Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

37591923 .. 37592941

Gene Structure 1019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCCCCAGAAGATATGTACAAGTTTTATCAAAGATTCTAGTGCTTCATATAATGGCAATATGATTACACTGGATGTAATTAAATCCATAAATGATGAATGTCGTACATGTGAAATAGAGAGTGTAGATGCTCAAGAATCTCCTCAGCAAGGGGTGACTGTATTAGTAACCGGATACTTGGTTGGAAAAGACAACGTGGGAAGGAAATTTGCCCAAACATTCATCCTAGCTCCACTGGAAAAGGGGTACTTCATCTTCAAGGATATGTTTAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

92

Amino Acids

10.34

Weight (kDa)

5.27

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	27 - 92	4.5e-16	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	3 cut(s)	19, 106, 248
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BbvCI	CCTCAGC	1 cut(s)	144
BciVI	GTATCC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	39, 227
BfuI	GTATCC	1 cut(s)	167
BmsI	GCATC	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	75, 240
BseGI	GGATG	2 cut(s)	79, 222
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	2 cut(s)	75, 240
BseRI	GAGGAG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	75, 240
Bst4CI	ACNGT	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	144
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	79, 222
BstNSI	RCATGY	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	79, 222
BtsIMutI	CAGTG	2 cut(s)	68, 233
Csp6I	GTAC	3 cut(s)	18, 105, 247
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	1 cut(s)	230
CviKI_1	RGCY	1 cut(s)	230
CviQI	GTAC	3 cut(s)	18, 105, 247
DdeI	CTNAG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	111
FaiI	YATR	7 cut(s)	16, 49, 51, 62, 89, 109, 266
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	1 cut(s)	107
FokI	GGATG	2 cut(s)	86, 209
FspBI	CTAG	2 cut(s)	39, 227
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	1 cut(s)	111
HinfI	GANTC	2 cut(s)	35, 137
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	4 cut(s)	20, 56, 184, 221
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	39, 227
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	154, 166
MboII	GAAGA	2 cut(s)	22, 247
MluCI	AATT	2 cut(s)	78, 206
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	1 cut(s)	153
MseI	TTAA	1 cut(s)	81
MspI	CCGG	1 cut(s)	171
NlaIII	CATG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	111
PciI	ACATGT	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	35, 137
PscI	ACATGT	1 cut(s)	107
RsaI	GTAC	3 cut(s)	19, 106, 248
RsaNI	GTAC	3 cut(s)	18, 105, 247
SaqAI	TTAA	1 cut(s)	81
SetI	ASST	2 cut(s)	198, 232
SfaNI	GCATC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	78, 206
SspMI	CTAG	2 cut(s)	39, 227
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	198
TasI	AATT	2 cut(s)	78, 206
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	35, 137
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	75, 240
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	36, 111, 211, 241
TspRI	CASTG	2 cut(s)	75, 240
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	111
XspI	CTAG	2 cut(s)	39, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.