Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

35459106 .. 35462138

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG213800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTTCAGGATGACGATGAACCAGGGAGACGCAAGATCTCTTTTTATAGTGGTGAATTTTCCTTATAAAGCTCCATACTTTAGTAGTGTATTTGAAATTAAATTGGGTGAGATGCTTCGAGGACAAACAAAGGAAGAAGAAGCATTTGCATGTGTAGGACAGTTGAGTCAAACGAAGTGGCGCCAACCCATTTCATGGATGTTTTCTTCTTTGGCTACTGCCACTTCTTGCAGTTCTACCGACCTGTGTCTATTGCCAGATGGTGGTCCTGAAGATTTTAAGATCGATGTTCCATTGCACGGATATATCTTCAACATCAGGACCAAAGAGGTGCGAAAAATGAAGCCACCCAAGGCCTCCAAATGCTTAGGACATGTTGTATCTTTGAAAGGGGACATTTATTTTATTACAGATCCATCCTGGTTAACTAGTGCACCAGACCCGTCTTTCGAGCGATATCTTCCTGACAAAGATTCTTGGGAAACTCTGACACATTTTCCCCGTATTGAGGGCATGAGTTGCGATGGTCAGATGGTGGCTATCGCCGTCTGTGATGAATTCATTTTGTTTAACATAGATGCCTCTATCACAGGTTGTCAAATGTGGGCGTATGATGTAGGTAGAAACAAATGGTATTTAGTCAAAGTTGACAACTATGGGTGCTATGGTATACGAGGGGTGGCTGTGGTTCTAGAAAAGACTATCTATGCCTTAACACACATGTCGTTTGACACAGTTCTGGCTTTATCTATTACAAGGGAACAAATTGATGGAGATCTTGTATTTACATGTTCTCTACACTCGGTCATTGAGGTGCCGTACATGGAGCTATTTCCATTGGGTGAGGCAGGCCCGAGAAGTAGGTATTTGGTTCATTTGGGTCAGCAGGAGTTTTGTCTTGTCCAGAGTGGTCTCCTCCCTGGTTATAATGATCGTCAACCCATCAAATTCAGCATTATAAAGCTTGTGGGAAAAAACTCAATGAATATAACTGATGAAATAGTCTACGAGGTGCATCTTCAGGATTTTGAGCAATTTCGAGTTAGACACTGCTTCTCGCCGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

40.34

Weight (kDa)

