Rw0G010470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00451
OG0006409
Physical Location & Seq
Reverse (-)
8586 .. 10717
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010470.1

Sequence Viewer

Length: 1284 bp
ATGACGATGAACCAGGGAGACGCAAGATCTCTTTTTATAGTGGTGGATTTTCCTTATAAAGCTCCATACTTTAGTAGTGTATTTGAAATTAAATTGGGTGAGATGCTTCGAGGACAAACAAAGGAAGAAGAAGCATTTGCATGTGTAGGACAGTTGAGTCAAACCAAGTGGCGCCAACCCATTTCATGGATGTTTTCTTCTTTGGCTACTGCCACTTCTTGCAGTTCTACCGACCTGTGTCTATTGCCAGATGGTAGTCCTGAAGATTTTAAGATCGATGTTCCATTGCACGGATATATCTTCAACATCAGGACCAAAGAGGTGCGAAAAATGAAGCCACCCAAGGCCTCCAAATGCTTAGGACATGTTGTATCTTTGAAAGGGGACATTTATTTTATTACAGATCCATACTGGTTAACTGGTGCACCAGACCCGTCTTTTGAGCGATATCTTCCTGACAAAGATTCTTGGGAAACTCTGACACATTTTCCCCGCATTGAGGGCATGAGTTGCGATGGTCAGATGGTGGCTATCGCCGTTTGTGATGAATTCATTGTGTTTAACATAGATGCCTCTATCACAGGTTGTCAAATGTGGGCGTATGATGTAGGTAGAAACAAATGGTATTTAGTCAAAGTTGACAACTATGGGTGCTATGGTATACGAGGGGTGGCTGTGGTTCTAGAAAAGACTATCTATGCCTTAACACACATGTCGTTTGACACAGTTCTGGCTTTATCTATTACAAGGGAACAAATTGATGGAGATCTTGTATTTACATGTTCTCTACACTCGGTCATTGAGGTGCCGTACATGGAGCTATTTCCATTGGGTGAGGCAGGCCCGAGAAGCAGGTATTTGGTTTATTTGGGTCAGCAGGAGTTTTGTCTTGTCCAGAGTGGTCTCCTCCCTGGTTATAATGATCGTCAACCCATAAAATTCAGCATTATAAAGCTTGTGGGAAAAAACTCAATGAATATAACTGATGAAATAGTCTACGAGGTGCATCTTCTGGATTTTGAGCAATTTCGAGTTAGACACTGCTTCTCGCCGCCTGAGTGCGAGGATTTTGTCTTAAAAGAAGAAGACAAAGTGTTTGTGAGGATATTGTGTCAAAACAAGAAGACAAGAGTGATACTGACTTCACCTTCAACCCAATCTGAAGTTGTCAAACCAGTCCAAGAAGAAGAGGTTGCGACCCTGCCAATACAAGGAGAAACAATAGTCGATACCAGTTCCCTTGAGAGGCTTCAACTATCACAATCGGGGATTTTCAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

48.46

Weight (kDa)

5.15

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 57, 918, 950
AasI GACNNNNNNGTC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 843
AccB1I GGYRCC 2 cut(s) 171, 805
AccB7I CCANNNNNTGG 1 cut(s) 186
AccI GTMKAC 2 cut(s) 661, 996
AciI CCGC 2 cut(s) 493, 1052
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 2 cut(s) 548, 938
AcuI CTGAAG 2 cut(s) 282, 1182
AcyI GRCGYC 1 cut(s) 172
AfaI GTAC 1 cut(s) 812
AfiI CCNNNNNNNGG 5 cut(s) 186, 290, 499, 1211, 1245
AflIII ACRYGT 3 cut(s) 364, 711, 779
AgsI TTSAA 6 cut(s) 86, 304, 379, 1152, 1253, 1276
AjnI CCWGG 2 cut(s) 12, 910
AluBI AGCT 3 cut(s) 62, 820, 955
AluI AGCT 3 cut(s) 62, 820, 955
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 2 cut(s) 12, 908
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 844
AoxI GGCC 2 cut(s) 345, 841
ApaLI GTGCAC 1 cut(s) 423
ApoI RAATTY 2 cut(s) 548, 938
ArsI GACNNNNNNTTYG 4 cut(s) 422, 454, 1079, 1111
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 312, 842
AsuHPI GGTGA 3 cut(s) 110, 845, 1137
AvaI CYCGRG 1 cut(s) 844
AvaII GGWCC 1 cut(s) 312
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 2 cut(s) 171, 805
BbsI GAAGAC 2 cut(s) 1092, 1130
Bbv12I GWGCWC 1 cut(s) 427
BccI CCATC 4 cut(s) 245, 509, 517, 755
