Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Forward (+)

17196057 .. 17198713

Gene Structure 2657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G220700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGTCGTCTCGATTTCATCTATTGACTGGAGCTCAGAAGAAGCTCTGGACCTCATATCATTGTCTCTCTTGCACACTCGTTTTGCTCTCCACCTTTTGCATGCAATACTGGTCTCACGGTCACACCCTCAAACAGAGTTCACCTCTCTTTTCCATGCCATTAAGATCAAAAAGTTTTCCTTTTGCATTGCCTTTGGGCTTTCGGAGTTTTGACTTGAAAAAAATGCCGGGCTTTAAAACTCTAGTCTTGAATCAACATGTGAAGTTGAACAAATTGAAGACAAAGCAACCAAACAAAGAAGAGAATACAAGTTCCGTGAAGAGAATTCGGATTATATACAATGATCCTGATGCCACCGATTCTTCAAGTGATGATGAGGAATATGATGGTAAGGAGGACCGACTTCTGCATGACAAGCGCTTTGTTTCCGAGATTTTGGTTGTAGATACAAAATATGAATCATCTGCAGATGTCTTATCCCATTGCAAGACCAACAGAGGGAAAATTGGTGTAAGTATGAACTTTTATGACTCTAAGAAAACTAAAAGATCTTCTTCCATGTATAAGGGAGTTCGTCGCAGAAAATGGGGAAGATATGCAGCTGAGATTCGAGATCCAATTCAACGGCGTCGAAAATGGCTTGGAACTTTTGCTACTGCAGAGGAGGCTGCCGCTGTGTATCAGAAAAAGAAGCTCGAATTTGATAGTATACAATCACTGGGAAAGACTCAGAGGGACTATCAAAACTTGCAGTTATCAGATAAGGATAAGGGTGCTTTTGAGAGTTTTCAATTAACTGAGAGGACCAAGCATGAGTTTCAAGGCATTCCTTTATCAGAGGAGAGTCAGGATTCATCGGGTGATGCTGCTATTGAAACTTTCTCAGCAGAAGAAGCCGAACGTGTGTTTTGTCATCCGTCACCATCATCCGTGCTTGAAATATCTGGTACAGCTTCACTCGGTATTGGACTCAAACAGGCGAAAGAAGAATCTAGCGTGGAAGTTTTTGGGGGAGAAGGCAGCGTGCAACCATGTTTTGAAGAAGAACTATCCATTTTAAAGTTTCCTGTACAGCCAATGTTGCCATTAGATATCAAACAGTTGGATTTGGGATGTGGTGAAAATTACGTGTTTTCCAGTTTGGATCAGTTCTTTGATGGTATGAGTGACATAGTTGATTATCCTGCGTTCAATGATGGAAATGGTGAGGTTATCTGTCTTCCCGCTCTCGACTCTGATTTTGGTCAGCAGGATTTTGCTTGGATTGATCAAAAACCTGAACATGGCATGCCCATGAAGTTTTGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

437

Amino Acids

49.39

Weight (kDa)

