Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

12711489 .. 12712400

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0095000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATTCAAACAATAATGAAATAATCCATGACTTCCCACCATTCTTCAAAGTCTTCAAAGATGGTACCATAGAGCGGTACATGCCACTCCATGGCCACGTTCCGGCGGGACTCGACCCAACAACCGGAGTCCAATCCAAAGACGTGGTGGTGTCGCCTGAAACCGGAGTAAAGGCTCGTATTTTCATCCCCAAAATCAACGGCGGAAGTCAGAAGTTGCCCCTTTTAGTCCATTACCACGGTGGAGGCTTCTGCATGGGATCACCCTTCGGGGAAATTGGAAAGAAGTTCCTTTCGTCTCTAGTATTCAAAGCCAACATCATTTTAGTTTCTGTTGACTACAGGCTAGCCCCAGAGCATCCTCTACCAATTGCCTACGACGATTCCTTAGCCGCTTTGCACTGGATCGCTTCCCACTCTAATAGACAAGGGCCTGAAGCTTGGCTCAACGAGTATGCAGATCTGGACAGGGTTTTCTTGGGCGGTGAGAGTGCTGGAGCCAACATCGCTCATTATGTTGCGGTCCAAGCTGGGGTTAATGTTCCAGTGGGGTTGAACATTGTTGGCTTAGTTATGGTGCATCCTTTCTTTGGAGGTAAAGAGTGTGACAAGATGTATCAGTTTTTAAGCTCAACGAGTTCAGGGTGCGATGATGATCCGAAACTGAACCCGGCAGCGGATCCGAACTTGGTGAAATTGCCATGTGGGAAGGTGTTGGTTTGTGTTGCGGAGAAAGATTGGCTGAGAAATAGAGGAGTGAGCTACCATGAGACTCTAGAGAAACTGAAAGGGGAAGGGTTTGCGGAGTTGTTTGAGACAAAAGGAGAGGACCATTGCTTTCATTTGTTCAACCCCAATGCCGACAAGGCTGGCCATCTGCTGCAAAAAGTGGTTGATTTCTTCAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

303

Amino Acids

33.2

Weight (kDa)

