Disease resistance protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g11990 |
| rosa_chinensis | RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721 |
| rosa_laevigata | RLG00000013443 |
| rosa_multiflora | Rmu_sc0002011.1_g000026 |
| rosa_roxburghii | Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080 |
| rosa_rugosa | Rorug06G0095000 Rorug06G0096000 Rorug06G0470100 |
| rosa_samantha | Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000 |
| rosa_wichuraiana | Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2608 |
| Acc36I | ACCTGC | 2 cut(s) | 2225, 2608 |
| AccB1I | GGYRCC | 3 cut(s) | 1003, 2230, 2501 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 56, 254, 836 |
| AccI | GTMKAC | 2 cut(s) | 639, 906 |
| AccII | CGCG | 3 cut(s) | 879, 1160, 2283 |
| AciI | CCGC | 3 cut(s) | 877, 2281, 2283 |
| AcoI | YGGCCR | 1 cut(s) | 571 |
| AcsI | RAATTY | 4 cut(s) | 191, 2039, 2049, 2490 |
| AcuI | CTGAAG | 5 cut(s) | 282, 995, 1489, 2214, 2292 |
| AdeI | CACNNNGTG | 1 cut(s) | 2454 |
| AfeI | AGCGCT | 2 cut(s) | 2201, 3032 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 56, 254, 274, 290, 836, 1151, 1352, 2113, 2944 |
| AflII | CTTAAG | 1 cut(s) | 2179 |
| AflIII | ACRYGT | 5 cut(s) | 364, 1368, 2317, 2953, 3015 |
| AjiI | CACGTC | 1 cut(s) | 1369 |
| AjnI | CCWGG | 3 cut(s) | 1054, 1935, 2133 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1998, 2030, 2425, 2457 |
| AleI | CACNNNNGTG | 1 cut(s) | 2236 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 181, 213 |
| AluBI | AGCT | 5 cut(s) | 355, 955, 1501, 1742, 1968 |
| AluI | AGCT | 5 cut(s) | 355, 955, 1501, 1742, 1968 |
| Alw21I | GWGCWC | 2 cut(s) | 327, 1503 |
| Alw26I | GTCTC | 6 cut(s) | 113, 834, 846, 2626, 2789, 2927 |
| Alw44I | GTGCAC | 1 cut(s) | 323 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 958, 1041 |
| Aor51HI | AGCGCT | 2 cut(s) | 2201, 3032 |
| AoxI | GGCC | 2 cut(s) | 571, 1326 |
| ApaLI | GTGCAC | 1 cut(s) | 323 |
| ApeKI | GCWGC | 1 cut(s) | 140 |
| ApoI | RAATTY | 4 cut(s) | 191, 2039, 2049, 2490 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1094, 1106, 1126, 1138 |
| AseI | ATTAAT | 1 cut(s) | 1322 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1492, 2336 |
| AspLEI | GCGC | 2 cut(s) | 2202, 3033 |
| AspS9I | GGNCC | 4 cut(s) | 47, 257, 668, 2104 |
| AsuC2I | CCSGG | 3 cut(s) | 845, 1118, 2123 |
| AsuHPI | GGTGA | 6 cut(s) | 43, 1400, 2149, 2181, 2734, 3012 |
