Rh7DG073000

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002102
Physical Location & Seq
Forward (+)
5663508 .. 5665952
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG073000.1

Sequence Viewer

Length: 1203 bp
ATGCCGGGGATTAGAACCCAAGTCTTGAATCAAGATGTGTGTTATAAGAAACTGATGGCAAAGCAACCAAGAAAAGAAGAGGATACAAGTTTCAAGAAGAAAGTTCGAATTATGTACACTGATCCCTATGCTACTGATTCTTCGAGTGAAGATGATGAGCAATGTAATGCTACTGAGTATCAATCTGTGCCCAGAAAGAAGGTATTTGTTTCGGAGATTGTGGTTGGTGGCATGCAAGATGAATCATGTGTGTCTGGAGGTAGAATTGGTAATACCAATAAATCTGATGGCAGTAAGAAAAATCATAGATCCTATTCTGTATATAAGGGAGTTCGGCGTAGAAAATGGGGTAAATATGCTGCAGAGATTCGTGATCCGTTTCGAGGGGTACGGGAGTGGATTGGCACTTTTGATACTGCAGAGGAGGCTTCTGTTGCTTATCAAAATAGGAGGCTTCTGTTTGATAACATGAAGTTAGAGTTAAAGAGAAAGACTGAATATAAGGACTTGCAATTATCAAATGAGGCGTTTAAAAGTTCTCATTTAACAGTTGAGAGCAATCATCAGTATGAGTGTCAAAGCTTTCATTTATTGAGGGAGAGTCGGGATTCATCAGTAGCTGCTGCTGCTAATGAAACCTTTTCATATGAAGAGACCGCAAGTTTGTTTTGTCATCCATCACCATCATCTGTGCTTGATATACCTCCTAGTAAAGCTGCACTTGGTATTCGACTCTTCAATGGGGAGGTTTTTCAGCCAGAAGGCTCTGTGCAACCGCTTTCCAAAGAAGAGCTATCCAATTTGAAATTTCCTGAAGTGCCAATATCATCAGCAATAAGTGCTGAAGAAGGCTACGTGCGACCACTTTCTGAAGAAGAGCTATCCGTTTTGAAATTTCCTGAAGTGCCAATATCATCAGCAATAATTGCTGAAGAAGGCTCTGTTCAACCGCTTTCTGAAGAAGAGCATTTCAATTTGAAATTTACTCAAGTGCCAATATTGTCACCAATAAGAACCGAAGTTTGGGGATTTATGAATTTGGGATTTGTAGACAATGACATATTTGATGGTTTGGATCAGTTGTTTGTTGGTAGGAGTGACATAGTTGATCTTCCTGTGCATCGTCATGGAAATGGTGAGAATATCAGTCTTCCTCCTAGTAAGTTTCTAATGAGTGACTTGGCAGGGTTTTACTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

400

Amino Acids

45.18

Weight (kDa)