5.66

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	66, 927, 959
AasI	GACNNNNNNGTC	1 cut(s)	165
AccB1I	GGYRCC	2 cut(s)	180, 814
AccB7I	CCANNNNNTGG	2 cut(s)	195, 263
AccI	GTMKAC	2 cut(s)	670, 1005
AciI	CCGC	1 cut(s)	1061
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	3 cut(s)	55, 557, 947
AcuI	CTGAAG	2 cut(s)	291, 1004
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	4 cut(s)	195, 263, 299, 508
AflIII	ACRYGT	3 cut(s)	373, 720, 788
AgsI	TTSAA	3 cut(s)	95, 313, 388
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	3 cut(s)	21, 419, 919
AluBI	AGCT	3 cut(s)	71, 829, 964
AluI	AGCT	3 cut(s)	71, 829, 964
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	21, 917
Alw44I	GTGCAC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	853
AoxI	GGCC	2 cut(s)	354, 850
ApaLI	GTGCAC	1 cut(s)	432
ApoI	RAATTY	3 cut(s)	55, 557, 947
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	3 cut(s)	266, 321, 851
AsuHPI	GGTGA	3 cut(s)	64, 119, 854
AvaI	CYCGRG	1 cut(s)	853
AvaII	GGWCC	2 cut(s)	266, 321
BaeGI	GKGCMC	1 cut(s)	436
BanI	GGYRCC	2 cut(s)	180, 814
Bbv12I	GWGCWC	1 cut(s)	436
BccI	CCATC	6 cut(s)	254, 424, 518, 526, 764, 950
BceAI	ACGGC	3 cut(s)	530, 802, 1048
BciT130I	CCWGG	3 cut(s)	23, 421, 921
BcoDI	GTCTC	2 cut(s)	21, 917
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	2 cut(s)	429, 692
BfoI	RGCGCY	1 cut(s)	184
BglII	AGATCT	2 cut(s)	35, 775
BisI	GCNGC	1 cut(s)	1061
BlsI	GCNGC	1 cut(s)	1062
Bme1390I	CCNGG	3 cut(s)	23, 421, 921
Bme18I	GGWCC	2 cut(s)	266, 321
BmeT110I	CYCGRG	1 cut(s)	853
BmgT120I	GGNCC	3 cut(s)	266, 321, 851
BmiI	GGNNCC	2 cut(s)	182, 816
BmrFI	CCNGG	3 cut(s)	23, 421, 921
BmsI	GCATC	3 cut(s)	102, 568, 1024
BoxI	GACNNNNGTC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	3 cut(s)	22, 351, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 263, 299, 508
Bse3DI	GCAATG	1 cut(s)	293
Bse8I	GATNNNNATC	1 cut(s)	774
BseBI	CCWGG	3 cut(s)	23, 421, 921
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	22, 351, 919
BseGI	GGATG	3 cut(s)	15, 204, 416
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	4 cut(s)	195, 263, 299, 508
BseMI	GCAATG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	905
BseSI	GKGCMC	1 cut(s)	436
BshFI	GGCC	2 cut(s)	356, 852
BshNI	GGYRCC	2 cut(s)	180, 814
BshVI	ATCGAT	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	853
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	4 cut(s)	195, 263, 299, 508
BsmAI	GTCTC	2 cut(s)	21, 917
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	356, 852
Bso31I	GGTCTC	1 cut(s)	917
BsoBI	CYCGRG	1 cut(s)	853
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	5 cut(s)	35, 282, 412, 775, 931
BspACI	CCGC	1 cut(s)	1061
BspANI	GGCC	2 cut(s)	356, 852
BspDI	ATCGAT	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	182, 816
BspPI	GGATC	1 cut(s)	407
BspT107I	GGYRCC	2 cut(s)	180, 814
BspTNI	GGTCTC	1 cut(s)	917
BsrDI	GCAATG	1 cut(s)	293
BssECI	CCNNGG	3 cut(s)	22, 351, 919
BssMI	GATC	5 cut(s)	35, 282, 412, 775, 931
BssNAI	GTATAC	1 cut(s)	671
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	351
Bst1107I	GTATAC	1 cut(s)	671
Bst2UI	CCWGG	3 cut(s)	23, 421, 921
Bst4CI	ACNGT	2 cut(s)	162, 736
BstACI	GRCGYC	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	850
BstDEI	CTNAG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	15, 204, 416
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	5 cut(s)	38, 285, 415, 778, 934
BstMAI	GTCTC	2 cut(s)	21, 917
BstMBI	GATC	5 cut(s)	35, 282, 412, 775, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	519
BstNI	CCWGG	3 cut(s)	23, 421, 921
BstNSI	RCATGY	4 cut(s)	153, 377, 724, 792
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSCI	CCNGG	3 cut(s)	21, 419, 919
BstSLI	GKGCMC	1 cut(s)	436
BstX2I	RGATCY	3 cut(s)	35, 412, 775
BstYI	RGATCY	3 cut(s)	35, 412, 775
BstZ17I	GTATAC	1 cut(s)	671
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	356, 852
BsuTUI	ATCGAT	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	537
BtsCI	GGATG	3 cut(s)	15, 204, 416
BtsI	GCAGTG	1 cut(s)	1048
BtsIMutI	CAGTG	1 cut(s)	1048
Cac8I	GCNNGC	1 cut(s)	850
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	3 cut(s)	266, 321, 851
ClaI	ATCGAT	1 cut(s)	285
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	820
CspCI	CAANNNNNGTGG	2 cut(s)	158, 193
CviAII	CATG	7 cut(s)	150, 195, 374, 514, 721, 789, 823
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	1 cut(s)	367
DinI	GGCGCC	1 cut(s)	182
DpnI	GATC	5 cut(s)	37, 284, 414, 777, 933
DpnII	GATC	5 cut(s)	35, 282, 412, 775, 931
DrdI	GACNNNNNNGTC	1 cut(s)	165
DseDI	GACNNNNNNGTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	917