| AvaII | GGWCC | 4 cut(s) | 47, 257, 668, 2104 |
| BaeGI | GKGCMC | 3 cut(s) | 327, 2233, 2504 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2496, 2529 |
| BamHI | GGATCC | 2 cut(s) | 1642, 2533 |
| BanI | GGYRCC | 3 cut(s) | 1003, 2230, 2501 |
| BanII | GRGCYC | 1 cut(s) | 1503 |
| BauI | CACGAG | 1 cut(s) | 1427 |
| BbsI | GAAGAC | 2 cut(s) | 270, 2280 |
| Bbv12I | GWGCWC | 2 cut(s) | 327, 1503 |
| BbvI | GCAGC | 1 cut(s) | 152 |
| BceAI | ACGGC | 2 cut(s) | 558, 796 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1390, 1424 |
| BciT130I | CCWGG | 3 cut(s) | 1056, 1937, 2135 |
| BciVI | GTATCC | 1 cut(s) | 2302 |
| BclI | TGATCA | 1 cut(s) | 2347 |
| BcnI | CCSGG | 3 cut(s) | 845, 1118, 2123 |
| BcoDI | GTCTC | 6 cut(s) | 113, 834, 846, 2626, 2789, 2927 |
| BfaI | CTAG | 1 cut(s) | 2853 |
| BfmI | CTRYAG | 2 cut(s) | 791, 1614 |
| BfoI | RGCGCY | 2 cut(s) | 2203, 3034 |
| BfrI | CTTAAG | 1 cut(s) | 2179 |
| BfuAI | ACCTGC | 2 cut(s) | 2225, 2608 |
| BfuI | GTATCC | 1 cut(s) | 2302 |
| BglII | AGATCT | 1 cut(s) | 14 |
| BisI | GCNGC | 1 cut(s) | 141 |
| BlsI | GCNGC | 1 cut(s) | 142 |
| BmcAI | AGTACT | 2 cut(s) | 313, 2080 |
| Bme1390I | CCNGG | 6 cut(s) | 845, 1056, 1118, 1937, 2123, 2135 |
| Bme18I | GGWCC | 4 cut(s) | 47, 257, 668, 2104 |
| BmgBI | CACGTC | 1 cut(s) | 1369 |
| BmgT120I | GGNCC | 4 cut(s) | 47, 257, 668, 2104 |
| BmiI | GGNNCC | 7 cut(s) | 1005, 1344, 1644, 2106, 2232, 2503, 2535 |
| BmrFI | CCNGG | 6 cut(s) | 845, 1056, 1118, 1937, 2123, 2135 |
| BmsI | GCATC | 9 cut(s) | 412, 505, 1235, 1343, 1855, 1989, 2080, 2563, 2911 |
| BpiI | GAAGAC | 2 cut(s) | 270, 2280 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1904, 1936 |
| BpmI | CTGGAG | 1 cut(s) | 2361 |
| BpuEI | CTTGAG | 1 cut(s) | 2813 |
| BpuMI | CCSGG | 3 cut(s) | 845, 1118, 2123 |
| Bsa29I | ATCGAT | 1 cut(s) | 1468 |
| BsaI | GGTCTC | 4 cut(s) | 834, 846, 2789, 2927 |
| BsaJI | CCNNGG | 5 cut(s) | 201, 844, 1384, 2281, 2538 |
| BsaWI | WCCGGW | 1 cut(s) | 3022 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 36, 66, 568, 598, 2623, 2653 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 56, 254, 274, 290, 836, 1151, 1352, 2113, 2944 |
| Bse118I | RCCGGY | 1 cut(s) | 670 |
| Bse1I | ACTGG | 5 cut(s) | 50, 416, 1209, 1302, 3044 |
| BseBI | CCWGG | 3 cut(s) | 1056, 1937, 2135 |
| BseCI | ATCGAT | 1 cut(s) | 1468 |
| BseDI | CCNNGG | 5 cut(s) | 201, 844, 1384, 2281, 2538 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 56, 254, 274, 290, 836, 1151, 1352, 2113, 2944 |
