Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

36220077 .. 36220788

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG203500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATGCCACTGTTGGACAACTTGGGAAGGAATTCAAGAAATTTGGGTCTATCACGTGGGACGGGATCCAAGTCAAAAAAAATGGATAAGGCTTCAACTATCAGAATCGGGGATTTTCAAGCAGTGATTGAGGAAGAGAGAACCCCCCACCCGAGGTTCTGGTCTATAGAAGTAAAAAGGTTTCCGCAGTCTCTTATCAGTAAAGCTAACAAAGCTGATGGTTGTTTCAGTTGGCAATGGGAGAAGAGGGAGGTACCACCTGCTGTAGCTTTGGTAAGAATCAATTCAGGAAACATGGTGAGCTTTCTCGATCCAAGTCTTCCGGTGGACACAATGGAGAGGGTTATCATCGCCCAAGGGGCAGCAAATAAACCGCACTTTTGTTCCTGCTTAGAATATTTGTCAAGGAAATTGGCGGACACAACGGAGGGGGTTGCATTTTTCTTTCCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.99

Weight (kDa)

9.3

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	268
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AciI	CCGC	3 cut(s)	185, 374, 416
AclWI	GGATC	3 cut(s)	60, 73, 305
AcsI	RAATTY	2 cut(s)	31, 40
AcvI	CACGTG	1 cut(s)	56
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	3 cut(s)	36, 96, 119
AluBI	AGCT	4 cut(s)	206, 215, 269, 303
AluI	AGCT	4 cut(s)	206, 215, 269, 303
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	3 cut(s)	60, 73, 305
Ama87I	CYCGRG	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	2 cut(s)	31, 40
Asp700I	GAANNNNTTC	2 cut(s)	31, 283
Asp718I	GGTACC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	253
BbrPI	CACGTG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	195
BfmI	CTRYAG	2 cut(s)	165, 264
BfuAI	ACCTGC	1 cut(s)	268
BglI	GCCNNNNNGGC	1 cut(s)	359
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	67, 255
BpiI	GAAGAC	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	152, 355
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	152, 355
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	374
BshNI	GGYRCC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	65, 310
BspACI	CCGC	3 cut(s)	185, 374, 416
BspLI	GGNNCC	2 cut(s)	67, 255
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	3 cut(s)	60, 73, 305
BspT107I	GGYRCC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	152, 355
BssMI	GATC	2 cut(s)	65, 310
BssT1I	CCWWGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	129, 239
BstBAI	YACGTR	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	391
BstKTI	GATC	2 cut(s)	68, 313
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	2 cut(s)	65, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 359
BstSFI	CTRYAG	2 cut(s)	165, 264
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	8, 129
BveI	ACCTGC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	5 cut(s)	92, 206, 215, 269, 303
CviKI_1	RGCY	5 cut(s)	92, 206, 215, 269, 303
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	2 cut(s)	67, 312
DpnII	GATC	2 cut(s)	65, 310
Eam1104I	CTCTTC	2 cut(s)	129, 239
EarI	CTCTTC	2 cut(s)	129, 239
EciI	GGCGGA	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	355
Eco72I	CACGTG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	298
FaiI	YATR	2 cut(s)	167, 296
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	363
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	2 cut(s)	105, 279
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	3 cut(s)	36, 288, 308
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 359
HpyF3I	CTNAG	1 cut(s)	391
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	65, 310
LpnPI	CCDG	5 cut(s)	145, 273, 273, 336, 400
Lsp1109I	GCAGC	1 cut(s)	374
MaeII	ACGT	1 cut(s)	55
MalI	GATC	2 cut(s)	67, 312
MboI	GATC	2 cut(s)	65, 310
MboII	GAAGA	3 cut(s)	146, 256, 311
MflI	RGATCY	1 cut(s)	65
MluCI	AATT	4 cut(s)	31, 40, 283, 410
MnlI	CCTC	6 cut(s)	124, 147, 240, 244, 333, 421
MroXI	GAANNNNTTC	2 cut(s)	31, 283
MseI	TTAA	1 cut(s)	454
MspI	CCGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	212, 359
NdeII	GATC	2 cut(s)	65, 310
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	67, 255
PaqCI	CACCTGC	1 cut(s)	268
PdmI	GAANNNNTTC	2 cut(s)	31, 283
PfeI	GAWTC	2 cut(s)	105, 279
PkrI	GCNGC	1 cut(s)	364
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
Ppu21I	YACGTR	1 cut(s)	56
PspCI	CACGTG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	67, 255
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	2 cut(s)	65, 310
SetI	ASST	9 cut(s)	58, 158, 182, 208, 217, 255, 262, 271, 305
SfcI	CTRYAG	2 cut(s)	165, 264
Sse9I	AATT	4 cut(s)	31, 40, 283, 410
SsiI	CCGC	3 cut(s)	185, 374, 416
SspI	AATATT	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	309
TasI	AATT	4 cut(s)	31, 40, 283, 410
TfiI	GAWTC	2 cut(s)	105, 279
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TscAI	CASTG	2 cut(s)	15, 129
TseI	GCWGC	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	15, 129
XapI	RAATTY	2 cut(s)	31, 40
XmnI	GAANNNNTTC	2 cut(s)	31, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.