Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Reverse (-)

6887498 .. 6889900

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCCTGGGATTAGAACCCAAGTCTTGAATCAAGATATGTATTGTATGAAAGTGATGGCAAAGCAATCAAGAAAAGAAGAGGATACAAGTTTGAAGAGGAGAGTTCGAATTATGTACACTGATCCCTATGCTACTGATTCTTCCAGTGAAGATGATGAACAATGTAATGTTAATGAGTATCAATCTGTGCCCGGAAAAAAGGTCTTTGTTTCGGAGATTGTGGTTGGCGGCATGCAAGATGAATCATATGCCTATGGAGGTAGAATTGGTAATACCAAGAATTCTGATGGCAGTAACAAAAGTCAGAGATCCTCTTCTCTGTACAAGGGAGTTCGGCGTAGAAAATGGGGTAAATATGCTGCAGAGATTCGTGATCCCTTTCGAGGGGTACGTGAGTGGATTGGCACTTTCGATACTGCAGAGGAGGCTTCTGTTGCCTATCAAAATAGGAGGCTTCAGTTTGATAACATGAAGTTAGAGTTAAAGAGAAAGATTGATTATGAGGACTTGCATATATCAAACAAGGGATTTGAGAGTTCTCATTTAACAGATAAGAGCAATCATCAGTACAAGTGTCAAAGCTTTCATTTATCGGGGGACAGTCAAGATTCATCAGTAGCTGCTGCTCCTGCGAACGAGACCTTTACATATGAAGAGACCACAAGTTTGTTTTGTCATCCATCACCATCATCTGTGCTTGATCTGCCTCCTAGTAAGGCTGCACTTGGAGGCTCTGAGCAACCTCTTTCTGAAGAAGAGCTATCCAATTTAAAATTTCCTGAAGCGCCACTATCATCACCATCAAGTGCTGAAGAAGGCTATGTGCTGCCACTTACTGAAGAAGCGCTATCCATTTTGAACGTTCCTGAAGTGCCAACATGTTCAGCAGTTAGTGCTGAAGAAGACTTTCTTCAAGATAAGCTATCCAGTTTGAAATTTACTGAAGGGCTAATATTGTCACCAATAAGAACTGAAGATTTGGGATCTCTGAATTTGGGATATATGGACAGTGACATTATTGATGGTTTGGATCAGTTGTTTGTTAGTATGAGTGACATTGTTGATCCTCCTGTGTATTGTGATGGAAATGGTCAGAATATCCTTCCTCCTCGTAAGTTTCTTATGAGTGACTTAGCAGGGTTTTGCTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

385

Amino Acids

42.82

Weight (kDa)

4.76

Isoelectric Point (pI)

