Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006409

Physical Location & Seq

Genomic Coordinates Reverse (-)

35860147 .. 35862308

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTCTTGCAAGAGTTAGATAGTTCTAGCCGTGCCCAACTTGTCGGCACCGCCTTTGTGGAGTCGTATTACCATTTTCTTCGCCACGCCCCAGAAGATATGTACAAGTTTTATCAAGATTCTAGTGCTTCATATAATGGCAATATGATTACACTGAATGTAATAACCGGATACTTGGTTGGAAAAGACAACGTGGGAAGGAAATTTGCCCAAACATTCATCCTAGCTCCACAGGAAAAGGGGTACTTCATCTTCAAGGATATGTTTAGGTATATTAAGGACAATGAATCATCACAAACAAACATCATTGATGAACAAGATTTTGAACAAGGATCAGTTATTCAATCAAGTCAGAGTGAAGATCTTGCGGATTCAACCCCGGAAGTCCAGGAGGATGCTTTAAAGAAATCATATGCATCAGTGGTTGCAGAAAGTAGTGTCGCATCCAGTCCTGTTCATGCTACCCAAGTGAGGAGGACAATATCTGTAATCACTGGCCACCCATCCCTTGGTTACGCAGATCCTTCTCTTGTACCAGAGGCTTCAGCTCCTGGTCACTCCATATTTGTAAGCAATTTGCCGTATGATGCCACTGTTGGACAACTTGAGAAGGAATTCAAGAAATTTGGGTCTAGCTATCAAGTGGGACGGGATCCAATTTTGACTTCCATGCAACATGCAATTGAGGCTTCAACTATCAGAATCGGGGATTTTCAAGCAGTGATTGAGGAAGAGAAAACCCCCCACCCGAGCTGGTTCTGGTCTATAGAATTGGCAATGGGAGAAGATGGAGGTACCACCTGCTGTAGCTTTGGTAAGAATAAATTCAGGAACCATGGGGAGCTTTCTCGATCCAAGTCTTCCGGTGGACACAATGGAGGGGGTTATCAGCGCCCAAGGGGCAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

303

Amino Acids

33.44

Weight (kDa)

