Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

37024103 .. 37025506

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG207800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTCTTGCAAGAGTTAGATAGTTCTAGCCGTGCCCAACTTGTCGGCACCGCCTTTGTGGAGTCGTATTACCATTTTCTTCGCCACGCCCCAGAAGATATGTACAAGTTTTATCAAGATTCTAGTGCTTCATATAATGGCAATATGATTACACTGAATACGTATTATACTCGGTCTGTAATGGTGCGTTTATTTGATACTGTGCATGCTGCAATGTTAGACCTATTATACTCGGTCTGTAATGAGAGTGTAGATGCTCAAGAATCTCCTCAGAAAGGGGTGACTGTATTAGTAACCGGATACTTGGTTGGAAAAGACAATGTGGGAAGGAAATTTGCCCAAACATTCATCCTAGCTCCACAGGAAAAGGGGTACTTCATCTTCAAGGATATGTTTAGGTATATTAAGGACAATGAATCATCACAAACAAACATCATTGATGAACAAGATTTTGAACAAGGATCAGTTATTCAATCAAGTCAGAGTGAAGATCTTGCGGATTCAACCCCGGAAGTCCAGGAGGATGCTTTAAAGAAATCATATGCATCAGTGGTTGCAGAAAGAAGTGTCGCATCCAGTCCTGTTCATGCTACCCAAGTGAGGAGGACAATATCTGTAATCACTGGCCACCCATCCCTTGGTTACGCAGATCCTTCTCTTGTACCAGAGGCTTCAGCTCCTGGTGATGATGCCAGCTTGGGAAAGGAGCAATACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

239

Amino Acids

26.52

Weight (kDa)

