Rh6DG203700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006409
Physical Location & Seq
Reverse (-)
36222290 .. 36226338
4049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG203700.1

Sequence Viewer

Length: 795 bp
ATGGTGGCTATTGCCATTTGTAATGAATTCATTTTGTTTAACATAGATGCTCGTATCATAGATCGTCAAATGTGGGCGTATGATGTAAGTAGAAACAAATGGTATTTAGTCATAGTTGAGAACTATGACTGCTATGGTATACGAGGAGTGGCTGTGGTTCTTGAAAAGACTATCTATGCCTTAACACACGTGTTGTTTGACACAGTTTTGGCATTATCTATTACAAGGGAACAAGTTGATGGAGATCTTGTATTTACATGTTCTCTATACTCGGTGATTGAGTTGCCGTACATGGAACTATTTCCATTGGGTGATGCAGGCCCGAGAAGCAGGCATTTGGGTCATTTGGGTAACCAGGAGTTTTGTCTTATCCAGAGTGGTCTCCTCTTTGATTATAATGATCGTCAACCTATAAAACTCAGCATTATAAAGCTTGTGGGAAAAAATTCAATGAATATAACAGATGAAATAGTCTATGAGGTGCATCTTCTGGATTTTCAGCAATTTAGAGTTAGACTCTACTTCTCCCCACCTGTTTATGAGGATATAGTGTCAAAACAAAAAGACAAAAGTGATACTGACTTCACCTTCAACCCAGAATCTGAAGTTGTCAAACCAGTCCAAGAAGAAAAGATTGCAACCCTGCCAAAACGAGAAGAAACAATAGTCGATACCAGCTCCCTCGAGTGCTCGGCTTTGCTTAATATCAAGCCCAAAGATCCCCCTCCCTTCAACACTGAGGTCACTTCCAAGCGGTTTGAACGTTCTGTAGATGGTCTTGCAAGAGTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

30.34

Weight (kDa)