5.5

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	54 - 91	1e-08	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11990
rosa_chinensis	RchiOBHm_Chr6g0275711 RchiOBHm_Chr6g0275721
rosa_laevigata	RLG00000013443
rosa_multiflora	Rmu_sc0002011.1_g000026
rosa_roxburghii	Rroxscaffold_7G00191650 Rroxscaffold_7G00192990 Rroxscaffold_7G00193080
rosa_rugosa	Rorug06G0095000 Rorug06G0096000 Rorug06G0470100
rosa_samantha	Rh6AG207700 Rh6AG207800 Rh6AG207900 Rh6BG210400 Rh6BG210500 Rh6CG213800 Rh6CG214200 Rh6DG203500 Rh6DG203600 Rh6DG203700 Rh7BG074900 Rh7CG075000
rosa_wichuraiana	Rw0G010470 Rw6G017980 Rw6G018000 Rw6G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	809
Acc36I	ACCTGC	1 cut(s)	809
Acc65I	GGTACC	1 cut(s)	794
AccB1I	GGYRCC	2 cut(s)	47, 794
AccB7I	CCANNNNNTGG	1 cut(s)	509
AciI	CCGC	2 cut(s)	51, 368
AclWI	GGATC	5 cut(s)	340, 515, 647, 660, 846
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	4 cut(s)	203, 614, 623, 824
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	4 cut(s)	104, 245, 534, 796
AfiI	CCNNNNNNNGG	2 cut(s)	471, 509
AgsI	TTSAA	7 cut(s)	256, 326, 344, 375, 619, 693, 716
AjnI	CCWGG	2 cut(s)	387, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	649, 681
AluBI	AGCT	6 cut(s)	227, 548, 636, 753, 810, 844
AluI	AGCT	6 cut(s)	227, 548, 636, 753, 810, 844
AlwI	GGATC	5 cut(s)	340, 515, 647, 660, 846
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	748
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	1 cut(s)	903
ApoI	RAATTY	4 cut(s)	203, 614, 623, 824
Asp700I	GAANNNNTTC	2 cut(s)	614, 824
Asp718I	GGTACC	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	894
AsuC2I	CCSGG	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	748
BaeGI	GKGCMC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	652
BanI	GGYRCC	2 cut(s)	47, 794
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	1 cut(s)	852
BccI	CCATC	2 cut(s)	511, 782
BceAI	ACGGC	2 cut(s)	15, 565
BciT130I	CCWGG	2 cut(s)	389, 552
BciVI	GTATCC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	380
BfaI	CTAG	4 cut(s)	27, 123, 224, 633
BfmI	CTRYAG	2 cut(s)	765, 805
BfoI	RGCGCY	1 cut(s)	895
BfuAI	ACCTGC	1 cut(s)	809
BfuI	GTATCC	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	900
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	1 cut(s)	904
BlsI	GCNGC	1 cut(s)	905
Bme1390I	CCNGG	3 cut(s)	380, 389, 552
BmeT110I	CYCGRG	1 cut(s)	748
BmiI	GGNNCC	4 cut(s)	49, 654, 796, 833
BmrFI	CCNGG	3 cut(s)	380, 389, 552
BmsI	GCATC	4 cut(s)	385, 425, 452, 577
BpiI	GAAGAC	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	380
BsaJI	CCNNGG	4 cut(s)	378, 508, 835, 896
BsaWI	WCCGGW	2 cut(s)	167, 863
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 509
Bse1I	ACTGG	2 cut(s)	447, 499
Bse3DI	GCAATG	1 cut(s)	783
BseBI	CCWGG	2 cut(s)	389, 552
BseDI	CCNNGG	4 cut(s)	378, 508, 835, 896
BseGI	GGATG	4 cut(s)	219, 400, 443, 503
BseLI	CCNNNNNNNGG	2 cut(s)	471, 509
BseMI	GCAATG	1 cut(s)	783
BseNI	ACTGG	2 cut(s)	447, 499
BseRI	GAGGAG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	37
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	2 cut(s)	47, 794
BsiHKCI	CYCGRG	1 cut(s)	748
BsiSI	CCGG	3 cut(s)	168, 380, 864
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	2 cut(s)	471, 509
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	1 cut(s)	498
BsoBI	CYCGRG	1 cut(s)	748
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	5 cut(s)	332, 361, 520, 652, 851
Bsp19I	CCATGG	1 cut(s)	835
BspACI	CCGC	2 cut(s)	51, 368
BspANI	GGCC	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	49, 654, 796, 833
BspMI	ACCTGC	1 cut(s)	809
BspPI	GGATC	5 cut(s)	340, 515, 647, 660, 846
BspT107I	GGYRCC	2 cut(s)	47, 794
BsrDI	GCAATG	1 cut(s)	783
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	447, 499
BssECI	CCNNGG	4 cut(s)	378, 508, 835, 896
BssMI	GATC	5 cut(s)	332, 361, 520, 652, 851
BssT1I	CCWWGG	3 cut(s)	508, 835, 896
Bst2UI	CCWGG	2 cut(s)	389, 552
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	726
BstAUI	TGTACA	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	835
BstF5I	GGATG	4 cut(s)	219, 400, 443, 503
BstH2I	RGCGCY	1 cut(s)	895
BstHHI	GCGC	1 cut(s)	894
BstKTI	GATC	5 cut(s)	335, 364, 523, 655, 854
BstMBI	GATC	5 cut(s)	332, 361, 520, 652, 851
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 900
BstNI	CCWGG	2 cut(s)	389, 552
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	3 cut(s)	378, 387, 550
BstSFI	CTRYAG	2 cut(s)	765, 805
BstSLI	GKGCMC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	852
BstX2I	RGATCY	3 cut(s)	361, 520, 652
BstYI	RGATCY	3 cut(s)	361, 520, 652
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	835
BtsCI	GGATG	4 cut(s)	219, 400, 443, 503
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	5 cut(s)	152, 426, 492, 591, 726