6.25

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1226
AccI	GTMKAC	1 cut(s)	709
AciI	CCGC	2 cut(s)	672, 1224
AclWI	GGATC	3 cut(s)	338, 608, 1152
AcsI	RAATTY	2 cut(s)	324, 698
AcyI	GRCGYC	1 cut(s)	628
AfaI	GTAC	2 cut(s)	949, 1071
AfeI	AGCGCT	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	498, 1283
AflIII	ACRYGT	3 cut(s)	256, 901, 1128
AluBI	AGCT	5 cut(s)	32, 43, 602, 694, 953
AluI	AGCT	5 cut(s)	32, 43, 602, 694, 953
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	3 cut(s)	12, 68, 117
AlwI	GGATC	3 cut(s)	338, 608, 1152
Aor51HI	AGCGCT	1 cut(s)	419
ApeKI	GCWGC	4 cut(s)	599, 668, 866, 1020
ApoI	RAATTY	2 cut(s)	324, 698
ArsI	GACNNNNNNTTYG	4 cut(s)	404, 436, 1223, 1255
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	3 cut(s)	48, 397, 804
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	5 cut(s)	132, 872, 912, 1130, 1217
AvaII	GGWCC	3 cut(s)	48, 397, 804
BanII	GRGCYC	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	284, 1211
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	4 cut(s)	611, 655, 853, 1032
BccI	CCATC	4 cut(s)	380, 931, 1151, 1190
BceAI	ACGGC	1 cut(s)	641
BclI	TGATCA	1 cut(s)	1267
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	12, 68, 117
BfaI	CTAG	2 cut(s)	242, 993
BfmI	CTRYAG	2 cut(s)	465, 657
BfoI	RGCGCY	1 cut(s)	421
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	5 cut(s)	600, 669, 672, 867, 1021
BlsI	GCNGC	5 cut(s)	601, 670, 673, 868, 1022
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	3 cut(s)	48, 397, 804
BmgT120I	GGNCC	3 cut(s)	48, 397, 804
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	2 cut(s)	340, 853
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	2 cut(s)	284, 1211
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpmI	CTGGAG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	1129
BsaHI	GRCGYC	1 cut(s)	628
BsaI	GGTCTC	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	498, 1283
Bse1I	ACTGG	4 cut(s)	31, 113, 723, 1137
Bse3DI	GCAATG	2 cut(s)	185, 481
BseGI	GGATG	3 cut(s)	913, 926, 1118
BseLI	CCNNNNNNNGG	2 cut(s)	498, 1283
BseMI	GCAATG	2 cut(s)	185, 481
BseMII	CTCAG	5 cut(s)	47, 594, 743, 789, 897
BseNI	ACTGG	4 cut(s)	31, 113, 723, 1137
BseRI	GAGGAG	2 cut(s)	677, 854
BseXI	GCAGC	4 cut(s)	611, 655, 853, 1032
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	2 cut(s)	498, 1283
BsmAI	GTCTC	3 cut(s)	12, 68, 117
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	825
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	1069
Bsp143I	GATC	6 cut(s)	164, 343, 548, 613, 1144, 1267
BspACI	CCGC	2 cut(s)	672, 1224
BspCNI	CTCAG	5 cut(s)	46, 595, 742, 790, 896
BspMAI	CTGCAG	2 cut(s)	469, 661
BspPI	GGATC	3 cut(s)	338, 608, 1152
BspTNI	GGTCTC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	1226
BsrDI	GCAATG	2 cut(s)	185, 481
BsrGI	TGTACA	1 cut(s)	1069
BsrI	ACTGG	4 cut(s)	31, 113, 723, 1137
BssMI	GATC	6 cut(s)	164, 343, 548, 613, 1144, 1267
BssNAI	GTATAC	1 cut(s)	710