5.34

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 106 - 148 8e-08 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AccI GTMKAC 1 cut(s) 1050
AciI CCGC 3 cut(s) 657, 776, 950
AclWI GGATC 4 cut(s) 116, 303, 368, 1083
AcsI RAATTY 4 cut(s) 806, 893, 980, 1036
AcuI CTGAAG 6 cut(s) 834, 864, 891, 921, 951, 978
AfaI GTAC 2 cut(s) 116, 390
AfiI CCNNNNNNNGG 2 cut(s) 383, 1023
AgsI TTSAA 8 cut(s) 28, 94, 739, 805, 892, 947, 973, 979
AjuI GAANNNNNNNTTGG 2 cut(s) 1006, 1038
AluBI AGCT 5 cut(s) 582, 620, 716, 793, 880
AluI AGCT 5 cut(s) 582, 620, 716, 793, 880
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 4 cut(s) 116, 303, 368, 1083
AlwNI CAGNNNCTG 1 cut(s) 620
ApeKI GCWGC 5 cut(s) 359, 620, 623, 626, 716
ApoI RAATTY 4 cut(s) 806, 893, 980, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 3 cut(s) 672, 996, 1148
AsuII TTCGAA 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 192
BaeI ACNNNNGTAYC 2 cut(s) 380, 413
BbsI GAAGAC 1 cut(s) 1142
BbvI GCAGC 5 cut(s) 346, 607, 610, 613, 703
BccI CCATC 5 cut(s) 49, 281, 685, 691, 1061
BciVI GTATCC 1 cut(s) 76
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 2 cut(s) 708, 1158
BfmI CTRYAG 2 cut(s) 360, 417
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 5 cut(s) 360, 621, 624, 627, 717
BlsI GCNGC 5 cut(s) 361, 622, 625, 628, 718
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 1 cut(s) 1129
BpiI GAAGAC 1 cut(s) 1142
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 972
BpuMI CCSGG 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 856
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 1023
Bse1I ACTGG 1 cut(s) 1199
Bse3DI GCAATG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 2 cut(s) 383, 1023
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 1199
BseRI GAGGAG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 5 cut(s) 346, 607, 610, 613, 703
BsgI GTGCAG 1 cut(s) 702
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 383, 1023
BsmAI GTCTC 1 cut(s) 647
Bso31I GGTCTC 1 cut(s) 647
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 5 cut(s) 121, 308, 373, 1075, 1108
BspACI CCGC 3 cut(s) 657, 776, 950
BspCNI CTCAG 1 cut(s) 166
BspMAI CTGCAG 2 cut(s) 364, 421
BspPI GGATC 4 cut(s) 116, 303, 368, 1083
BspQI GCTCTTC 3 cut(s) 783, 870, 957
BspT104I TTCGAA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 114
BsrI ACTGG 1 cut(s) 1199
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 5 cut(s) 121, 308, 373, 1075, 1108
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 6 cut(s) 72, 645, 740, 783, 870, 957
BstAPI GCANNNNNTGC 2 cut(s) 839, 926
BstAUI TGTACA 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 856
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 673
BstKTI GATC 5 cut(s) 124, 311, 376, 1078, 1111
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 5 cut(s) 121, 308, 373, 1075, 1108
BstMWI GCNNNNNNNGC 5 cut(s) 425, 434, 626, 839, 926
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 2 cut(s) 360, 417
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 5 cut(s) 346, 607, 610, 613, 703
BstV2I GAAGAC 1 cut(s) 1142
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuI GTATCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 673
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 620
Csp6I GTAC 2 cut(s) 115, 389
CviAII CATG 4 cut(s) 232, 246, 469, 1127
CviQI GTAC 2 cut(s) 115, 389
DdeI CTNAG 1 cut(s) 174
DpnI GATC 5 cut(s) 123, 310, 375, 1077, 1110
DpnII GATC 5 cut(s) 121, 308, 373, 1075, 1108
DraI TTTAAA 1 cut(s) 532
Eam1104I CTCTTC 6 cut(s) 72, 645, 740, 783, 870, 957
EarI CTCTTC 6 cut(s) 72, 645, 740, 783, 870, 957
Eco31I GGTCTC 1 cut(s) 647
Eco57I CTGAAG 6 cut(s) 834, 864, 891, 921, 951, 978