BceAI ACGGC 2 cut(s) 521, 793
BciT130I CCWGG 2 cut(s) 14, 912
BcoDI GTCTC 2 cut(s) 12, 908
BfaI CTAG 1 cut(s) 683
BfoI RGCGCY 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 843
BglII AGATCT 2 cut(s) 26, 766
BisI GCNGC 1 cut(s) 1052
BlsI GCNGC 1 cut(s) 1053
Bme1390I CCNGG 2 cut(s) 14, 912
Bme18I GGWCC 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 844
BmgT120I GGNCC 2 cut(s) 312, 842
BmiI GGNNCC 2 cut(s) 173, 807
BmrFI CCNGG 2 cut(s) 14, 912
BmsI GCATC 3 cut(s) 93, 559, 1015
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 2 cut(s) 1092, 1130
Bpu10I CCTNAGC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 1262
Bsa29I ATCGAT 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 765
BsaHI GRCGYC 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 3 cut(s) 13, 342, 910
BsaXI ACNNNNNCTCC 2 cut(s) 756, 786
Bsc4I CCNNNNNNNGG 5 cut(s) 186, 290, 499, 1211, 1245
Bse1I ACTGG 4 cut(s) 416, 424, 1175, 1233
Bse3DI GCAATG 1 cut(s) 284
Bse8I GATNNNNATC 1 cut(s) 765
BseBI CCWGG 2 cut(s) 14, 912
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 3 cut(s) 13, 342, 910
BseGI GGATG 1 cut(s) 195
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 5 cut(s) 186, 290, 499, 1211, 1245
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 1047
BseNI ACTGG 4 cut(s) 416, 424, 1175, 1233
BseRI GAGGAG 1 cut(s) 896
BseSI GKGCMC 1 cut(s) 427
BshFI GGCC 2 cut(s) 347, 843
BshNI GGYRCC 2 cut(s) 171, 805
BshVI ATCGAT 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 844
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 5 cut(s) 186, 290, 499, 1211, 1245
BsmAI GTCTC 2 cut(s) 12, 908
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 2 cut(s) 347, 843
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 5 cut(s) 26, 273, 403, 766, 922
BspACI CCGC 2 cut(s) 493, 1052
BspANI GGCC 2 cut(s) 347, 843
BspCNI CTCAG 1 cut(s) 1048
BspDI ATCGAT 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 173, 807
BspMI ACCTGC 1 cut(s) 843
BspPI GGATC 1 cut(s) 398
BspT107I GGYRCC 2 cut(s) 171, 805
BspTNI GGTCTC 1 cut(s) 908
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 4 cut(s) 416, 424, 1175, 1233
BssECI CCNNGG 3 cut(s) 13, 342, 910
BssMI GATC 5 cut(s) 26, 273, 403, 766, 922
BssNAI GTATAC 1 cut(s) 662
BssNI GRCGYC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 342
Bst1107I GTATAC 1 cut(s) 662
Bst2UI CCWGG 2 cut(s) 14, 912
Bst4CI ACNGT 2 cut(s) 153, 727
Bst6I CTCTTC 1 cut(s) 1182
BstACI GRCGYC 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 841
BstDEI CTNAG 2 cut(s) 358, 1056
BstF5I GGATG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 5 cut(s) 29, 276, 406, 769, 925
BstMAI GTCTC 2 cut(s) 12, 908
BstMBI GATC 5 cut(s) 26, 273, 403, 766, 922
BstMWI GCNNNNNNNGC 3 cut(s) 501, 510, 849
BstNI CCWGG 2 cut(s) 14, 912
BstNSI RCATGY 4 cut(s) 144, 368, 715, 783
