Rroxscaffold_7G00191650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006409
Physical Location & Seq
Forward (+)
32339035 .. 32341741
2707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191650.1

Sequence Viewer

Length: 330 bp
ATGATGACGATGAACCAGGGAGACGCAAGATCTCTTTTTATAGTGGTGGATTTTCCTTATAAAGCTCCATACTTTAGTAGTGTATTTGAATTTAAATTGGGTGAGATGCTTCGAGGACAAACAAAGGAAGAAGAAGCATTTGCATGTGTAGGACAGTTGAGTCAAACGAAGTGGCGCCAACCCATTTCATGGATGTTTTCTTCTTTGGCTACTGCCACTTCTTGCAGTTCTACCGACCTGTGTCTATTGCCAGATGGTGGTCCTGAAGATTTTAAGATCGATGTTCCATTGCACGGACATATCTTCAACATCAGGACCAAAAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.3

Weight (kDa)

6.06

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AasI GACNNNNNNGTC 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 174
AccB7I CCANNNNNTGG 2 cut(s) 189, 257
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 175
AfiI CCNNNNNNNGG 3 cut(s) 189, 257, 293
AgsI TTSAA 2 cut(s) 89, 307
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 15
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 260, 315
AsuHPI GGTGA 1 cut(s) 113
AvaII GGWCC 2 cut(s) 260, 315
BanI GGYRCC 1 cut(s) 174
BccI CCATC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 178
BglII AGATCT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 2 cut(s) 260, 315
BmgT120I GGNCC 2 cut(s) 260, 315
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 96
BoxI GACNNNNGTC 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 257, 293
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 3 cut(s) 189, 257, 293
BseMI GCAATG 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 279
BslI CCNNNNNNNGG 3 cut(s) 189, 257, 293
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
Bsp143I GATC 2 cut(s) 29, 276
BspDI ATCGAT 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 29, 276
BssNI GRCGYC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 175
BstF5I GGATG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 32, 279
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 2 cut(s) 29, 276
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 147
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 279
BtsCI GGATG 1 cut(s) 198
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 260, 315
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 1 cut(s) 32
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 2 cut(s) 144, 189
CviJI RGCY 2 cut(s) 65, 209
CviKI_1 RGCY 2 cut(s) 65, 209
DinI GGCGCC 1 cut(s) 176
DpnI GATC 2 cut(s) 31, 278
DpnII GATC 2 cut(s) 29, 276
DraI TTTAAA 1 cut(s) 94
DrdI GACNNNNNNGTC 1 cut(s) 159
DseDI GACNNNNNNGTC 1 cut(s) 159
Eco47I GGWCC 2 cut(s) 260, 315
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 15
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 2 cut(s) 147, 192
FaiI YATR 6 cut(s) 41, 60, 70, 145, 190, 300
FatI CATG 2 cut(s) 143, 188
FokI GGATG 1 cut(s) 205
GlaI GCGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 178
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 2 cut(s) 147, 192
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 1 cut(s) 160
HphI GGTGA 1 cut(s) 113
Hpy188III TCNNGA 2 cut(s) 263, 313
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 143, 225, 292
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 2 cut(s) 147, 192
HspAI GCGC 1 cut(s) 175
KasI GGCGCC 1 cut(s) 174
Kzo9I GATC 2 cut(s) 29, 276
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 6 cut(s) 2, 29, 251, 264, 276, 298
LweI GCATC 1 cut(s) 96
MalI GATC 2 cut(s) 31, 278
MboI GATC 2 cut(s) 29, 276
MboII GAAGA 5 cut(s) 140, 143, 192, 278, 295
MflI RGATCY 1 cut(s) 29
MluCI AATT 2 cut(s) 89, 95
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 1 cut(s) 107
MseI TTAA 2 cut(s) 93, 273
MslI CAYNNNNRTG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
NarI GGCGCC 1 cut(s) 175
NdeII GATC 2 cut(s) 29, 276
NlaIII CATG 2 cut(s) 147, 192
NlaIV GGNNCC 1 cut(s) 176
NspI RCATGY 1 cut(s) 147
PflMI CCANNNNNTGG 2 cut(s) 189, 257
PleI GAGTC 1 cut(s) 168
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 168
PshAI GACNNNNGTC 1 cut(s) 240
PsiI TTATAA 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 260, 315
PsuI RGATCY 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 93, 273
Sau3AI GATC 2 cut(s) 29, 276
Sau96I GGNCC 2 cut(s) 260, 315
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 17
SetI ASST 3 cut(s) 67, 240, 327
SfaNI GCATC 1 cut(s) 96
SfoI GGCGCC 1 cut(s) 176
SinI GGWCC 2 cut(s) 260, 315
SmiI ATTTAAAT 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 142
Sse9I AATT 2 cut(s) 89, 95
SspDI GGCGCC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 15
SwaI ATTTAAAT 1 cut(s) 94
TaaI ACNGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 112, 279
TasI AATT 2 cut(s) 89, 95
Tru1I TTAA 2 cut(s) 93, 273
Tru9I TTAA 2 cut(s) 93, 273
TspDTI ATGAA 2 cut(s) 26, 177
TspGWI ACGGA 1 cut(s) 309
Van91I CCANNNNNTGG 2 cut(s) 189, 257
VpaK11BI GGWCC 2 cut(s) 260, 315
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.