| BseMII | CTCAG | 7 cut(s) | 510, 738, 1983, 2249, 2583, 2748, 2757 |
| BseNI | ACTGG | 5 cut(s) | 50, 416, 1209, 1302, 3044 |
| BseRI | GAGGAG | 3 cut(s) | 120, 174, 576 |
| BseSI | GKGCMC | 3 cut(s) | 327, 2233, 2504 |
| BseXI | GCAGC | 1 cut(s) | 152 |
| BseYI | CCCAGC | 2 cut(s) | 1770, 1886 |
| BsgI | GTGCAG | 1 cut(s) | 1745 |
| Bsh1236I | CGCG | 3 cut(s) | 879, 1160, 2283 |
| BshFI | GGCC | 2 cut(s) | 573, 1328 |
| BshNI | GGYRCC | 3 cut(s) | 1003, 2230, 2501 |
| BshVI | ATCGAT | 1 cut(s) | 1468 |
| BsiHKAI | GWGCWC | 2 cut(s) | 327, 1503 |
| BsiSI | CCGG | 5 cut(s) | 671, 844, 1118, 2122, 3023 |
| BslFI | GGGAC | 2 cut(s) | 1399, 2090 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 56, 254, 274, 290, 836, 1151, 1352, 2113, 2944 |
| BsmAI | GTCTC | 6 cut(s) | 113, 834, 846, 2626, 2789, 2927 |
| BsmFI | GGGAC | 2 cut(s) | 1399, 2090 |
| BsmI | GAATGC | 1 cut(s) | 2489 |
| BsnI | GGCC | 2 cut(s) | 573, 1328 |
| Bso31I | GGTCTC | 4 cut(s) | 834, 846, 2789, 2927 |
| Bsp1286I | GDGCHC | 4 cut(s) | 327, 1503, 2233, 2504 |
| Bsp68I | TCGCGA | 1 cut(s) | 1160 |
| BspACI | CCGC | 3 cut(s) | 877, 2281, 2283 |
| BspANI | GGCC | 2 cut(s) | 573, 1328 |
| BspCNI | CTCAG | 7 cut(s) | 511, 737, 1982, 2248, 2582, 2747, 2758 |
| BspDI | ATCGAT | 1 cut(s) | 1468 |
| BspFNI | CGCG | 3 cut(s) | 879, 1160, 2283 |
| BspLI | GGNNCC | 7 cut(s) | 1005, 1344, 1644, 2106, 2232, 2503, 2535 |
| BspMI | ACCTGC | 2 cut(s) | 2225, 2608 |
| BspQI | GCTCTTC | 3 cut(s) | 1508, 2190, 3021 |
| BspT107I | GGYRCC | 3 cut(s) | 1003, 2230, 2501 |
| BspTI | CTTAAG | 1 cut(s) | 2179 |
| BspTNI | GGTCTC | 4 cut(s) | 834, 846, 2789, 2927 |
| BsrFI | RCCGGY | 1 cut(s) | 670 |
| BsrI | ACTGG | 5 cut(s) | 50, 416, 1209, 1302, 3044 |
| BssAI | RCCGGY | 1 cut(s) | 670 |
| BssECI | CCNNGG | 5 cut(s) | 201, 844, 1384, 2281, 2538 |
| BssSI | CACGAG | 1 cut(s) | 1427 |
| BssT1I | CCWWGG | 1 cut(s) | 201 |
| Bst2BI | CACGAG | 1 cut(s) | 1427 |
| Bst2UI | CCWGG | 3 cut(s) | 1056, 1937, 2135 |
| Bst4CI | ACNGT | 8 cut(s) | 147, 594, 694, 795, 1618, 1860, 2075, 2509 |
| Bst6I | CTCTTC | 9 cut(s) | 5, 159, 492, 844, 1014, 1251, 1508, 2190, 3021 |
| BstAFI | CTTAAG | 1 cut(s) | 2179 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2320 |
| BstC8I | GCNNGC | 1 cut(s) | 1224 |
| BstDSI | CCRYGG | 3 cut(s) | 1384, 2281, 2538 |
| BstEII | GGTNACC | 1 cut(s) | 872 |
| BstFNI | CGCG | 3 cut(s) | 879, 1160, 2283 |