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 12, 910
BstSLI GKGCMC 1 cut(s) 427
BstV2I GAAGAC 2 cut(s) 1092, 1130
BstX2I RGATCY 3 cut(s) 26, 403, 766
BstYI RGATCY 3 cut(s) 26, 403, 766
BstZ17I GTATAC 1 cut(s) 662
Bsu15I ATCGAT 1 cut(s) 276
BsuRI GGCC 2 cut(s) 347, 843
BsuTUI ATCGAT 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 528
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 1039
BtsIMutI CAGTG 1 cut(s) 1039
BveI ACCTGC 1 cut(s) 843
Cac8I GCNNGC 1 cut(s) 841
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 2 cut(s) 312, 842
ClaI ATCGAT 1 cut(s) 276
CseI GACGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 811
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviAII CATG 7 cut(s) 141, 186, 365, 505, 712, 780, 814
CviQI GTAC 1 cut(s) 811
DdeI CTNAG 2 cut(s) 358, 1056
DinI GGCGCC 1 cut(s) 173
DpnI GATC 5 cut(s) 28, 275, 405, 768, 924
DpnII GATC 5 cut(s) 26, 273, 403, 766, 922
DrdI GACNNNNNNGTC 1 cut(s) 156
DseDI GACNNNNNNGTC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 1182
EarI CTCTTC 1 cut(s) 1182
Eco130I CCWWGG 1 cut(s) 342
Eco147I AGGCCT 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 908
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 312
Eco57I CTGAAG 2 cut(s) 282, 1182
Eco88I CYCGRG 1 cut(s) 844
EcoRI GAATTC 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 12, 910
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 342
EgeI GGCGCC 1 cut(s) 173
EheI GGCGCC 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 7 cut(s) 144, 189, 368, 508, 715, 783, 817
FaqI GGGAC 1 cut(s) 398
FatI CATG 7 cut(s) 140, 185, 364, 504, 711, 779, 813
FauI CCCGC 1 cut(s) 500
FblI GTMKAC 2 cut(s) 661, 996
Fnu4HI GCNGC 1 cut(s) 1052
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 1052
FspBI CTAG 1 cut(s) 683
GlaI GCGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 1052
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 2 cut(s) 347, 843
HgaI GACGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 7 cut(s) 144, 189, 368, 508, 715, 783, 817
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 3 cut(s) 417, 640, 929
HindII GTYRAC 3 cut(s) 417, 640, 929
HindIII AAGCTT 1 cut(s) 953
HinfI GANTC 2 cut(s) 157, 464
HpaI GTTAAC 1 cut(s) 417
HphI GGTGA 3 cut(s) 110, 845, 1137
Hpy166II GTNNAC 6 cut(s) 417, 425, 640, 662, 929, 997
Hpy188I TCNGA 3 cut(s) 480, 522, 1162
Hpy188III TCNNGA 6 cut(s) 260, 310, 455, 683, 895, 1013
Hpy8I GTNNAC 6 cut(s) 417, 425, 640, 662, 929, 997
HpyAV CCTTC 1 cut(s) 1158
HpyCH4III ACNGT 2 cut(s) 153, 727
HpyCH4V TGCA 5 cut(s) 140, 222, 289, 425, 1006
HpyF10VI GCNNNNNNNGC 3 cut(s) 501, 510, 849
HpyF3I CTNAG 2 cut(s) 358, 1056
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 7 cut(s) 144, 189, 368, 508, 715, 783, 817
HspAI GCGC 1 cut(s) 172
KasI GGCGCC 1 cut(s) 171