5.94

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	61 - 175	2.6e-07	Carboxylesterase family
BD-FAE	PF20434	68 - 178	6.1e-11	BD-FAE
Abhydrolase_3	PF07859	76 - 281	5.6e-43	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	76
AciI	CCGC	9 cut(s)	76, 107, 204, 393, 483, 521, 677, 728, 803
AclWI	GGATC	5 cut(s)	268, 413, 650, 674, 687
AcoI	YGGCCR	2 cut(s)	94, 871
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	2 cut(s)	67, 80
AfiI	CCNNNNNNNGG	8 cut(s)	75, 92, 103, 125, 164, 532, 590, 676
AgsI	TTSAA	7 cut(s)	9, 49, 58, 310, 556, 850, 904
AjiI	CACGTC	1 cut(s)	145
AluBI	AGCT	4 cut(s)	440, 530, 630, 762
AluI	AGCT	4 cut(s)	440, 530, 630, 762
Alw26I	GTCTC	3 cut(s)	303, 764, 809
AlwI	GGATC	5 cut(s)	268, 413, 650, 674, 687
AoxI	GGCC	3 cut(s)	94, 431, 871
ApeKI	GCWGC	2 cut(s)	674, 880
Asp718I	GGTACC	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	431, 523, 829
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	3 cut(s)	255, 497, 703
AsuNHI	GCTAGC	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	523, 829
BalI	TGGCCA	2 cut(s)	96, 873
BamHI	GGATCC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	686, 867
BccI	CCATC	2 cut(s)	56, 882
BceAI	ACGGC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	3 cut(s)	303, 764, 809
BfaI	CTAG	3 cut(s)	302, 347, 776
BfmI	CTRYAG	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	866
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	3 cut(s)	393, 675, 881
BlsI	GCNGC	3 cut(s)	394, 676, 882
Bme1390I	CCNGG	1 cut(s)	671
Bme18I	GGWCC	2 cut(s)	523, 829
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	431, 523, 829
BmiI	GGNNCC	3 cut(s)	67, 499, 681
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	2 cut(s)	367, 589
BmtI	GCTAGC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	671
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	2 cut(s)	91, 238
BsaWI	WCCGGW	2 cut(s)	125, 164
Bsc4I	CCNNNNNNNGG	8 cut(s)	75, 92, 103, 125, 164, 532, 590, 676
Bse1I	ACTGG	2 cut(s)	407, 545
Bse3DI	GCAATG	1 cut(s)	832
Bse8I	GATNNNNATC	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	91, 238
BseGI	GGATG	3 cut(s)	186, 358, 580
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	8 cut(s)	75, 92, 103, 125, 164, 532, 590, 676
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	2 cut(s)	407, 545
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	2 cut(s)	686, 867
BseYI	CCCAGC	1 cut(s)	530
BshFI	GGCC	3 cut(s)	96, 433, 873
BshNI	GGYRCC	1 cut(s)	65
BsiSI	CCGG	4 cut(s)	104, 126, 165, 671
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	8 cut(s)	75, 92, 103, 125, 164, 532, 590, 676
BsmAI	GTCTC	3 cut(s)	303, 764, 809
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	96, 433, 873
Bsp143I	GATC	5 cut(s)	260, 405, 460, 655, 679
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	9 cut(s)	76, 107, 204, 393, 483, 521, 677, 728, 803
BspANI	GGCC	3 cut(s)	96, 433, 873
BspCNI	CTCAG	1 cut(s)	735
BspLI	GGNNCC	3 cut(s)	67, 499, 681
BspOI	GCTAGC	1 cut(s)	350
BspPI	GGATC	5 cut(s)	268, 413, 650, 674, 687
BspT107I	GGYRCC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	832
BsrI	ACTGG	2 cut(s)	407, 545
BssECI	CCNNGG	2 cut(s)	91, 238
BssMI	GATC	5 cut(s)	260, 405, 460, 655, 679
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	348, 871
BstDEI	CTNAG	3 cut(s)	388, 568, 743
BstDSI	CCRYGG	2 cut(s)	91, 238
BstF5I	GGATG	3 cut(s)	186, 358, 580
BstKTI	GATC	5 cut(s)	263, 408, 463, 658, 682
BstMAI	GTCTC	3 cut(s)	303, 764, 809
BstMBI	GATC	5 cut(s)	260, 405, 460, 655, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 506, 527, 866
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	686, 867
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	460, 679
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	2 cut(s)	460, 679
BsuRI	GGCC	3 cut(s)	96, 433, 873
BtgI	CCRYGG	2 cut(s)	91, 238
BtgZI	GCGATG	2 cut(s)	490, 663
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	186, 358, 580
BtsIMutI	CAGTG	2 cut(s)	400, 552
Cac8I	GCNNGC	2 cut(s)	348, 871
Cfr13I	GGNCC	3 cut(s)	431, 523, 829
Csp6I	GTAC	2 cut(s)	66, 79
CviAII	CATG	6 cut(s)	29, 82, 92, 256, 702, 767
CviQI	GTAC	2 cut(s)	66, 79
DdeI	CTNAG	3 cut(s)	388, 568, 743
