Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

36220868 .. 36222227

Gene Structure 1360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG203600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCCCAGAAGATATGTACAAGTTTTATCAAAGATTCTAGTGCTTCATATAATGGCAATATGATTACACTGGATGTAATTAAATCCATAAATGATGAATGTCGTACATGTGAAATAGAGAGTGTAGATGCTCAAGAATCTCCTCAGCAAGGGGTGACTGTATTAGTAACCGGATACTTGGTTGGAAAAGACAACGTGGGAAGGAAATTTGCCCAAACATTCATCCTAGCTCCACTGGAAAAGGGGTACTTCATCTTCAAGGATATGTTTAGGTATATTAAGGACAATGAATCATCACAAACAAACATCATTGATGAACAAGATTTTGAACAAGGATCAGTTATTCAATCAAGTCAGAGTAAAGATCTTGCAGATACAACCCCGGAAGTCCAGGAGGATGCTTTAAAGAAATCTTATGCATCAGTGGTTGCAGAAAGTAGTGTCGCGTCTAGTCCTGTTCATGCTACCCAAGTGAGGAGGACAATATCTGCAATCACTGGCCACCCATCCCTTGGTTATGCAGATACTTCTCTTGTACCAGAGGCTTCAGCTCCTGGTGATGATGCCAGCTTGGGAAAGGAGCAATACTCATGGGATGGTATACTGCTATGTCAACTTTTAGGGTTTCAGGGTTTCCTGTTTAGTTCAAAAAGAAAAAATATTAGCCAGCTCCCGGTGATTCAATTGCTATGTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

233

Amino Acids

25.51

Weight (kDa)