| BstH2I | RGCGCY | 2 cut(s) | 2203, 3034 |
| BstHHI | GCGC | 2 cut(s) | 2202, 3033 |
| BstMAI | GTCTC | 6 cut(s) | 113, 834, 846, 2626, 2789, 2927 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1941, 2320 |
| BstNI | CCWGG | 3 cut(s) | 1056, 1937, 2135 |
| BstNSI | RCATGY | 5 cut(s) | 368, 2188, 2321, 2957, 3019 |
| BstPI | GGTNACC | 1 cut(s) | 872 |
| BstSCI | CCNGG | 6 cut(s) | 843, 1054, 1116, 1935, 2121, 2133 |
| BstSFI | CTRYAG | 2 cut(s) | 791, 1614 |
| BstSLI | GKGCMC | 3 cut(s) | 327, 2233, 2504 |
| BstUI | CGCG | 3 cut(s) | 879, 1160, 2283 |
| BstV1I | GCAGC | 1 cut(s) | 152 |
| BstV2I | GAAGAC | 2 cut(s) | 270, 2280 |
| BstX2I | RGATCY | 4 cut(s) | 14, 430, 1642, 2533 |
| BstYI | RGATCY | 4 cut(s) | 14, 430, 1642, 2533 |
| Bsu15I | ATCGAT | 1 cut(s) | 1468 |
| BsuI | GTATCC | 1 cut(s) | 2302 |
| BsuRI | GGCC | 2 cut(s) | 573, 1328 |
| BsuTUI | ATCGAT | 1 cut(s) | 1468 |
| BtgI | CCRYGG | 3 cut(s) | 1384, 2281, 2538 |
| BtgZI | GCGATG | 1 cut(s) | 528 |
| BtrI | CACGTC | 1 cut(s) | 1369 |
| BtsIMutI | CAGTG | 3 cut(s) | 1856, 1977, 2243 |
| BtuMI | TCGCGA | 1 cut(s) | 1160 |
| BveI | ACCTGC | 2 cut(s) | 2225, 2608 |
| Cac8I | GCNNGC | 1 cut(s) | 1224 |
| CaiI | CAGNNNCTG | 2 cut(s) | 958, 1041 |
| CfoI | GCGC | 2 cut(s) | 2202, 3033 |
| Cfr10I | RCCGGY | 1 cut(s) | 670 |
| Cfr13I | GGNCC | 4 cut(s) | 47, 257, 668, 2104 |
| Cfr42I | CCGCGG | 1 cut(s) | 2284 |
| ClaI | ATCGAT | 1 cut(s) | 1468 |
| CseI | GACGC | 2 cut(s) | 625, 1276 |
| CsiI | ACCWGGT | 1 cut(s) | 2133 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 550, 585 |
| DraI | TTTAAA | 3 cut(s) | 133, 378, 2472 |
| DraIII | CACNNNGTG | 1 cut(s) | 2454 |
| EaeI | YGGCCR | 1 cut(s) | 571 |
| Eam1104I | CTCTTC | 9 cut(s) | 5, 159, 492, 844, 1014, 1251, 1508, 2190, 3021 |
| EarI | CTCTTC | 9 cut(s) | 5, 159, 492, 844, 1014, 1251, 1508, 2190, 3021 |
| Ecl136II | GAGCTC | 1 cut(s) | 1501 |
| Eco130I | CCWWGG | 1 cut(s) | 201 |
| Eco24I | GRGCYC | 1 cut(s) | 1503 |
| Eco31I | GGTCTC | 4 cut(s) | 834, 846, 2789, 2927 |
| Eco32I | GATATC | 1 cut(s) | 2119 |
| Eco47I | GGWCC | 4 cut(s) | 47, 257, 668, 2104 |
| Eco47III | AGCGCT | 2 cut(s) | 2201, 3032 |
| Eco53kI | GAGCTC | 1 cut(s) | 1501 |
| Eco57I | CTGAAG | 5 cut(s) | 282, 995, 1489, 2214, 2292 |
| Eco91I | GGTNACC | 1 cut(s) | 872 |
| EcoICRI | GAGCTC | 1 cut(s) | 1501 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2104 |
| EcoO65I | GGTNACC | 1 cut(s) | 872 |
