Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

37590681 .. 37591921

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24736

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCATCAGTGGTGTGTTGCAGAAAGTAGTGTCGCGTCTAGTCCTGTTCATGCTACCCAAGTGAGGAGGACAATATCTGCAATCACTGGCCACCCATCCCTTGGTTATGCAGATACTTCTCTTGTACCAGAGGCTTCAGCTCCTGGTGATGATGCCAGCTTGGGAAAGGAGCAATACTCATGGGATGGTCACTCCATATTTGTAAGCAATTTGCCGTATGATGCCACTGTTGGACAACTTGGGAAGGAATTCAAGAAATTTGGGTCTATCACGTGGGACGGGATCCAAGTCAAAAAAAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

101

Amino Acids

10.81

Weight (kDa)

6.01

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccII	CGCG	1 cut(s)	35
AclWI	GGATC	2 cut(s)	277, 290
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	248, 257
AcuI	CTGAAG	1 cut(s)	120
AcvI	CACGTG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	63, 101
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	140, 159
AluI	AGCT	2 cut(s)	140, 159
AlwI	GGATC	2 cut(s)	277, 290
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	248, 257
Asp700I	GAANNNNTTC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	282
BbrPI	CACGTG	1 cut(s)	273
BccI	CCATC	2 cut(s)	103, 179
BceAI	ACGGC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	144
BfaI	CTAG	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	13, 142, 211
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BsaAI	YACGTR	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 101
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	95, 190
BseLI	CCNNNNNNNGG	2 cut(s)	63, 101
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	63, 101
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	277, 290
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	95, 190
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	95, 190
BtsIMutI	CAGTG	3 cut(s)	14, 84, 225
Cac8I	GCNNGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	143
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	50, 180
CviJI	RGCY	4 cut(s)	90, 134, 140, 159
CviKI_1	RGCY	4 cut(s)	90, 134, 140, 159
CviQI	GTAC	1 cut(s)	125
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	120
Eco72I	CACGTG	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	2 cut(s)	53, 183
FaiI	YATR	5 cut(s)	51, 108, 181, 197, 219
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	49, 179
FokI	GGATG	2 cut(s)	82, 197
FspBI	CTAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	90
HgaI	GACGC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	53, 183
HphI	GGTGA	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	4 cut(s)	4, 20, 80, 110
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	53, 183
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	145, 169
LpnPI	CCDG	6 cut(s)	57, 72, 129, 141, 156, 169
LweI	GCATC	3 cut(s)	13, 142, 211
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MflI	RGATCY	1 cut(s)	282
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	3 cut(s)	208, 248, 257
MluNI	TGGCCA	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	3 cut(s)	57, 60, 124
Mox20I	TGGCCA	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	35
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	2 cut(s)	53, 183
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	101
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
Ppu21I	YACGTR	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	142
PspCI	CACGTG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	282
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	3 cut(s)	142, 161, 275
SfaNI	GCATC	3 cut(s)	13, 142, 211
Sse9I	AATT	3 cut(s)	208, 248, 257
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	275
TasI	AATT	3 cut(s)	208, 248, 257
TscAI	CASTG	3 cut(s)	14, 91, 232
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	3 cut(s)	14, 91, 232
Van91I	CCANNNNNTGG	1 cut(s)	101
XapI	RAATTY	2 cut(s)	248, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.