5.06

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 396, 428
AccI GTMKAC 1 cut(s) 139
AciI CCGC 1 cut(s) 754
AclI AACGTT 1 cut(s) 763
AclWI GGATC 1 cut(s) 713
AcsI RAATTY 2 cut(s) 26, 445
AcuI CTGAAG 1 cut(s) 624
AcvI CACGTG 1 cut(s) 190
AfaI GTAC 1 cut(s) 290
AflIII ACRYGT 3 cut(s) 187, 189, 257
AgsI TTSAA 5 cut(s) 164, 450, 592, 733, 761
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 2 cut(s) 433, 678
AluI AGCT 2 cut(s) 433, 678
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 1 cut(s) 713
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 2 cut(s) 322, 683
AoxI GGCC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 26, 445
Asp700I GAANNNNTTC 2 cut(s) 300, 445
AspS9I GGNCC 1 cut(s) 320
AsuHPI GGTGA 3 cut(s) 286, 323, 577
AvaI CYCGRG 2 cut(s) 322, 683
BbrPI CACGTG 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 692
BccI CCATC 2 cut(s) 233, 767
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 768
BglII AGATCT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 356
BmeT110I CYCGRG 2 cut(s) 322, 683
BmgT120I GGNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 3 cut(s) 37, 304, 493
BplI GAGNNNNNCTC 2 cut(s) 501, 533
BsaAI YACGTR 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 386
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 234, 264
Bse1I ACTGG 1 cut(s) 617
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 356
BseJI GATNNNNATC 1 cut(s) 243
BseMII CTCAG 2 cut(s) 433, 729
BseNI ACTGG 1 cut(s) 617
BseRI GAGGAG 2 cut(s) 159, 374
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 692
BsiHKCI CYCGRG 2 cut(s) 322, 683
BsmAI GTCTC 1 cut(s) 386
BsnI GGCC 1 cut(s) 321
Bso31I GGTCTC 1 cut(s) 386
BsoBI CYCGRG 2 cut(s) 322, 683
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 4 cut(s) 61, 244, 400, 718
BspACI CCGC 1 cut(s) 754
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 432, 730
BspPI GGATC 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 386
BsrI ACTGG 1 cut(s) 617
BssMI GATC 4 cut(s) 61, 244, 400, 718
BssNAI GTATAC 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 319, 332
BstDEI CTNAG 2 cut(s) 419, 738
BstEII GGTNACC 1 cut(s) 350
BstKTI GATC 4 cut(s) 64, 247, 403, 721
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 4 cut(s) 61, 244, 400, 718
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 261
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 768
BstX2I RGATCY 2 cut(s) 244, 718
BstYI RGATCY 2 cut(s) 244, 718
BstZ17I GTATAC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 735
Cac8I GCNNGC 2 cut(s) 319, 332
CaiI CAGNNNCTG 1 cut(s) 602
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 258, 292
CviJI RGCY 7 cut(s) 8, 152, 321, 433, 678, 695, 712
CviKI_1 RGCY 7 cut(s) 8, 152, 321, 433, 678, 695, 712
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 419, 738
DpnI GATC 4 cut(s) 63, 246, 402, 720
DpnII GATC 4 cut(s) 61, 244, 400, 718
Eco31I GGTCTC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 624
Eco72I CACGTG 1 cut(s) 190
Eco88I CYCGRG 2 cut(s) 322, 683
Eco91I GGTNACC 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 354
FaeI CATG 2 cut(s) 261, 295
FatI CATG 2 cut(s) 257, 291
FblI GTMKAC 1 cut(s) 139
HaeIII GGCC 1 cut(s) 321
Hin1II CATG 2 cut(s) 261, 295
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 2 cut(s) 516, 599
HphI GGTGA 3 cut(s) 286, 323, 577
Hpy166II GTNNAC 2 cut(s) 140, 407
Hpy188I TCNGA 1 cut(s) 604
Hpy188III TCNNGA 3 cut(s) 161, 373, 491
Hpy8I GTNNAC 2 cut(s) 140, 407
HpyAV CCTTC 2 cut(s) 598, 739
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 2 cut(s) 189, 763
HpyCH4V TGCA 4 cut(s) 317, 484, 638, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 2 cut(s) 419, 738
HpySE526I ACGT 2 cut(s) 189, 763
Hsp92II CATG 2 cut(s) 261, 295
Kzo9I GATC 4 cut(s) 61, 244, 400, 718
LmnI GCTCC 1 cut(s) 683
LweI GCATC 3 cut(s) 37, 304, 493
MaeII ACGT 2 cut(s) 189, 763
MaeIII GTNAC 2 cut(s) 350, 742
MalI GATC 4 cut(s) 63, 246, 402, 720
MboI GATC 4 cut(s) 61, 244, 400, 718
MboII GAAGA 3 cut(s) 479, 638, 668
MflI RGATCY 2 cut(s) 244, 718
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 3 cut(s) 26, 445, 503
MlyI GAGTC 1 cut(s) 510
MnlI CCTC 7 cut(s) 137, 395, 472, 535, 692, 733, 735
MroXI GAANNNNTTC 2 cut(s) 300, 445
MseI TTAA 3 cut(s) 39, 182, 702
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 1 cut(s) 327
NdeII GATC 4 cut(s) 61, 244, 400, 718
NlaIII CATG 2 cut(s) 261, 295
NmeAIII GCCGAG 1 cut(s) 671
NmuCI GTSAC 1 cut(s) 742
NspI RCATGY 1 cut(s) 261
PaeR7I CTCGAG 1 cut(s) 683
PciI ACATGT 1 cut(s) 257
PdmI GAANNNNTTC 2 cut(s) 300, 445
PfeI GAWTC 1 cut(s) 599
PleI GAGTC 1 cut(s) 510
PmaCI CACGTG 1 cut(s) 190
PmlI CACGTG 1 cut(s) 190
PpsI GAGTC 1 cut(s) 510
Ppu21I YACGTR 1 cut(s) 190
PscI ACATGT 1 cut(s) 257
PsiI TTATAA 2 cut(s) 396, 428
Psp1406I AACGTT 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 354
PspCI CACGTG 1 cut(s) 190
PspEI GGTNACC 1 cut(s) 350
PspGI CCWGG 1 cut(s) 354
PspPI GGNCC 1 cut(s) 320
PspXI VCTCGAGB 1 cut(s) 683
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 2 cut(s) 244, 718
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 39, 182, 702
Sau3AI GATC 4 cut(s) 61, 244, 400, 718
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 1 cut(s) 510
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 692
SetI ASST 9 cut(s) 192, 412, 435, 483, 535, 590, 680, 744, 766
SfaNI GCATC 3 cut(s) 37, 304, 493
SfcI CTRYAG 1 cut(s) 768
Sfr274I CTCGAG 1 cut(s) 683
SlaI CTCGAG 1 cut(s) 683
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 3 cut(s) 26, 445, 503
SsiI CCGC 1 cut(s) 754
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 2 cut(s) 192, 766
TaqI TCGA 2 cut(s) 669, 684
TasI AATT 3 cut(s) 26, 445, 503
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 3 cut(s) 39, 182, 702
Tru9I TTAA 3 cut(s) 39, 182, 702
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 1 cut(s) 742
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 4 cut(s) 19, 39, 467, 480
TspRI CASTG 1 cut(s) 742
XapI RAATTY 2 cut(s) 26, 445
XceI RCATGY 1 cut(s) 261
XhoI CTCGAG 1 cut(s) 683
XmiI GTMKAC 1 cut(s) 139
XmnI GAANNNNTTC 2 cut(s) 300, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.