 574, 709, 730, 1003, 1460, 1561
MflI RGATCY 3 cut(s) 301, 574, 1003
MhlI GDGCHC 3 cut(s) 325, 977, 1078
MlsI TGGCCA 1 cut(s) 1539
MluCI AATT 5 cut(s) 38, 349, 1203, 1331, 1622
MluNI TGGCCA 1 cut(s) 1539
MlyI GAGTC 2 cut(s) 64, 1112
MmeI TCCRAC 2 cut(s) 401, 1288
Mox20I TGGCCA 1 cut(s) 1539
MscI TGGCCA 1 cut(s) 1539
MseI TTAA 8 cut(s) 168, 314, 512, 776, 876, 987, 1206, 1404
MslI CAYNNNNRTG 1 cut(s) 1097
Msp20I TGGCCA 1 cut(s) 1539
MspI CCGG 2 cut(s) 1196, 1296
MspR9I CCNGG 1 cut(s) 686
MvaI CCWGG 1 cut(s) 686
MwoI GCNNNNNNNGC 2 cut(s) 408, 657
NdeII GATC 8 cut(s) 171, 301, 574, 709, 730, 1003, 1460, 1561
NlaIV GGNNCC 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 956
NmuCI GTSAC 2 cut(s) 1027, 1279
NspI RCATGY 3 cut(s) 266, 591, 1236
OliI CACNNNNGTG 1 cut(s) 1097
PagI TCATGA 1 cut(s) 1628
PceI AGGCCT 1 cut(s) 245
PciI ACATGT 3 cut(s) 262, 587, 1232
PfeI GAWTC 5 cut(s) 362, 884, 1160, 1262, 1415
PflMI CCANNNNNTGG 4 cut(s) 84, 152, 188, 1550
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 2 cut(s) 63, 1111
PmaCI CACGTG 1 cut(s) 520
PmlI CACGTG 1 cut(s) 520
PpsI GAGTC 2 cut(s) 63, 1111
Ppu21I YACGTR 1 cut(s) 520
PscI ACATGT 3 cut(s) 262, 587, 1232
PsiI TTATAA 2 cut(s) 726, 758
Psp6I CCWGG 1 cut(s) 684
PspCI CACGTG 1 cut(s) 520
PspEI GGTNACC 1 cut(s) 680
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 3 cut(s) 155, 210, 650
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 3 cut(s) 301, 574, 1003
RsaI GTAC 5 cut(s) 620, 1145, 1231, 1373, 1575
RsaNI GTAC 5 cut(s) 619, 1144, 1230, 1372, 1574
RseI CAYNNNNRTG 1 cut(s) 1097
SaqAI TTAA 8 cut(s) 168, 314, 512, 776, 876, 987, 1206, 1404
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 8 cut(s) 171, 301, 574, 709, 730, 1003, 1460, 1561
Sau96I GGNCC 3 cut(s) 155, 210, 650
SchI GAGTC 2 cut(s) 64, 1112
ScrFI CCNGG 1 cut(s) 686
SduI GDGCHC 3 cut(s) 325, 977, 1078
SfaNI GCATC 5 cut(s) 634, 1189, 1243, 1493, 1591
SinI GGWCC 2 cut(s) 155, 210
SmiMI CAYNNNNRTG 1 cut(s) 1097
SmlI CTYRAG 2 cut(s) 968, 1257
SmoI CTYRAG 2 cut(s) 968, 1257
Sse9I AATT 5 cut(s) 38, 349, 1203, 1331, 1622
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 1 cut(s) 236
SspMI CTAG 5 cut(s) 491, 1068, 1164, 1352, 1593
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 684
StyI CCWWGG 2 cut(s) 240, 1549
TaaI ACNGT 5 cut(s) 51, 416, 535, 1285, 1412
TaiI ACGT 3 cut(s) 180, 522, 1323
TaqI TCGA 4 cut(s) 174, 339, 813, 954
TasI AATT 5 cut(s) 38, 349, 1203, 1331, 1622
TatI WGTACW 1 cut(s) 1143
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 5 cut(s) 362, 884, 1160, 1262, 1415
Tru1I TTAA 8 cut(s) 168, 314, 512, 776, 876, 987, 1206, 1404
Tru9I TTAA 8 cut(s) 168, 314, 512, 776, 876, 987, 1206, 1404
TscAI CASTG 4 cut(s) 609, 1027, 1417, 1540
TseFI GTSAC 2 cut(s) 1027, 1279
Tsp45I GTSAC 2 cut(s) 1027, 1279
TspRI CASTG 4 cut(s) 609, 1027, 1417, 1540
Van91I CCANNNNNTGG 4 cut(s) 84, 152, 188, 1550
VneI GTGCAC 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 155, 210
XagI CCTNNNNNAGG 1 cut(s) 1272
XapI RAATTY 2 cut(s) 38, 1331
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 3 cut(s) 266, 591, 1236
XcmI CCANNNNNNNNNTGG 2 cut(s) 461, 1547
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 5 cut(s) 491, 1068, 1164, 1352, 1593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.