Eco32I	GATATC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	266, 321
Eco57I	CTGAAG	2 cut(s)	291, 1004
Eco88I	CYCGRG	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	3 cut(s)	21, 419, 919
EcoRV	GATATC	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	351
EgeI	GGCGCC	1 cut(s)	182
EheI	GGCGCC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	7 cut(s)	153, 198, 377, 517, 724, 792, 826
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	7 cut(s)	149, 194, 373, 513, 720, 788, 822
FblI	GTMKAC	2 cut(s)	670, 1005
Fnu4HI	GCNGC	1 cut(s)	1061
FokI	GGATG	3 cut(s)	22, 211, 403
Fsp4HI	GCNGC	1 cut(s)	1061
FspBI	CTAG	2 cut(s)	429, 692
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	1061
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	356, 852
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	7 cut(s)	153, 198, 377, 517, 724, 792, 826
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	3 cut(s)	426, 649, 938
HindII	GTYRAC	3 cut(s)	426, 649, 938
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	2 cut(s)	166, 473
HpaI	GTTAAC	1 cut(s)	426
HphI	GGTGA	3 cut(s)	64, 119, 854
Hpy166II	GTNNAC	6 cut(s)	426, 434, 649, 671, 938, 1006
Hpy188I	TCNGA	2 cut(s)	489, 531
Hpy188III	TCNNGA	7 cut(s)	7, 269, 319, 464, 692, 904, 1022
Hpy8I	GTNNAC	6 cut(s)	426, 434, 649, 671, 938, 1006
HpyCH4III	ACNGT	2 cut(s)	162, 736
HpyCH4V	TGCA	5 cut(s)	149, 231, 298, 434, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	519
HpyF3I	CTNAG	1 cut(s)	367
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	7 cut(s)	153, 198, 377, 517, 724, 792, 826
HspAI	GCGC	1 cut(s)	181
KasI	GGCGCC	1 cut(s)	180
KspAI	GTTAAC	1 cut(s)	426
Kzo9I	GATC	5 cut(s)	35, 282, 412, 775, 931
LmnI	GCTCC	2 cut(s)	76, 826
LweI	GCATC	3 cut(s)	102, 568, 1024
MaeI	CTAG	2 cut(s)	429, 692
MalI	GATC	5 cut(s)	37, 284, 414, 777, 933
MboI	GATC	5 cut(s)	35, 282, 412, 775, 931
MboII	GAAGA	7 cut(s)	146, 149, 198, 284, 301, 452, 1010
MflI	RGATCY	3 cut(s)	35, 412, 775
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	7 cut(s)	55, 96, 101, 557, 765, 947, 1034
Mly113I	GGCGCC	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	175
MseI	TTAA	5 cut(s)	99, 279, 425, 570, 713
MslI	CAYNNNNRTG	2 cut(s)	148, 812
MspR9I	CCNGG	3 cut(s)	23, 421, 921
MvaI	CCWGG	3 cut(s)	23, 421, 921
MwoI	GCNNNNNNNGC	1 cut(s)	519
NarI	GGCGCC	1 cut(s)	181
NdeII	GATC	5 cut(s)	35, 282, 412, 775, 931
NlaIII	CATG	7 cut(s)	153, 198, 377, 517, 724, 792, 826
NlaIV	GGNNCC	2 cut(s)	182, 816
NspI	RCATGY	4 cut(s)	153, 377, 724, 792
PceI	AGGCCT	1 cut(s)	356
PciI	ACATGT	3 cut(s)	373, 720, 788
PfeI	GAWTC	1 cut(s)	473
PflMI	CCANNNNNTGG	2 cut(s)	195, 263
PkrI	GCNGC	1 cut(s)	1062
PleI	GAGTC	1 cut(s)	174
PluTI	GGCGCC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	174
PscI	ACATGT	3 cut(s)	373, 720, 788
PshAI	GACNNNNGTC	1 cut(s)	246
PsiI	TTATAA	3 cut(s)	66, 927, 959
Psp6I	CCWGG	3 cut(s)	21, 419, 919
PspGI	CCWGG	3 cut(s)	21, 419, 919
PspN4I	GGNNCC	2 cut(s)	182, 816
PspPI	GGNCC	3 cut(s)	266, 321, 851
PsuI	RGATCY	3 cut(s)	35, 412, 775
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	2 cut(s)	148, 812
SaqAI	TTAA	5 cut(s)	99, 279, 425, 570, 713
SatI	GCNGC	1 cut(s)	1061
Sau3AI	GATC	5 cut(s)	35, 282, 412, 775, 931
Sau96I	GGNCC	3 cut(s)	266, 321, 851
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	3 cut(s)	23, 421, 921
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	3 cut(s)	102, 568, 1024
SfoI	GGCGCC	1 cut(s)	182
SinI	GGWCC	2 cut(s)	266, 321
SmiMI	CAYNNNNRTG	2 cut(s)	148, 812
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	7 cut(s)	55, 96, 101, 557, 765, 947, 1034
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	1 cut(s)	1061
SspDI	GGCGCC	1 cut(s)	180
SspMI	CTAG	2 cut(s)	429, 692
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	21, 419, 919
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	162, 736
TaqI	TCGA	4 cut(s)	118, 285, 450, 1039
TaqII	GACCGA	1 cut(s)	793
TasI	AATT	7 cut(s)	55, 96, 101, 557, 765, 947, 1034
TauI	GCSGC	1 cut(s)	1063
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	5 cut(s)	99, 279, 425, 570, 713
Tru9I	TTAA	5 cut(s)	99, 279, 425, 570, 713
TscAI	CASTG	1 cut(s)	1055
TspDTI	ATGAA	8 cut(s)	32, 183, 356, 550, 570, 863, 998, 1011
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	1055
Van91I	CCANNNNNTGG	2 cut(s)	195, 263
VneI	GTGCAC	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	266, 321
XapI	RAATTY	3 cut(s)	55, 557, 947
XbaI	TCTAGA	1 cut(s)	691
XceI	RCATGY	4 cut(s)	153, 377, 724, 792
XmiI	GTMKAC	2 cut(s)	670, 1005
XspI	CTAG	2 cut(s)	429, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.