FaeI CATG 4 cut(s) 235, 249, 472, 1130
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FatI CATG 4 cut(s) 231, 245, 468, 1126
FauNDI CATATG 1 cut(s) 646
FblI GTMKAC 1 cut(s) 1050
Fnu4HI GCNGC 5 cut(s) 360, 621, 624, 627, 717
FokI GGATG 1 cut(s) 660
Fsp4HI GCNGC 5 cut(s) 360, 621, 624, 627, 717
FspBI CTAG 2 cut(s) 708, 1158
GluI GCNGC 5 cut(s) 360, 621, 624, 627, 717
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 1 cut(s) 5
Hin1II CATG 4 cut(s) 235, 249, 472, 1130
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 7 cut(s) 28, 137, 242, 367, 601, 608, 732
HpaII CCGG 1 cut(s) 5
HphI GGTGA 3 cut(s) 672, 996, 1148
Hpy166II GTNNAC 2 cut(s) 117, 1051
Hpy188I TCNGA 4 cut(s) 214, 286, 871, 958
Hpy188III TCNNGA 8 cut(s) 25, 32, 94, 255, 371, 605, 812, 899
Hpy8I GTNNAC 2 cut(s) 117, 1051
HpyAV CCTTC 4 cut(s) 193, 755, 842, 929
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 7 cut(s) 235, 362, 419, 511, 719, 772, 1120
HpyF10VI GCNNNNNNNGC 5 cut(s) 425, 434, 626, 839, 926
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 855
Hsp92II CATG 4 cut(s) 235, 249, 472, 1130
Kzo9I GATC 5 cut(s) 121, 308, 373, 1075, 1108
LguI GCTCTTC 3 cut(s) 783, 870, 957
LpnPI CCDG 9 cut(s) 18, 205, 240, 771, 825, 912, 1128, 1170, 1180
Lsp1109I GCAGC 5 cut(s) 346, 607, 610, 613, 703
LweI GCATC 1 cut(s) 1129
MaeI CTAG 2 cut(s) 708, 1158
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 3 cut(s) 1002, 1097, 1175
MalI GATC 5 cut(s) 123, 310, 375, 1077, 1110
MboI GATC 5 cut(s) 121, 308, 373, 1075, 1108
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 192
MlyI GAGTC 2 cut(s) 610, 726
MseI TTAA 3 cut(s) 482, 531, 545
MslI CAYNNNNRTG 3 cut(s) 567, 1125, 1131
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MwoI GCNNNNNNNGC 5 cut(s) 425, 434, 626, 839, 926
NciI CCSGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 646
NdeII GATC 5 cut(s) 121, 308, 373, 1075, 1108
NlaIII CATG 4 cut(s) 235, 249, 472, 1130
NmuCI GTSAC 3 cut(s) 1002, 1097, 1175
NspI RCATGY 1 cut(s) 235
NspV TTCGAA 1 cut(s) 106
PaeI GCATGC 1 cut(s) 235
PciSI GCTCTTC 3 cut(s) 783, 870, 957
PfeI GAWTC 5 cut(s) 28, 137, 242, 367, 608
PkrI GCNGC 5 cut(s) 361, 622, 625, 628, 718
PleI GAGTC 2 cut(s) 609, 726
PpsI GAGTC 2 cut(s) 609, 726
Ppu21I YACGTR 1 cut(s) 856
PsiI TTATAA 1 cut(s) 45
PstI CTGCAG 2 cut(s) 364, 421
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 2 cut(s) 116, 390
RsaNI GTAC 2 cut(s) 115, 389
RseI CAYNNNNRTG 3 cut(s) 567, 1125, 1131
SapI GCTCTTC 3 cut(s) 783, 870, 957
SaqAI TTAA 3 cut(s) 482, 531, 545
SatI GCNGC 5 cut(s) 360, 621, 624, 627, 717
Sau3AI GATC 5 cut(s) 121, 308, 373, 1075, 1108
SchI GAGTC 2 cut(s) 610, 726
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 1 cut(s) 1129
SfcI CTRYAG 2 cut(s) 360, 417
SfuI TTCGAA 1 cut(s) 106
SmiMI CAYNNNNRTG 3 cut(s) 567, 1125, 1131
SmlI CTYRAG 1 cut(s) 987
SmoI CTYRAG 1 cut(s) 987
SphI GCATGC 1 cut(s) 235
SsiI CCGC 3 cut(s) 657, 776, 950
SspI AATATT 1 cut(s) 999
SspMI CTAG 2 cut(s) 708, 1158
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 1 cut(s) 858
TaqI TCGA 4 cut(s) 106, 143, 382, 730
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 5 cut(s) 28, 137, 242, 367, 608
Tru1I TTAA 3 cut(s) 482, 531, 545
Tru9I TTAA 3 cut(s) 482, 531, 545
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 3 cut(s) 1002, 1097, 1175
TseI GCWGC 5 cut(s) 359, 620, 623, 626, 716
Tsp45I GTSAC 3 cut(s) 1002, 1097, 1175
TspDTI ATGAA 8 cut(s) 255, 485, 575, 600, 633, 648, 663, 1049
TspGWI ACGGA 2 cut(s) 366, 874
TspRI CASTG 1 cut(s) 124
XapI RAATTY 4 cut(s) 806, 893, 980, 1036
XceI RCATGY 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 1050
XspI CTAG 2 cut(s) 708, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.