4.72

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	15 - 134	1.1e-20	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	638
AciI	CCGC	2 cut(s)	51, 497
AclWI	GGATC	2 cut(s)	469, 644
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	657
AfaI	GTAC	3 cut(s)	104, 374, 663
AfiI	CCNNNNNNNGG	3 cut(s)	275, 600, 638
AgsI	TTSAA	4 cut(s)	385, 455, 473, 504
AjnI	CCWGG	2 cut(s)	516, 679
AluBI	AGCT	3 cut(s)	356, 677, 696
AluI	AGCT	3 cut(s)	356, 677, 696
AlwI	GGATC	2 cut(s)	469, 644
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	292, 695
BaeGI	GKGCMC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	640
BceAI	ACGGC	1 cut(s)	15
BciT130I	CCWGG	2 cut(s)	518, 681
BciVI	GTATCC	1 cut(s)	293
BcnI	CCSGG	1 cut(s)	509
BfaI	CTAG	3 cut(s)	27, 123, 353
BfuI	GTATCC	1 cut(s)	293
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	3 cut(s)	509, 518, 681
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	3 cut(s)	509, 518, 681
BmsI	GCATC	5 cut(s)	244, 514, 554, 581, 679
BplI	GAGNNNNNCTC	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	509
BsaAI	YACGTR	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	507, 637
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 600, 638
Bse1I	ACTGG	2 cut(s)	576, 628
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	518, 681
BseDI	CCNNGG	2 cut(s)	507, 637
BseGI	GGATG	4 cut(s)	348, 529, 572, 632
BseLI	CCNNNNNNNGG	3 cut(s)	275, 600, 638
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	2 cut(s)	576, 628
BseRI	GAGGAG	2 cut(s)	258, 616
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	627
BshNI	GGYRCC	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	297, 509
BslI	CCNNNNNNNGG	3 cut(s)	275, 600, 638
BsnI	GGCC	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	461, 490, 649
BspACI	CCGC	2 cut(s)	51, 497
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	716
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	2 cut(s)	469, 644
BspT107I	GGYRCC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	219
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	576, 628
BssECI	CCNNGG	2 cut(s)	507, 637
BssMI	GATC	3 cut(s)	461, 490, 649
BssT1I	CCWWGG	1 cut(s)	637
Bst2UI	CCWGG	2 cut(s)	518, 681
Bst4CI	ACNGT	2 cut(s)	202, 286
BstAUI	TGTACA	1 cut(s)	102
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	207, 694
BstDEI	CTNAG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	273
BstF5I	GGATG	4 cut(s)	348, 529, 572, 632
BstKTI	GATC	3 cut(s)	464, 493, 652
BstMBI	GATC	3 cut(s)	461, 490, 649
BstNI	CCWGG	2 cut(s)	518, 681
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	507, 516, 679
BstSLI	GKGCMC	1 cut(s)	37
BstSNI	TACGTA	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	2 cut(s)	490, 649
BstYI	RGATCY	2 cut(s)	490, 649
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	627
BtsCI	GGATG	4 cut(s)	348, 529, 572, 632
BtsIMutI	CAGTG	3 cut(s)	152, 555, 621
Cac8I	GCNNGC	2 cut(s)	207, 694
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	716
Csp6I	GTAC	3 cut(s)	103, 373, 662
CviAII	CATG	3 cut(s)	206, 587, 717
CviJI	RGCY	6 cut(s)	30, 356, 627, 671, 677, 696
CviKI_1	RGCY	6 cut(s)	30, 356, 627, 671, 677, 696
CviQI	GTAC	3 cut(s)	103, 373, 662
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	3 cut(s)	463, 492, 651
DpnII	GATC	3 cut(s)	461, 490, 649
DraI	TTTAAA	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	625
Eco105I	TACGTA	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	657
EcoNI	CCTNNNNNAGG	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	516, 679
EcoT14I	CCWWGG	1 cut(s)	637
EcoT22I	ATGCAT	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	3 cut(s)	209, 590, 720
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	3 cut(s)	205, 586, 716
FauNDI	CATATG	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	4 cut(s)	335, 536, 559, 619
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	3 cut(s)	27, 123, 353
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	627
HapII	CCGG	2 cut(s)	297, 509
Hin1II	CATG	3 cut(s)	209, 590, 720
HinfI	GANTC	5 cut(s)	62, 119, 263, 416, 500
HpaII	CCGG	2 cut(s)	297, 509
HphI	GGTGA	2 cut(s)	292, 695
Hpy188I	TCNGA	2 cut(s)	273, 483
Hpy188III	TCNNGA	3 cut(s)	116, 260, 717
HpyAV	CCTTC	2 cut(s)	321, 663
HpyCH4III	ACNGT	2 cut(s)	202, 286
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	5 cut(s)	10, 205, 212, 545, 557
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	3 cut(s)	209, 590, 720
Kzo9I	GATC	3 cut(s)	461, 490, 649
LmnI	GCTCC	3 cut(s)	361, 682, 706
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	5 cut(s)	244, 514, 554, 581, 679
MaeI	CTAG	3 cut(s)	27, 123, 353
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	3 cut(s)	280, 292, 641
MalI	GATC	3 cut(s)	463, 492, 651
MboI	GATC	3 cut(s)	461, 490, 649
MboII	GAAGA	4 cut(s)	71, 107, 373, 500
MflI	RGATCY	2 cut(s)	490, 649
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	1 cut(s)	332
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	279, 514, 594, 597, 661
Mox20I	TGGCCA	1 cut(s)	627
Mph1103I	ATGCAT	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	2 cut(s)	405, 530
Msp20I	TGGCCA	1 cut(s)	627
MspI	CCGG	2 cut(s)	297, 509
MspR9I	CCNGG	3 cut(s)	509, 518, 681
MvaI	CCWGG	2 cut(s)	518, 681
NciI	CCSGG	1 cut(s)	509
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	3 cut(s)	461, 490, 649
NlaIII	CATG	3 cut(s)	209, 590, 720
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	209
PagI	TCATGA	1 cut(s)	716
PfeI	GAWTC	4 cut(s)	119, 263, 416, 500
PflMI	CCANNNNNTGG	1 cut(s)	638
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	516, 679
PspGI	CCWGG	2 cut(s)	516, 679
PspN4I	GGNNCC	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	2 cut(s)	490, 649
RsaI	GTAC	3 cut(s)	104, 374, 663
RsaNI	GTAC	3 cut(s)	103, 373, 662
SaqAI	TTAA	2 cut(s)	405, 530
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	3 cut(s)	461, 490, 649
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	509, 518, 681
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	164, 225, 358, 401, 679, 698
SfaNI	GCATC	5 cut(s)	244, 514, 554, 581, 679
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SnaBI	TACGTA	1 cut(s)	162
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	2 cut(s)	51, 497
SspMI	CTAG	3 cut(s)	27, 123, 353
StyD4I	CCNGG	3 cut(s)	507, 516, 679
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	2 cut(s)	202, 286
TaiI	ACGT	1 cut(s)	164
TaqII	GACCGA	2 cut(s)	162, 223
TasI	AATT	1 cut(s)	332
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	4 cut(s)	119, 263, 416, 500
Tru1I	TTAA	2 cut(s)	405, 530
Tru9I	TTAA	2 cut(s)	405, 530
TscAI	CASTG	3 cut(s)	159, 555, 628
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	6 cut(s)	120, 337, 367, 429, 456, 575
TspRI	CASTG	3 cut(s)	159, 555, 628
Van91I	CCANNNNNTGG	1 cut(s)	638
XagI	CCTNNNNNAGG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XspI	CTAG	3 cut(s)	27, 123, 353
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.