KspAI GTTAAC 1 cut(s) 417
Kzo9I GATC 5 cut(s) 26, 273, 403, 766, 922
LmnI GCTCC 2 cut(s) 67, 817
LweI GCATC 3 cut(s) 93, 559, 1015
MaeI CTAG 1 cut(s) 683
MalI GATC 5 cut(s) 28, 275, 405, 768, 924
MboI GATC 5 cut(s) 26, 273, 403, 766, 922
MflI RGATCY 3 cut(s) 26, 403, 766
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 6 cut(s) 87, 92, 548, 756, 938, 1025
Mly113I GGCGCC 1 cut(s) 172
MlyI GAGTC 1 cut(s) 166
MseI TTAA 6 cut(s) 90, 270, 416, 561, 704, 1076
MslI CAYNNNNRTG 2 cut(s) 139, 803
MspR9I CCNGG 2 cut(s) 14, 912
MvaI CCWGG 2 cut(s) 14, 912
MwoI GCNNNNNNNGC 3 cut(s) 501, 510, 849
NarI GGCGCC 1 cut(s) 172
NdeII GATC 5 cut(s) 26, 273, 403, 766, 922
NlaIII CATG 7 cut(s) 144, 189, 368, 508, 715, 783, 817
NlaIV GGNNCC 2 cut(s) 173, 807
NspI RCATGY 4 cut(s) 144, 368, 715, 783
PceI AGGCCT 1 cut(s) 347
PciI ACATGT 3 cut(s) 364, 711, 779
PfeI GAWTC 1 cut(s) 464
PflMI CCANNNNNTGG 1 cut(s) 186
PkrI GCNGC 1 cut(s) 1053
PleI GAGTC 1 cut(s) 165
PluTI GGCGCC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 165
PscI ACATGT 3 cut(s) 364, 711, 779
PshAI GACNNNNGTC 1 cut(s) 237
PsiI TTATAA 3 cut(s) 57, 918, 950
Psp6I CCWGG 2 cut(s) 12, 910
PspGI CCWGG 2 cut(s) 12, 910
PspN4I GGNNCC 2 cut(s) 173, 807
PspPI GGNCC 2 cut(s) 312, 842
PsuI RGATCY 3 cut(s) 26, 403, 766
RsaI GTAC 1 cut(s) 812
RsaNI GTAC 1 cut(s) 811
RseI CAYNNNNRTG 2 cut(s) 139, 803
SaqAI TTAA 6 cut(s) 90, 270, 416, 561, 704, 1076
SatI GCNGC 1 cut(s) 1052
Sau3AI GATC 5 cut(s) 26, 273, 403, 766, 922
Sau96I GGNCC 2 cut(s) 312, 842
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 14, 912
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 3 cut(s) 93, 559, 1015
SfoI GGCGCC 1 cut(s) 173
SinI GGWCC 1 cut(s) 312
SmiMI CAYNNNNRTG 2 cut(s) 139, 803
SmlI CTYRAG 1 cut(s) 1241
SmoI CTYRAG 1 cut(s) 1241
Sse9I AATT 6 cut(s) 87, 92, 548, 756, 938, 1025
SseBI AGGCCT 1 cut(s) 347
SsiI CCGC 2 cut(s) 493, 1052
SspDI GGCGCC 1 cut(s) 171
SspMI CTAG 1 cut(s) 683
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 2 cut(s) 12, 910
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 153, 727
TaqI TCGA 4 cut(s) 109, 276, 1030, 1227
TaqII GACCGA 1 cut(s) 784
TasI AATT 6 cut(s) 87, 92, 548, 756, 938, 1025
TauI GCSGC 1 cut(s) 1054
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 6 cut(s) 90, 270, 416, 561, 704, 1076
Tru9I TTAA 6 cut(s) 90, 270, 416, 561, 704, 1076
TscAI CASTG 1 cut(s) 1046
TspDTI ATGAA 7 cut(s) 23, 174, 347, 541, 561, 989, 1002
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 1046
Van91I CCANNNNNTGG 1 cut(s) 186
VneI GTGCAC 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 312
XapI RAATTY 2 cut(s) 548, 938
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 4 cut(s) 144, 368, 715, 783
XmiI GTMKAC 2 cut(s) 661, 996
XspI CTAG 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.