72.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 156	7.3e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	228
AclI	AACGTT	1 cut(s)	861
AclWI	GGATC	6 cut(s)	116, 303, 368, 991, 1038, 1058
AcsI	RAATTY	4 cut(s)	280, 773, 935, 991
AcuI	CTGAAG	9 cut(s)	440, 771, 801, 831, 858, 888, 918, 963, 993
AfaI	GTAC	4 cut(s)	116, 323, 390, 569
AfeI	AGCGCT	1 cut(s)	846
AfiI	CCNNNNNNNGG	2 cut(s)	383, 384
AflIII	ACRYGT	1 cut(s)	878
AgsI	TTSAA	5 cut(s)	28, 94, 859, 914, 934
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	4 cut(s)	582, 620, 760, 922
AluI	AGCT	4 cut(s)	582, 620, 760, 922
Alw26I	GTCTC	2 cut(s)	632, 650
AlwI	GGATC	6 cut(s)	116, 303, 368, 991, 1038, 1058
AlwNI	CAGNNNCTG	1 cut(s)	620
Aor51HI	AGCGCT	1 cut(s)	846
ApeKI	GCWGC	5 cut(s)	359, 620, 623, 719, 826
ApoI	RAATTY	4 cut(s)	280, 773, 935, 991
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
Asp700I	GAANNNNTTC	1 cut(s)	906
AspLEI	GCGC	2 cut(s)	787, 847
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	675, 789, 951
AsuII	TTCGAA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	192
BaeI	ACNNNNGTAYC	2 cut(s)	380, 413
BbsI	GAAGAC	1 cut(s)	909
BbvI	GCAGC	5 cut(s)	346, 607, 610, 706, 813
BccI	CCATC	7 cut(s)	49, 281, 688, 694, 808, 1016, 1076
BciT130I	CCWGG	1 cut(s)	6
BciVI	GTATCC	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	632, 650
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	2 cut(s)	360, 417
BfoI	RGCGCY	2 cut(s)	788, 848
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	6 cut(s)	229, 360, 621, 624, 720, 827
BlsI	GCNGC	6 cut(s)	230, 361, 622, 625, 721, 828
Bme1390I	CCNGG	2 cut(s)	6, 192
BmrFI	CCNGG	2 cut(s)	6, 192
BpiI	GAAGAC	1 cut(s)	909
Bpu14I	TTCGAA	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	392
BsaI	GGTCTC	2 cut(s)	632, 650
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 384
Bse1I	ACTGG	2 cut(s)	144, 927
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	2 cut(s)	383, 384
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	2 cut(s)	144, 927
BseRI	GAGGAG	3 cut(s)	112, 437, 1098
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	5 cut(s)	346, 607, 610, 706, 813
BseYI	CCCAGC	1 cut(s)	1146
BsgI	GTGCAG	1 cut(s)	705
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	383, 384
BsmAI	GTCTC	2 cut(s)	632, 650
BsmFI	GGGAC	1 cut(s)	611
Bso31I	GGTCTC	2 cut(s)	632, 650
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	2 cut(s)	114, 321
Bsp143I	GATC	7 cut(s)	121, 308, 373, 700, 983, 1030, 1063
BspACI	CCGC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	727
BspMAI	CTGCAG	2 cut(s)	364, 421
BspPI	GGATC	6 cut(s)	116, 303, 368, 991, 1038, 1058
BspQI	GCTCTTC	1 cut(s)	750
BspT104I	TTCGAA	1 cut(s)	106
BspTNI	GGTCTC	2 cut(s)	632, 650
BsrGI	TGTACA	2 cut(s)	114, 321
BsrI	ACTGG	2 cut(s)	144, 927
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	7 cut(s)	121, 308, 373, 700, 983, 1030, 1063
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	602, 1010
Bst6I	CTCTTC	5 cut(s)	72, 89, 319, 648, 750
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstAUI	TGTACA	2 cut(s)	114, 321
BstBAI	YACGTR	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	735, 1132
BstF5I	GGATG	1 cut(s)	676
BstH2I	RGCGCY	2 cut(s)	788, 848
BstHHI	GCGC	2 cut(s)	787, 847
BstKTI	GATC	7 cut(s)	124, 311, 376, 703, 986, 1033, 1066
BstMAI	GTCTC	2 cut(s)	632, 650
BstMBI	GATC	7 cut(s)	121, 308, 373, 700, 983, 1030, 1063
BstMWI	GCNNNNNNNGC	5 cut(s)	425, 434, 629, 703, 893
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	2 cut(s)	235, 882
BstSCI	CCNGG	2 cut(s)	4, 190
BstSFI	CTRYAG	2 cut(s)	360, 417
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	5 cut(s)	346, 607, 610, 706, 813
BstV2I	GAAGAC	1 cut(s)	909
BstX2I	RGATCY	2 cut(s)	308, 983
BstYI	RGATCY	2 cut(s)	308, 983
BsuI	GTATCC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	3 cut(s)	117, 151, 1015
Cac8I	GCNNGC	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	2 cut(s)	787, 847
Csp6I	GTAC	4 cut(s)	115, 322, 389, 568
CviAII	CATG	3 cut(s)	232, 469, 879
CviQI	GTAC	4 cut(s)	115, 322, 389, 568
DdeI	CTNAG	2 cut(s)	735, 1132
DpnI	GATC	7 cut(s)	123, 310, 375, 702, 985, 1032, 1065
DpnII	GATC	7 cut(s)	121, 308, 373, 700, 983, 1030, 1063
DraI	TTTAAA	1 cut(s)	771
Eam1104I	CTCTTC	5 cut(s)	72, 89, 319, 648, 750
EarI	CTCTTC	5 cut(s)	72, 89, 319, 648, 750