DpnI	GATC	5 cut(s)	262, 407, 462, 657, 681
DpnII	GATC	5 cut(s)	260, 405, 460, 655, 679
EaeI	YGGCCR	2 cut(s)	94, 871
EciI	GGCGGA	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	523, 829
Eco57I	CTGAAG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	6 cut(s)	32, 85, 95, 259, 705, 770
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	6 cut(s)	28, 81, 91, 255, 701, 766
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	393, 675, 881
FokI	GGATG	3 cut(s)	173, 345, 567
Fsp4HI	GCNGC	3 cut(s)	393, 675, 881
FspBI	CTAG	3 cut(s)	302, 347, 776
GluI	GCNGC	3 cut(s)	393, 675, 881
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	96, 433, 873
HapII	CCGG	4 cut(s)	104, 126, 165, 671
Hin1II	CATG	6 cut(s)	32, 85, 95, 259, 705, 770
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	5 cut(s)	5, 111, 129, 383, 772
HpaII	CCGG	4 cut(s)	104, 126, 165, 671
HphI	GGTGA	3 cut(s)	255, 497, 703
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	213, 660, 684, 911
Hpy188III	TCNNGA	2 cut(s)	464, 776
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	277, 703, 788
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	2 cut(s)	99, 144
HpyCH4V	TGCA	5 cut(s)	255, 400, 458, 580, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 506, 527, 866
HpyF3I	CTNAG	3 cut(s)	388, 568, 743
HpySE526I	ACGT	2 cut(s)	99, 144
Hsp92II	CATG	6 cut(s)	32, 85, 95, 259, 705, 770
KpnI	GGTACC	1 cut(s)	69
Kzo9I	GATC	5 cut(s)	260, 405, 460, 655, 679
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	2 cut(s)	686, 867
LweI	GCATC	2 cut(s)	367, 589
MaeI	CTAG	3 cut(s)	302, 347, 776
MaeII	ACGT	2 cut(s)	99, 144
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	5 cut(s)	262, 407, 462, 657, 681
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	5 cut(s)	260, 405, 460, 655, 679
MboII	GAAGA	3 cut(s)	37, 46, 892
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	2 cut(s)	460, 679
MlsI	TGGCCA	2 cut(s)	96, 873
MluCI	AATT	3 cut(s)	276, 369, 695
MluNI	TGGCCA	2 cut(s)	96, 873
MlyI	GAGTC	3 cut(s)	105, 138, 766
MnlI	CCTC	5 cut(s)	239, 372, 587, 746, 820
Mox20I	TGGCCA	2 cut(s)	96, 873
MscI	TGGCCA	2 cut(s)	96, 873
MseI	TTAA	2 cut(s)	537, 626
Msp20I	TGGCCA	2 cut(s)	96, 873
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	4 cut(s)	104, 126, 165, 671
MspR9I	CCNGG	1 cut(s)	671
MunI	CAATTG	1 cut(s)	369
MwoI	GCNNNNNNNGC	4 cut(s)	82, 506, 527, 866
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	5 cut(s)	260, 405, 460, 655, 679
NheI	GCTAGC	1 cut(s)	346
NlaIII	CATG	6 cut(s)	32, 85, 95, 259, 705, 770
NlaIV	GGNNCC	3 cut(s)	67, 499, 681
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	5, 383
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	394, 676, 882
PleI	GAGTC	3 cut(s)	105, 137, 766
PpsI	GAGTC	3 cut(s)	105, 137, 766
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	3 cut(s)	67, 499, 681
PspPI	GGNCC	3 cut(s)	431, 523, 829
PsuI	RGATCY	2 cut(s)	460, 679
RsaI	GTAC	2 cut(s)	67, 80
RsaNI	GTAC	2 cut(s)	66, 79
SaqAI	TTAA	2 cut(s)	537, 626
SatI	GCNGC	3 cut(s)	393, 675, 881
Sau3AI	GATC	5 cut(s)	260, 405, 460, 655, 679
Sau96I	GGNCC	3 cut(s)	431, 523, 829
SchI	GAGTC	3 cut(s)	105, 138, 766
ScrFI	CCNGG	1 cut(s)	671
SetI	ASST	8 cut(s)	102, 147, 442, 532, 598, 632, 714, 764
SfaNI	GCATC	2 cut(s)	367, 589
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	2 cut(s)	523, 829
Sse9I	AATT	3 cut(s)	276, 369, 695
SsiI	CCGC	9 cut(s)	76, 107, 204, 393, 483, 521, 677, 728, 803
SspMI	CTAG	3 cut(s)	302, 347, 776
StyD4I	CCNGG	1 cut(s)	669
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	2 cut(s)	102, 147
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	276, 369, 695
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	5, 383
Tru1I	TTAA	2 cut(s)	537, 626
Tru9I	TTAA	2 cut(s)	537, 626
TscAI	CASTG	2 cut(s)	407, 552
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	2 cut(s)	674, 880
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	3 cut(s)	33, 175, 830
TspRI	CASTG	2 cut(s)	407, 552
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	523, 829
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 239
XspI	CTAG	3 cut(s)	302, 347, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.