Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Forward (+)

5363015 .. 5363590

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG075000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTGGCTGACCTTGCCTGAGCAAGTTTACGGATTTTACAAAGACAGTAGCAAGCTCGCTCGTCCTGAAGATAATGGAGTCATGAGCATTACAACCACCAAAGAAAAAATCAAAGAGAAGTTGATAGCTCTTCAAAATCTCTGTACTTGGAGATCCTTGCATGTGGTAAATGTTGATGCTCAAGAACATTCTTGTAATGGGGGAATTTTCGTCGTAGTAACTGGGTATTTAACTGAAGAAGACAATCAAAGGAAGAAATTTTTTCTTGGCTCCACAAGCCGAAGGAGGCTACTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

99

Amino Acids

11.38

Weight (kDa)

8.86

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	6 - 87	1e-08	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	204, 257
AcuI	CTGAAG	2 cut(s)	87, 255
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	2 cut(s)	55, 128
AluI	AGCT	2 cut(s)	55, 128
AlwI	GGATC	1 cut(s)	147
ApoI	RAATTY	2 cut(s)	204, 257
BbsI	GAAGAC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	53, 57
BstDEI	CTNAG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 276
BstNSI	RCATGY	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	53, 57
CciI	TCATGA	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	82, 161
CviJI	RGCY	6 cut(s)	7, 55, 128, 270, 279, 289
CviKI_1	RGCY	6 cut(s)	7, 55, 128, 270, 279, 289
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco57I	CTGAAG	2 cut(s)	87, 255
FaeI	CATG	2 cut(s)	85, 164
FaiI	YATR	2 cut(s)	83, 162
FatI	CATG	2 cut(s)	81, 160
Hin1II	CATG	2 cut(s)	85, 164
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188III	TCNNGA	3 cut(s)	65, 82, 182
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 276
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	85, 164
Kzo9I	GATC	1 cut(s)	152
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	3 cut(s)	30, 78, 207
LweI	GCATC	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	5 cut(s)	80, 122, 248, 251, 265
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	2 cut(s)	204, 257
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	13, 276
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	85, 164
NlaIV	GGNNCC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	164
PagI	TCATGA	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	87
SetI	ASST	3 cut(s)	14, 57, 130
SfaNI	GCATC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	204, 257
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	2 cut(s)	204, 257
TatI	WGTACW	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TspGWI	ACGGA	1 cut(s)	45
XapI	RAATTY	2 cut(s)	204, 257
XceI	RCATGY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.