BveI	ACCTGC	1 cut(s)	809
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	894
Csp6I	GTAC	4 cut(s)	103, 244, 533, 795
CviAII	CATG	4 cut(s)	458, 670, 677, 836
CviQI	GTAC	4 cut(s)	103, 244, 533, 795
DpnI	GATC	5 cut(s)	334, 363, 522, 654, 853
DpnII	GATC	5 cut(s)	332, 361, 520, 652, 851
DraI	TTTAAA	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Eco130I	CCWWGG	3 cut(s)	508, 835, 896
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	387, 550
EcoT14I	CCWWGG	3 cut(s)	508, 835, 896
EcoT22I	ATGCAT	1 cut(s)	418
ErhI	CCWWGG	3 cut(s)	508, 835, 896
FaeI	CATG	4 cut(s)	461, 673, 680, 839
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	4 cut(s)	457, 669, 676, 835
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	904
FokI	GGATG	4 cut(s)	206, 407, 430, 490
Fsp4HI	GCNGC	1 cut(s)	904
FspBI	CTAG	4 cut(s)	27, 123, 224, 633
GlaI	GCGC	1 cut(s)	893
GluI	GCNGC	1 cut(s)	904
HaeII	RGCGCY	1 cut(s)	895
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	3 cut(s)	168, 380, 864
HhaI	GCGC	1 cut(s)	894
Hin1II	CATG	4 cut(s)	461, 673, 680, 839
Hin6I	GCGC	1 cut(s)	892
HinP1I	GCGC	1 cut(s)	892
HinfI	GANTC	5 cut(s)	62, 119, 287, 371, 702
HpaII	CCGG	3 cut(s)	168, 380, 864
Hpy166II	GTNNAC	1 cut(s)	869
Hpy188I	TCNGA	2 cut(s)	354, 701
Hpy188III	TCNNGA	4 cut(s)	116, 619, 829, 849
Hpy8I	GTNNAC	1 cut(s)	869
HpyAV	CCTTC	3 cut(s)	192, 534, 604
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	5 cut(s)	10, 416, 428, 673, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 900
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	461, 673, 680, 839
HspAI	GCGC	1 cut(s)	892
KpnI	GGTACC	1 cut(s)	798
Kzo9I	GATC	5 cut(s)	332, 361, 520, 652, 851
LmnI	GCTCC	3 cut(s)	232, 553, 841
LweI	GCATC	4 cut(s)	385, 425, 452, 577
MaeI	CTAG	4 cut(s)	27, 123, 224, 633
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	512, 554
MalI	GATC	5 cut(s)	334, 363, 522, 654, 853
MboI	GATC	5 cut(s)	332, 361, 520, 652, 851
MboII	GAAGA	7 cut(s)	71, 107, 244, 371, 743, 797, 852
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	3 cut(s)	361, 520, 652
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	8 cut(s)	203, 574, 614, 623, 657, 681, 770, 824
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	160, 577
MnlI	CCTC	8 cut(s)	385, 465, 468, 532, 679, 721, 785, 872
Mox20I	TGGCCA	1 cut(s)	498
Mph1103I	ATGCAT	1 cut(s)	418
MroXI	GAANNNNTTC	2 cut(s)	614, 824
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	2 cut(s)	276, 401
Msp20I	TGGCCA	1 cut(s)	498
MspI	CCGG	3 cut(s)	168, 380, 864
MspR9I	CCNGG	3 cut(s)	380, 389, 552
MunI	CAATTG	1 cut(s)	681
MvaI	CCWGG	2 cut(s)	389, 552
MwoI	GCNNNNNNNGC	2 cut(s)	686, 900
NciI	CCSGG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	835
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	5 cut(s)	332, 361, 520, 652, 851
NlaIII	CATG	4 cut(s)	461, 673, 680, 839
NlaIV	GGNNCC	4 cut(s)	49, 654, 796, 833
NmuCI	GTSAC	1 cut(s)	554
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	680
PaqCI	CACCTGC	1 cut(s)	809
PdmI	GAANNNNTTC	2 cut(s)	614, 824
PfeI	GAWTC	4 cut(s)	119, 287, 371, 702
PflMI	CCANNNNNTGG	1 cut(s)	509
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	1 cut(s)	905
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	387, 550
PspGI	CCWGG	2 cut(s)	387, 550
PspN4I	GGNNCC	4 cut(s)	49, 654, 796, 833
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	3 cut(s)	361, 520, 652
RsaI	GTAC	4 cut(s)	104, 245, 534, 796
RsaNI	GTAC	4 cut(s)	103, 244, 533, 795
SaqAI	TTAA	2 cut(s)	276, 401
SatI	GCNGC	1 cut(s)	904
Sau3AI	GATC	5 cut(s)	332, 361, 520, 652, 851
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	380, 389, 552
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	4 cut(s)	385, 425, 452, 577
SfcI	CTRYAG	2 cut(s)	765, 805
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	8 cut(s)	203, 574, 614, 623, 657, 681, 770, 824
SsiI	CCGC	2 cut(s)	51, 368
SspMI	CTAG	4 cut(s)	27, 123, 224, 633
StyD4I	CCNGG	3 cut(s)	378, 387, 550
StyI	CCWWGG	3 cut(s)	508, 835, 896
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	850
TasI	AATT	8 cut(s)	203, 574, 614, 623, 657, 681, 770, 824
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	4 cut(s)	119, 287, 371, 702
Tru1I	TTAA	2 cut(s)	276, 401
Tru9I	TTAA	2 cut(s)	276, 401
TscAI	CASTG	5 cut(s)	159, 426, 499, 598, 726
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	1 cut(s)	903
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	6 cut(s)	120, 208, 238, 300, 327, 446
TspRI	CASTG	5 cut(s)	159, 426, 499, 598, 726
Van91I	CCANNNNNTGG	1 cut(s)	509
XapI	RAATTY	4 cut(s)	203, 614, 623, 824
XceI	RCATGY	1 cut(s)	680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmnI	GAANNNNTTC	2 cut(s)	614, 824
XspI	CTAG	4 cut(s)	27, 123, 224, 633
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.