Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

39632867 .. 39638573

Gene Structure 5707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG210500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAATATAACAGATGAAATAGTCTATGAGGTGCATCTTCTAGATTTTCAGCAATTTAGAGTTAGACTCTGCTTCTCCCCACCTGTTTGTGAGGATATTGTGTCAAAACAAGAAGACAAAAGTGATACTGACTTCACCTTCAATCCAGAATCTGAAGTTGTCAAACCAGTACAAGAAGAAGATATTACAACCTTGCCAAAACGAGAAGAAATAATAGTCGATACTAGTTCCCTCGAGTGCTCGGCTTTGCTTAATATCAAGCCAAAAGATCCCCCTCCCTTCAACACTGAGGTCACTTCCAAGCGGATGGTCTTGCAAGAGTTAGATAGTTCTAGCCGTGCCCAACTTGTCGGCACCGCATTTGTGGAGTCTTATTACCATTTTCTTCTCCACGCCCCAGAAGATATGTACAAGTTTTATCAAGATTCTAGTGCTTCATATAATGGCAATATGATTACACTGGATGCAATTAAATCCATAGATGATGAATGTCGTACATGTGAAATAGAGAGTGTAGATGCTCAAGAATCTCCTCAGAAAGGGGTGACTGTATTAGTAACCGGATACTTGGTTGGAAAAGACAACGTGGGAAGGAAATTTGCCAAACATTCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

205

Amino Acids

23.2

Weight (kDa)

4.57

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	117 - 202	9.5e-10	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AciI	CCGC	2 cut(s)	304, 357
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	3 cut(s)	171, 410, 496
AfiI	CCNNNNNNNGG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	142, 283
AhlI	ACTAGT	1 cut(s)	224
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	596
AsuHPI	GGTGA	2 cut(s)	127, 556
AvaI	CYCGRG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	242
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	557
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	5 cut(s)	41, 225, 333, 429, 616
BfuI	GTATCC	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	355
BmsI	GCATC	3 cut(s)	43, 454, 508
BpiI	GAAGAC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpuEI	CTTGAG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse1I	ACTGG	2 cut(s)	167, 465
BseGI	GGATG	3 cut(s)	312, 469, 611
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMII	CTCAG	2 cut(s)	279, 548
BseNI	ACTGG	2 cut(s)	167, 465
BseRI	GAGGAG	1 cut(s)	522
BseSI	GKGCMC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	539
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	242, 343
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	304, 357
BspCNI	CTCAG	2 cut(s)	280, 547
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	353
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	167, 465
BssMI	GATC	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	550
BstAUI	TGTACA	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	288, 534
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	3 cut(s)	312, 469, 611
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	501
BstSLI	GKGCMC	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	557
BtsCI	GGATG	3 cut(s)	312, 469, 611
BtsIMutI	CAGTG	2 cut(s)	285, 458
CaiI	CAGNNNCTG	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	170, 409, 495
CviAII	CATG	1 cut(s)	498
CviJI	RGCY	3 cut(s)	245, 262, 336
CviKI_1	RGCY	3 cut(s)	245, 262, 336
CviQI	GTAC	3 cut(s)	170, 409, 495
DdeI	CTNAG	2 cut(s)	288, 534
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	537
FaeI	CATG	1 cut(s)	501
FaiI	YATR	8 cut(s)	8, 27, 407, 439, 441, 452, 479, 499
FatI	CATG	1 cut(s)	497
FokI	GGATG	3 cut(s)	319, 476, 598
FspBI	CTAG	5 cut(s)	41, 225, 333, 429, 616
HapII	CCGG	1 cut(s)	561
Hin1II	CATG	1 cut(s)	501
HinfI	GANTC	5 cut(s)	66, 149, 368, 425, 527
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	2 cut(s)	127, 556
Hpy188I	TCNGA	2 cut(s)	154, 537
Hpy188III	TCNNGA	4 cut(s)	41, 146, 422, 524
HpyAV	CCTTC	3 cut(s)	148, 289, 585
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	3 cut(s)	34, 316, 467
HpyF3I	CTNAG	2 cut(s)	288, 534
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	1 cut(s)	501
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	6 cut(s)	96, 159, 180, 411, 446, 574
LweI	GCATC	3 cut(s)	43, 454, 508
MaeI	CTAG	5 cut(s)	41, 225, 333, 429, 616
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	292, 544, 556
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	7 cut(s)	29, 125, 188, 191, 218, 377, 413
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	242, 343
MluCI	AATT	3 cut(s)	53, 468, 596
MlyI	GAGTC	2 cut(s)	60, 377
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	22, 85, 242, 283, 285, 543
MseI	TTAA	2 cut(s)	252, 471
MspI	CCGG	1 cut(s)	561
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	501
NlaIV	GGNNCC	1 cut(s)	355
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	2 cut(s)	292, 544
NspI	RCATGY	1 cut(s)	501
PaeR7I	CTCGAG	1 cut(s)	233
PciI	ACATGT	1 cut(s)	497
PfeI	GAWTC	3 cut(s)	149, 425, 527
PleI	GAGTC	2 cut(s)	60, 376
PpsI	GAGTC	2 cut(s)	60, 376
PscI	ACATGT	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	355
PspXI	VCTCGAGB	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	3 cut(s)	171, 410, 496
RsaNI	GTAC	3 cut(s)	170, 409, 495
SaqAI	TTAA	2 cut(s)	252, 471
Sau3AI	GATC	1 cut(s)	268
SchI	GAGTC	2 cut(s)	60, 377
SduI	GDGCHC	2 cut(s)	242, 343
SetI	ASST	6 cut(s)	33, 85, 140, 194, 294, 588
SfaNI	GCATC	3 cut(s)	43, 454, 508
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	233, 522
SmoI	CTYRAG	2 cut(s)	233, 522
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	3 cut(s)	53, 468, 596
SsiI	CCGC	2 cut(s)	304, 357
SspMI	CTAG	5 cut(s)	41, 225, 333, 429, 616
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	219, 234
TasI	AATT	3 cut(s)	53, 468, 596
TatI	WGTACW	2 cut(s)	169, 408
TfiI	GAWTC	3 cut(s)	149, 425, 527
Tru1I	TTAA	2 cut(s)	252, 471
Tru9I	TTAA	2 cut(s)	252, 471
TscAI	CASTG	2 cut(s)	292, 465
TseFI	GTSAC	2 cut(s)	292, 544
Tsp45I	GTSAC	2 cut(s)	292, 544
TspDTI	ATGAA	5 cut(s)	17, 30, 426, 501, 600
TspRI	CASTG	2 cut(s)	292, 465
XagI	CCTNNNNNAGG	1 cut(s)	537
XapI	RAATTY	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	40
XceI	RCATGY	1 cut(s)	501
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	5 cut(s)	41, 225, 333, 429, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.