BssNI	GRCGYC	1 cut(s)	628
Bst1107I	GTATAC	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	119, 1101
Bst6I	CTCTTC	2 cut(s)	294, 314
BstACI	GRCGYC	1 cut(s)	628
BstAUI	TGTACA	1 cut(s)	1069
BstBAI	YACGTR	1 cut(s)	1129
BstC8I	GCNNGC	3 cut(s)	101, 1025, 1289
BstDEI	CTNAG	6 cut(s)	33, 534, 603, 729, 798, 883
BstF5I	GGATG	3 cut(s)	913, 926, 1118
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	6 cut(s)	167, 346, 551, 616, 1147, 1270
BstMAI	GTCTC	3 cut(s)	12, 68, 117
BstMBI	GATC	6 cut(s)	164, 343, 548, 613, 1144, 1267
BstMWI	GCNNNNNNNGC	4 cut(s)	415, 665, 893, 1081
BstNSI	RCATGY	3 cut(s)	103, 260, 1291
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	2 cut(s)	465, 657
BstV1I	GCAGC	4 cut(s)	611, 655, 853, 1032
BstV2I	GAAGAC	2 cut(s)	284, 1211
BstX2I	RGATCY	2 cut(s)	548, 613
BstYI	RGATCY	2 cut(s)	548, 613
BstZ17I	GTATAC	1 cut(s)	710
BtsCI	GGATG	3 cut(s)	913, 926, 1118
BtsIMutI	CAGTG	1 cut(s)	716
Cac8I	GCNNGC	3 cut(s)	101, 1025, 1289
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	48, 397, 804
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	2 cut(s)	948, 1070
CviQI	GTAC	2 cut(s)	948, 1070
DdeI	CTNAG	6 cut(s)	33, 534, 603, 729, 798, 883
DpnI	GATC	6 cut(s)	166, 345, 550, 615, 1146, 1269
DpnII	GATC	6 cut(s)	164, 343, 548, 613, 1144, 1267
DraI	TTTAAA	2 cut(s)	235, 1059
Eam1104I	CTCTTC	2 cut(s)	294, 314
EarI	CTCTTC	2 cut(s)	294, 314
Ecl136II	GAGCTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	1093
Eco47I	GGWCC	3 cut(s)	48, 397, 804
Eco47III	AGCGCT	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	1093
EcoT38I	GRGCYC	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	12
FalI	AAGNNNNNCTT	4 cut(s)	163, 195, 538, 570
FaqI	GGGAC	1 cut(s)	749
FauI	CCCGC	1 cut(s)	1231
FbaI	TGATCA	1 cut(s)	1267
FblI	GTMKAC	1 cut(s)	709
Fnu4HI	GCNGC	5 cut(s)	600, 669, 672, 867, 1021
FokI	GGATG	3 cut(s)	900, 913, 1125
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	600, 669, 672, 867, 1021
FspBI	CTAG	2 cut(s)	242, 993
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	5 cut(s)	600, 669, 672, 867, 1021
GsuI	CTGGAG	1 cut(s)	48
HaeII	RGCGCY	1 cut(s)	421
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	1 cut(s)	420
Hin1I	GRCGYC	1 cut(s)	628
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	5 cut(s)	132, 872, 912, 1130, 1217
Hpy166II	GTNNAC	2 cut(s)	140, 710
Hpy188I	TCNGA	9 cut(s)	36, 204, 330, 430, 684, 732, 760, 838, 1237
Hpy188III	TCNNGA	7 cut(s)	9, 46, 247, 347, 611, 848, 1229
Hpy8I	GTNNAC	2 cut(s)	140, 710
Hpy99I	CGWCG	2 cut(s)	579, 633
HpyAV	CCTTC	1 cut(s)	1010
HpyCH4III	ACNGT	2 cut(s)	119, 1101
HpyCH4IV	ACGT	2 cut(s)	901, 1128
HpyF10VI	GCNNNNNNNGC	4 cut(s)	415, 665, 893, 1081
HpyF3I	CTNAG	6 cut(s)	33, 534, 603, 729, 798, 883
HpySE526I	ACGT	2 cut(s)	901, 1128
Hsp92I	GRCGYC	1 cut(s)	628
HspAI	GCGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	1267
Kzo9I	GATC	6 cut(s)	164, 343, 548, 613, 1144, 1267
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	4 cut(s)	611, 655, 853, 1032