| EcoRI | GAATTC | 1 cut(s) | 2049 |
| EcoRII | CCWGG | 3 cut(s) | 1054, 1935, 2133 |
| EcoRV | GATATC | 1 cut(s) | 2119 |
| EcoT14I | CCWWGG | 1 cut(s) | 201 |
| EcoT38I | GRGCYC | 1 cut(s) | 1503 |
| ErhI | CCWWGG | 1 cut(s) | 201 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2594, 2626 |
| FaqI | GGGAC | 2 cut(s) | 1399, 2090 |
| FauI | CCCGC | 1 cut(s) | 2288 |
| FbaI | TGATCA | 1 cut(s) | 2347 |
| FblI | GTMKAC | 2 cut(s) | 639, 906 |
| Fnu4HI | GCNGC | 1 cut(s) | 141 |
| FriOI | GRGCYC | 1 cut(s) | 1503 |
| Fsp4HI | GCNGC | 1 cut(s) | 141 |
| FspBI | CTAG | 1 cut(s) | 2853 |
| GlaI | GCGC | 2 cut(s) | 2201, 3032 |
| GluI | GCNGC | 1 cut(s) | 141 |
| GsaI | CCCAGC | 2 cut(s) | 1774, 1890 |
| GsuI | CTGGAG | 1 cut(s) | 2361 |
| HaeII | RGCGCY | 2 cut(s) | 2203, 3034 |
| HaeIII | GGCC | 2 cut(s) | 573, 1328 |
| HapII | CCGG | 5 cut(s) | 671, 844, 1118, 2122, 3023 |
| HgaI | GACGC | 2 cut(s) | 625, 1276 |
| HhaI | GCGC | 2 cut(s) | 2202, 3033 |
| Hin6I | GCGC | 2 cut(s) | 2200, 3031 |
| HinP1I | GCGC | 2 cut(s) | 2200, 3031 |
| HincII | GTYRAC | 3 cut(s) | 640, 1600, 1606 |
| HindII | GTYRAC | 3 cut(s) | 640, 1600, 1606 |
| HindIII | AAGCTT | 1 cut(s) | 1740 |
| HinfI | GANTC | 7 cut(s) | 121, 464, 1038, 1091, 1520, 1775, 2868 |
| HpaI | GTTAAC | 1 cut(s) | 1600 |
| HpaII | CCGG | 5 cut(s) | 671, 844, 1118, 2122, 3023 |
| HphI | GGTGA | 6 cut(s) | 43, 1400, 2149, 2181, 2734, 3012 |
| Hpy188I | TCNGA | 8 cut(s) | 1037, 1078, 1096, 1231, 1498, 1795, 2572, 2737 |
| Hpy99I | CGWCG | 3 cut(s) | 641, 1270, 1370 |
| HpyAV | CCTTC | 8 cut(s) | 1145, 1225, 1356, 1696, 1908, 1949, 2544, 2768 |
| HpyCH4III | ACNGT | 8 cut(s) | 147, 594, 694, 795, 1618, 1860, 2075, 2509 |
| HpyCH4IV | ACGT | 4 cut(s) | 806, 1368, 1602, 2859 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1941, 2320 |
| HpySE526I | ACGT | 4 cut(s) | 806, 1368, 1602, 2859 |
| HspAI | GCGC | 2 cut(s) | 2200, 3031 |
| Ksp22I | TGATCA | 1 cut(s) | 2347 |
| KspAI | GTTAAC | 1 cut(s) | 1600 |
| KspI | CCGCGG | 1 cut(s) | 2284 |
| LguI | GCTCTTC | 3 cut(s) | 1508, 2190, 3021 |
| LmnI | GCTCC | 2 cut(s) | 352, 2380 |
| Lsp1109I | GCAGC | 1 cut(s) | 152 |
| LweI | GCATC | 9 cut(s) | 412, 505, 1235, 1343, 1855, 1989, 2080, 2563, 2911 |
| MabI | ACCWGGT | 1 cut(s) | 2133 |
| MaeI | CTAG | 1 cut(s) | 2853 |
| MaeII | ACGT | 4 cut(s) | 806, 1368, 1602, 2859 |
| MaeIII | GTNAC | 6 cut(s) | 872, 2129, 2187, 2783, 2855, 3018 |
| MfeI | CAATTG | 5 cut(s) | 990, 1512, 1930, 2028, 2394 |
