Rh6AG207700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006409
Physical Location & Seq
Reverse (-)
37023189 .. 37023819
631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG207700.1

Sequence Viewer

Length: 312 bp
ATGGATAAGGCTTCAACTATCAGAATCGGGGATTTTCAAGCAGTGATTGAGGAAGAGAGAACCCCCCACCCGAGTTGGCAATGGGAGAAGATGGAGGTACCACCTGCTGTAGCTTTGGTAAGAATAAATTCAGGAACCATGGTGAGCTTTCTCGATCCAAGTCTTCCGGTGGACACAATGGAGAGTATCAGCGCCCAAGGGGCAGCAACGAAACCTCACAATTTGTCAAGGAAATTGGCGAACACAACCGGAGGGGGTTGCATTTTTCTTTCCTTATTAACCTTCACTTGCCTTTTGTTGTTGTATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.28

Weight (kDa)

5.55

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
Acc65I GGTACC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 97
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 2 cut(s) 15, 38
AluBI AGCT 2 cut(s) 113, 147
AluI AGCT 2 cut(s) 113, 147
AlwI GGATC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 127
Asp718I GGTACC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 70
BanI GGYRCC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 85
BfmI CTRYAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 112
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 99, 136
BpiI GAAGAC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 138, 196
BsaWI WCCGGW 2 cut(s) 166, 248
Bse3DI GCAATG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 138, 196
BseMI GCAATG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 2 cut(s) 167, 249
BsoBI CYCGRG 1 cut(s) 70
Bsp143I GATC 1 cut(s) 154
Bsp19I CCATGG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 99, 136
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 138, 196
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 2 cut(s) 138, 196
Bst6I CTCTTC 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
BveI ACCTGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 98
CspCI CAANNNNNGTGG 2 cut(s) 56, 91
CviAII CATG 1 cut(s) 139
CviJI RGCY 3 cut(s) 11, 113, 147
CviKI_1 RGCY 3 cut(s) 11, 113, 147
CviQI GTAC 1 cut(s) 98
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 138, 196
Eco88I CYCGRG 1 cut(s) 70
EcoT14I CCWWGG 2 cut(s) 138, 196
ErhI CCWWGG 2 cut(s) 138, 196
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 140, 306
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
GlaI GCGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 195
HapII CCGG 2 cut(s) 167, 249
HhaI GCGC 1 cut(s) 194
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 1 cut(s) 24
HpaII CCGG 2 cut(s) 167, 249
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 132, 152
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 192
KpnI GGTACC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 4 cut(s) 117, 117, 180, 262
Lsp1109I GCAGC 1 cut(s) 215
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 65, 100, 155
MluCI AATT 4 cut(s) 127, 220, 233, 307
MnlI CCTC 4 cut(s) 43, 88, 225, 245
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 1 cut(s) 278
MspI CCGG 2 cut(s) 167, 249
MwoI GCNNNNNNNGC 1 cut(s) 200
NcoI CCATGG 1 cut(s) 138
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 2 cut(s) 99, 136
PaqCI CACCTGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 99, 136
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 154
SetI ASST 6 cut(s) 99, 106, 115, 149, 217, 284
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 4 cut(s) 127, 220, 233, 307
StyI CCWWGG 2 cut(s) 138, 196
TaqI TCGA 1 cut(s) 153
TasI AATT 4 cut(s) 127, 220, 233, 307
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 48
TseI GCWGC 1 cut(s) 203
TspRI CASTG 1 cut(s) 48
XapI RAATTY 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.