4.75

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	27 - 92	4.4e-15	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	446
AclWI	GGATC	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	4 cut(s)	19, 106, 248, 537
AfiI	CCNNNNNNNGG	4 cut(s)	149, 474, 512, 673
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	5 cut(s)	259, 329, 347, 648, 683
AjnI	CCWGG	2 cut(s)	390, 553
AluBI	AGCT	4 cut(s)	230, 551, 570, 670
AluI	AGCT	4 cut(s)	230, 551, 570, 670
AlwI	GGATC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	499
ApoI	RAATTY	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	383, 674
AsuHPI	GGTGA	3 cut(s)	166, 569, 688
BalI	TGGCCA	1 cut(s)	501
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BbvCI	CCTCAGC	1 cut(s)	144
BccI	CCATC	2 cut(s)	514, 590
BciT130I	CCWGG	2 cut(s)	392, 555
BciVI	GTATCC	1 cut(s)	167
BcnI	CCSGG	2 cut(s)	383, 674
BfaI	CTAG	3 cut(s)	39, 227, 450
BfuI	GTATCC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	364
Bme1390I	CCNGG	4 cut(s)	383, 392, 555, 674
BmrFI	CCNGG	4 cut(s)	383, 392, 555, 674
BmsI	GCATC	4 cut(s)	118, 388, 428, 553
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	117
BpuMI	CCSGG	2 cut(s)	383, 674
BsaJI	CCNNGG	2 cut(s)	381, 511
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 474, 512, 673
Bse1I	ACTGG	3 cut(s)	75, 240, 502
BseBI	CCWGG	2 cut(s)	392, 555
BseDI	CCNNGG	2 cut(s)	381, 511
BseGI	GGATG	5 cut(s)	79, 222, 403, 506, 601
BseLI	CCNNNNNNNGG	4 cut(s)	149, 474, 512, 673
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	3 cut(s)	75, 240, 502
BseRI	GAGGAG	2 cut(s)	132, 490
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	501
BsiSI	CCGG	3 cut(s)	171, 383, 674
BslI	CCNNNNNNNGG	4 cut(s)	149, 474, 512, 673
BsnI	GGCC	1 cut(s)	501
Bsp1407I	TGTACA	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	335, 364
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	446
BspPI	GGATC	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	17
BsrI	ACTGG	3 cut(s)	75, 240, 502
BssECI	CCNNGG	2 cut(s)	381, 511
BssMI	GATC	2 cut(s)	335, 364
BssNAI	GTATAC	1 cut(s)	602
BssT1I	CCWWGG	1 cut(s)	511
Bst1107I	GTATAC	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	392, 555
Bst4CI	ACNGT	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	568, 668
BstDEI	CTNAG	1 cut(s)	144
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	5 cut(s)	79, 222, 403, 506, 601
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	2 cut(s)	338, 367
BstMBI	GATC	2 cut(s)	335, 364
BstNI	CCWGG	2 cut(s)	392, 555
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	4 cut(s)	381, 390, 553, 672
BstUI	CGCG	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BstZ17I	GTATAC	1 cut(s)	602
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	501
BtsCI	GGATG	5 cut(s)	79, 222, 403, 506, 601
BtsIMutI	CAGTG	4 cut(s)	68, 233, 429, 495
Cac8I	GCNNGC	2 cut(s)	568, 668
CaiI	CAGNNNCTG	1 cut(s)	554
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	4 cut(s)	18, 105, 247, 536
CviAII	CATG	3 cut(s)	108, 461, 591
CviJI	RGCY	7 cut(s)	230, 501, 545, 551, 570, 666, 670
CviKI_1	RGCY	7 cut(s)	230, 501, 545, 551, 570, 666, 670
CviQI	GTAC	4 cut(s)	18, 105, 247, 536
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	337, 366
DpnII	GATC	2 cut(s)	335, 364
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	531
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	390, 553
EcoT14I	CCWWGG	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	3 cut(s)	111, 464, 594
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	3 cut(s)	107, 460, 590
FblI	GTMKAC	1 cut(s)	601
FokI	GGATG	5 cut(s)	86, 209, 410, 493, 608
FspBI	CTAG	3 cut(s)	39, 227, 450
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	3 cut(s)	171, 383, 674
HgaI	GACGC	1 cut(s)	435
Hin1II	CATG	3 cut(s)	111, 464, 594
HincII	GTYRAC	2 cut(s)	614, 695
HindII	GTYRAC	2 cut(s)	614, 695
HinfI	GANTC	4 cut(s)	35, 137, 290, 679
HpaII	CCGG	3 cut(s)	171, 383, 674
HphI	GGTGA	3 cut(s)	166, 569, 688
Hpy166II	GTNNAC	3 cut(s)	602, 614, 695
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	3 cut(s)	602, 614, 695
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	371, 419, 431, 491, 521
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	111, 464, 594
Kzo9I	GATC	2 cut(s)	335, 364
LmnI	GCTCC	4 cut(s)	235, 556, 580, 675
LweI	GCATC	4 cut(s)	118, 388, 428, 553
MaeI	CTAG	3 cut(s)	39, 227, 450
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	154, 166
MalI	GATC	2 cut(s)	337, 366
MboI	GATC	2 cut(s)	335, 364
MboII	GAAGA	2 cut(s)	22, 247
MfeI	CAATTG	1 cut(s)	683
MflI	RGATCY	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	3 cut(s)	78, 206, 683
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	153, 388, 468, 471, 535
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	421
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	3 cut(s)	81, 279, 404
Msp20I	TGGCCA	1 cut(s)	501
MspI	CCGG	3 cut(s)	171, 383, 674
MspR9I	CCNGG	4 cut(s)	383, 392, 555, 674
MunI	CAATTG	1 cut(s)	683
MvaI	CCWGG	2 cut(s)	392, 555
MvnI	CGCG	1 cut(s)	446
NciI	CCSGG	2 cut(s)	383, 674
NdeII	GATC	2 cut(s)	335, 364
NlaIII	CATG	3 cut(s)	111, 464, 594
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	111
PciI	ACATGT	1 cut(s)	107
PfeI	GAWTC	4 cut(s)	35, 137, 290, 679
PflMI	CCANNNNNTGG	1 cut(s)	512
PfoI	TCCNGGA	1 cut(s)	390
PscI	ACATGT	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	390, 553
PspGI	CCWGG	2 cut(s)	390, 553
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	4 cut(s)	19, 106, 248, 537
RsaNI	GTAC	4 cut(s)	18, 105, 247, 536
SaqAI	TTAA	3 cut(s)	81, 279, 404
Sau3AI	GATC	2 cut(s)	335, 364
ScrFI	CCNGG	4 cut(s)	383, 392, 555, 674
SetI	ASST	6 cut(s)	198, 232, 275, 553, 572, 672
SfaNI	GCATC	4 cut(s)	118, 388, 428, 553
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	78, 206, 683
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	3 cut(s)	39, 227, 450
StyD4I	CCNGG	4 cut(s)	381, 390, 553, 672
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	198
TasI	AATT	3 cut(s)	78, 206, 683
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	4 cut(s)	35, 137, 290, 679
Tru1I	TTAA	3 cut(s)	81, 279, 404
Tru9I	TTAA	3 cut(s)	81, 279, 404
TscAI	CASTG	4 cut(s)	75, 240, 429, 502
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	7 cut(s)	36, 111, 211, 241, 303, 330, 449
TspRI	CASTG	4 cut(s)	75, 240, 429, 502
Van91I	CCANNNNNTGG	1 cut(s)	512
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	3 cut(s)	39, 227, 450
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.