Eco31I	GGTCTC	2 cut(s)	632, 650
Eco47III	AGCGCT	1 cut(s)	846
Eco57I	CTGAAG	9 cut(s)	440, 771, 801, 831, 858, 888, 918, 963, 993
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	3 cut(s)	235, 472, 882
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	3 cut(s)	231, 468, 878
FauNDI	CATATG	2 cut(s)	247, 649
Fnu4HI	GCNGC	6 cut(s)	229, 360, 621, 624, 720, 827
FokI	GGATG	1 cut(s)	663
Fsp4HI	GCNGC	6 cut(s)	229, 360, 621, 624, 720, 827
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	2 cut(s)	786, 846
GluI	GCNGC	6 cut(s)	229, 360, 621, 624, 720, 827
GsaI	CCCAGC	1 cut(s)	1150
HaeII	RGCGCY	2 cut(s)	788, 848
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	2 cut(s)	787, 847
Hin1II	CATG	3 cut(s)	235, 472, 882
Hin6I	GCGC	2 cut(s)	785, 845
HinP1I	GCGC	2 cut(s)	785, 845
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	5 cut(s)	28, 137, 242, 367, 608
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	3 cut(s)	675, 789, 951
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	7 cut(s)	214, 286, 306, 736, 751, 990, 1095
Hpy188III	TCNNGA	8 cut(s)	25, 32, 69, 371, 605, 779, 866, 914
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	3 cut(s)	809, 938, 1112
HpyCH4III	ACNGT	2 cut(s)	602, 1010
HpyCH4IV	ACGT	2 cut(s)	391, 861
HpyCH4V	TGCA	5 cut(s)	235, 362, 419, 511, 722
HpyF10VI	GCNNNNNNNGC	5 cut(s)	425, 434, 629, 703, 893
HpyF3I	CTNAG	2 cut(s)	735, 1132
HpySE526I	ACGT	2 cut(s)	391, 861
Hsp92II	CATG	3 cut(s)	235, 472, 882
HspAI	GCGC	2 cut(s)	785, 845
Kzo9I	GATC	7 cut(s)	121, 308, 373, 700, 983, 1030, 1063
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	1 cut(s)	631
Lsp1109I	GCAGC	5 cut(s)	346, 607, 610, 706, 813
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	2 cut(s)	391, 861
MaeIII	GTNAC	5 cut(s)	293, 957, 1010, 1052, 1127
MalI	GATC	7 cut(s)	123, 310, 375, 702, 985, 1032, 1065
MboI	GATC	7 cut(s)	121, 308, 373, 700, 983, 1030, 1063
MflI	RGATCY	2 cut(s)	308, 983
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	7 cut(s)	108, 264, 280, 766, 773, 935, 991
MroXI	GAANNNNTTC	1 cut(s)	906
MseI	TTAA	4 cut(s)	171, 482, 545, 770
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	6, 192
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	5 cut(s)	425, 434, 629, 703, 893
NciI	CCSGG	1 cut(s)	192
NdeI	CATATG	2 cut(s)	247, 649
NdeII	GATC	7 cut(s)	121, 308, 373, 700, 983, 1030, 1063
NlaIII	CATG	3 cut(s)	235, 472, 882
NmuCI	GTSAC	4 cut(s)	957, 1010, 1052, 1127
NspI	RCATGY	2 cut(s)	235, 882
NspV	TTCGAA	1 cut(s)	106
PaeI	GCATGC	1 cut(s)	235
PciI	ACATGT	1 cut(s)	878
PciSI	GCTCTTC	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	5 cut(s)	28, 137, 242, 367, 608
PkrI	GCNGC	6 cut(s)	230, 361, 622, 625, 721, 828
Ppu21I	YACGTR	1 cut(s)	392
PscI	ACATGT	1 cut(s)	878
Psp1406I	AACGTT	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	1146
PspGI	CCWGG	1 cut(s)	4
PstI	CTGCAG	2 cut(s)	364, 421
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	2 cut(s)	308, 983
RsaI	GTAC	4 cut(s)	116, 323, 390, 569
RsaNI	GTAC	4 cut(s)	115, 322, 389, 568
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	4 cut(s)	171, 482, 545, 770
SatI	GCNGC	6 cut(s)	229, 360, 621, 624, 720, 827
Sau3AI	GATC	7 cut(s)	121, 308, 373, 700, 983, 1030, 1063
ScrFI	CCNGG	2 cut(s)	6, 192
SduI	GDGCHC	1 cut(s)	192
SfcI	CTRYAG	2 cut(s)	360, 417
SfuI	TTCGAA	1 cut(s)	106
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	7 cut(s)	108, 264, 280, 766, 773, 935, 991
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	954
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	2 cut(s)	4, 190
TaaI	ACNGT	2 cut(s)	602, 1010
TaiI	ACGT	2 cut(s)	394, 864
TaqI	TCGA	3 cut(s)	106, 382, 411
TasI	AATT	7 cut(s)	108, 264, 280, 766, 773, 935, 991
TatI	WGTACW	3 cut(s)	114, 321, 567
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	5 cut(s)	28, 137, 242, 367, 608
Tru1I	TTAA	4 cut(s)	171, 482, 545, 770
Tru9I	TTAA	4 cut(s)	171, 482, 545, 770
TscAI	CASTG	3 cut(s)	124, 151, 1015
TseFI	GTSAC	4 cut(s)	957, 1010, 1052, 1127
TseI	GCWGC	5 cut(s)	359, 620, 623, 719, 826
Tsp45I	GTSAC	4 cut(s)	957, 1010, 1052, 1127
TspDTI	ATGAA	7 cut(s)	62, 171, 255, 485, 575, 600, 666
TspRI	CASTG	3 cut(s)	124, 151, 1015
XapI	RAATTY	4 cut(s)	280, 773, 935, 991
XceI	RCATGY	2 cut(s)	235, 882
XmnI	GAANNNNTTC	1 cut(s)	906
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.