LweI	GCATC	2 cut(s)	340, 853
MaeI	CTAG	2 cut(s)	242, 993
MaeII	ACGT	2 cut(s)	901, 1128
MaeIII	GTNAC	3 cut(s)	119, 918, 1166
MalI	GATC	6 cut(s)	166, 345, 550, 615, 1146, 1269
MbiI	CCGCTC	1 cut(s)	1226
MboI	GATC	6 cut(s)	164, 343, 548, 613, 1144, 1267
MflI	RGATCY	2 cut(s)	548, 613
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	7 cut(s)	272, 324, 504, 618, 698, 791, 1123
MlyI	GAGTC	5 cut(s)	524, 721, 853, 963, 1226
MmeI	TCCRAC	1 cut(s)	1083
MseI	TTAA	4 cut(s)	161, 234, 794, 1058
MslI	CAYNNNNRTG	1 cut(s)	1292
MspA1I	CMGCKG	2 cut(s)	602, 674
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	825
MwoI	GCNNNNNNNGC	4 cut(s)	415, 665, 893, 1081
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	6 cut(s)	164, 343, 548, 613, 1144, 1267
NmuCI	GTSAC	3 cut(s)	119, 918, 1166
NspI	RCATGY	3 cut(s)	103, 260, 1291
PaeI	GCATGC	2 cut(s)	103, 1291
PciI	ACATGT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	825
PfeI	GAWTC	6 cut(s)	250, 359, 458, 607, 851, 989
PkrI	GCNGC	5 cut(s)	601, 670, 673, 868, 1022
PleI	GAGTC	5 cut(s)	524, 721, 852, 963, 1226
PpsI	GAGTC	5 cut(s)	524, 721, 852, 963, 1226
Ppu21I	YACGTR	1 cut(s)	1129
PscI	ACATGT	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	34
PspPI	GGNCC	3 cut(s)	48, 397, 804
PsrI	GAACNNNNNNTAC	2 cut(s)	637, 669
PstI	CTGCAG	2 cut(s)	469, 661
PsuI	RGATCY	2 cut(s)	548, 613
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	2 cut(s)	949, 1071
RsaNI	GTAC	2 cut(s)	948, 1070
RseI	CAYNNNNRTG	1 cut(s)	1292
SacI	GAGCTC	1 cut(s)	34
SaqAI	TTAA	4 cut(s)	161, 234, 794, 1058
SatI	GCNGC	5 cut(s)	600, 669, 672, 867, 1021
Sau3AI	GATC	6 cut(s)	164, 343, 548, 613, 1144, 1267
Sau96I	GGNCC	3 cut(s)	48, 397, 804
SchI	GAGTC	5 cut(s)	524, 721, 853, 963, 1226
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	2 cut(s)	340, 853
SfcI	CTRYAG	2 cut(s)	465, 657
SinI	GGWCC	3 cut(s)	48, 397, 804
SmiMI	CAYNNNNRTG	1 cut(s)	1292
SphI	GCATGC	2 cut(s)	103, 1291
Sse9I	AATT	7 cut(s)	272, 324, 504, 618, 698, 791, 1123
SsiI	CCGC	2 cut(s)	672, 1224
SspMI	CTAG	2 cut(s)	242, 993
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	119, 1101
TaiI	ACGT	2 cut(s)	904, 1131
TaqI	TCGA	5 cut(s)	10, 610, 631, 696, 1230
TaqII	GACCGA	1 cut(s)	414
TasI	AATT	7 cut(s)	272, 324, 504, 618, 698, 791, 1123
TatI	WGTACW	1 cut(s)	1069
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	6 cut(s)	250, 359, 458, 607, 851, 989
Tru1I	TTAA	4 cut(s)	161, 234, 794, 1058
Tru9I	TTAA	4 cut(s)	161, 234, 794, 1058
TscAI	CASTG	1 cut(s)	723
TseFI	GTSAC	3 cut(s)	119, 918, 1166
TseI	GCWGC	4 cut(s)	599, 668, 866, 1020
Tsp45I	GTSAC	3 cut(s)	119, 918, 1166
TspDTI	ATGAA	5 cut(s)	5, 471, 533, 843, 1310
TspGWI	ACGGA	3 cut(s)	304, 906, 919
TspRI	CASTG	1 cut(s)	723
VpaK11BI	GGWCC	3 cut(s)	48, 397, 804
XapI	RAATTY	2 cut(s)	324, 698
XceI	RCATGY	3 cut(s)	103, 260, 1291
XmiI	GTMKAC	1 cut(s)	709
XspI	CTAG	2 cut(s)	242, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.