| MflI | RGATCY | 4 cut(s) | 14, 430, 1642, 2533 |
| MhlI | GDGCHC | 4 cut(s) | 327, 1503, 2233, 2504 |
| MlyI | GAGTC | 3 cut(s) | 115, 458, 1032 |
| MmeI | TCCRAC | 3 cut(s) | 69, 149, 2655 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1492, 2336 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2236 |
| MspA1I | CMGCKG | 1 cut(s) | 2283 |
| MspCI | CTTAAG | 1 cut(s) | 2179 |
| MspI | CCGG | 5 cut(s) | 671, 844, 1118, 2122, 3023 |
| MspR9I | CCNGG | 6 cut(s) | 845, 1056, 1118, 1937, 2123, 2135 |
| MunI | CAATTG | 5 cut(s) | 990, 1512, 1930, 2028, 2394 |
| Mva1269I | GAATGC | 1 cut(s) | 2489 |
| MvaI | CCWGG | 3 cut(s) | 1056, 1937, 2135 |
| MvnI | CGCG | 3 cut(s) | 879, 1160, 2283 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1941, 2320 |
| NciI | CCSGG | 3 cut(s) | 845, 1118, 2123 |
| NlaIV | GGNNCC | 7 cut(s) | 1005, 1344, 1644, 2106, 2232, 2503, 2535 |
| NmuCI | GTSAC | 4 cut(s) | 2187, 2783, 2855, 3018 |
| NruI | TCGCGA | 1 cut(s) | 1160 |
| NspI | RCATGY | 5 cut(s) | 368, 2188, 2321, 2957, 3019 |
| OliI | CACNNNNGTG | 1 cut(s) | 2236 |
| PaqCI | CACCTGC | 1 cut(s) | 2608 |
| PciI | ACATGT | 4 cut(s) | 364, 2317, 2953, 3015 |
| PciSI | GCTCTTC | 3 cut(s) | 1508, 2190, 3021 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 447, 803 |
| PctI | GAATGC | 1 cut(s) | 2489 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1492, 2336 |
| PfeI | GAWTC | 4 cut(s) | 1091, 1520, 1775, 2868 |
| PflFI | GACNNNGTC | 1 cut(s) | 1270 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 56, 254, 836 |
| PfoI | TCCNGGA | 1 cut(s) | 2121 |
| PkrI | GCNGC | 1 cut(s) | 142 |
| PleI | GAGTC | 3 cut(s) | 115, 458, 1032 |
| PpsI | GAGTC | 3 cut(s) | 115, 458, 1032 |
| PpuMI | RGGWCCY | 1 cut(s) | 2104 |
| PscI | ACATGT | 4 cut(s) | 364, 2317, 2953, 3015 |
| PshBI | ATTAAT | 1 cut(s) | 1322 |
| Psp124BI | GAGCTC | 1 cut(s) | 1503 |
| Psp5II | RGGWCCY | 1 cut(s) | 2104 |
| Psp6I | CCWGG | 3 cut(s) | 1054, 1935, 2133 |
| PspEI | GGTNACC | 1 cut(s) | 872 |
| PspFI | CCCAGC | 2 cut(s) | 1770, 1886 |
| PspGI | CCWGG | 3 cut(s) | 1054, 1935, 2133 |
| PspN4I | GGNNCC | 7 cut(s) | 1005, 1344, 1644, 2106, 2232, 2503, 2535 |
| PspPI | GGNCC | 4 cut(s) | 47, 257, 668, 2104 |
| PspPPI | RGGWCCY | 1 cut(s) | 2104 |
| PstNI | CAGNNNCTG | 2 cut(s) | 958, 1041 |
| PsuI | RGATCY | 4 cut(s) | 14, 430, 1642, 2533 |
| PsyI | GACNNNGTC | 1 cut(s) | 1270 |
| RruI | TCGCGA | 1 cut(s) | 1160 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2236 |
| SacI | GAGCTC | 1 cut(s) | 1503 |
| SacII | CCGCGG | 1 cut(s) | 2284 |
| SalI | GTCGAC | 1 cut(s) | 638 |
| SapI | GCTCTTC | 3 cut(s) | 1508, 2190, 3021 |
| SatI | GCNGC | 1 cut(s) | 141 |
| Sau96I | GGNCC | 4 cut(s) | 47, 257, 668, 2104 |
| ScaI | AGTACT | 2 cut(s) | 313, 2080 |
| SchI | GAGTC | 3 cut(s) | 115, 458, 1032 |
| ScrFI | CCNGG | 6 cut(s) | 845, 1056, 1118, 1937, 2123, 2135 |
| SduI | GDGCHC | 4 cut(s) | 327, 1503, 2233, 2504 |
| SexAI | ACCWGGT | 1 cut(s) | 2133 |
| SfaNI | GCATC | 9 cut(s) | 412, 505, 1235, 1343, 1855, 1989, 2080, 2563, 2911 |
| SfcI | CTRYAG | 2 cut(s) | 791, 1614 |
| Sfr303I | CCGCGG | 1 cut(s) | 2284 |
| SgrBI | CCGCGG | 1 cut(s) | 2284 |
| SinI | GGWCC | 4 cut(s) | 47, 257, 668, 2104 |
| SmiI | ATTTAAAT | 1 cut(s) | 133 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2236 |
| SmlI | CTYRAG | 2 cut(s) | 2179, 2792 |
| SmoI | CTYRAG | 2 cut(s) | 2179, 2792 |
| SsiI | CCGC | 3 cut(s) | 877, 2281, 2283 |
| SspI | AATATT | 2 cut(s) | 388, 2337 |
| SspMI | CTAG | 1 cut(s) | 2853 |
| SstI | GAGCTC | 1 cut(s) | 1503 |
| StyD4I | CCNGG | 6 cut(s) | 843, 1054, 1116, 1935, 2121, 2133 |
| StyI | CCWWGG | 1 cut(s) | 201 |
| SwaI | ATTTAAAT | 1 cut(s) | 133 |
| TaaI | ACNGT | 8 cut(s) | 147, 594, 694, 795, 1618, 1860, 2075, 2509 |
| TaiI | ACGT | 4 cut(s) | 809, 1371, 1605, 2862 |
| TaqI | TCGA | 8 cut(s) | 97, 316, 441, 639, 716, 1113, 1468, 1904 |
| TatI | WGTACW | 2 cut(s) | 311, 2078 |
| TfiI | GAWTC | 4 cut(s) | 1091, 1520, 1775, 2868 |
| TscAI | CASTG | 3 cut(s) | 1863, 1977, 2243 |
| TseFI | GTSAC | 4 cut(s) | 2187, 2783, 2855, 3018 |
| TseI | GCWGC | 1 cut(s) | 140 |
| Tsp45I | GTSAC | 4 cut(s) | 2187, 2783, 2855, 3018 |
| TspGWI | ACGGA | 2 cut(s) | 833, 1373 |
| TspRI | CASTG | 3 cut(s) | 1863, 1977, 2243 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1270 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 56, 254, 836 |
| Vha464I | CTTAAG | 1 cut(s) | 2179 |
| VneI | GTGCAC | 1 cut(s) | 323 |
| VpaK11BI | GGWCC | 4 cut(s) | 47, 257, 668, 2104 |
| VspI | ATTAAT | 1 cut(s) | 1322 |
| XapI | RAATTY | 4 cut(s) | 191, 2039, 2049, 2490 |
| XceI | RCATGY | 5 cut(s) | 368, 2188, 2321, 2957, 3019 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2455 |
| XmiI | GTMKAC | 2 cut(s) | 639, 906 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1492, 2336 |
| XspI | CTAG | 1 cut(s) | 2853 |
| ZrmI | AGTACT | 2 cut(s) | 313, 2080 |