Rh1BG254300

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002102
Physical Location & Seq
Reverse (-)
38418980 .. 38425481
6502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG254300.1

Sequence Viewer

Length: 960 bp
ATGAAACGGGAGAATTTGAAGATGAAGCAACCAAGCAAAGACCAGAATACAAGTTCCACCAAGAGAATTCGCATCATATATGATGATCCCTATGCCACTGATTGTTCGAGTGAAGATGATGAGGAATATAATATTAAGAAAAATAGATCAGTGCGTAATAAGCGCATTGTTTCAGAGATTTTGGTTGGGGGTACCCCATGTGAATCATCTGCAAAGACTTCATTCAATTGCAATACCTATGGCACCAAGTTTGGTACTAGTATGGATTTCGATGACAGTAAGGAAACTCGAAGATGTGCTGCCAAATATAAAGGAGTTCGGCGTAGAAAATGGGGAACGTATGCGGCAGAAATTCGAGATCCATTTCGAAAGACTAGATTATGGCTTGGCACTTATACTACTGCAGAGGAGGCTGCTATGGCTTATCAGAAAAAGAGGGTCGAGTTTGATAACATAAAGTTATTGCAAAAGACTAAGAGTAATCTTGAAAAGTTGCAATTATCAGATAAGGCCAAGGGAATGTGTGAGACCAAGCATAATTATCAAGGCAATCATTTATCAGAGAGTCGGGATTTATCAGCTGATGCTGCTATTGAAACTGTTTCATATGAAGACACCAAAAGTGTGTTTTCTCATCCATCACCTTCATCTGTGCTTGATATTTCTAGTACAGCTGCACAAAATATTGGACTCAGAAAGTCAGATGAAGAGCCCACTTTGGAGGTTTCTGGACGAGAAGGCCCTGTGCCACTAGATTCTGAAGAAGAGCAATACAATTTGAAGGCTCCTGAAAAGCCAACATTGTTACCACCCGTACATTTGAATATTGGGTTTGTGGATAATTACATGCTTGAGTGTTTGGATCGGTATTTTGATGGTATGACTGACATAGTTGTTCATCGTGCGTGTGATGATGTAAATGGTGAGGTTATCAATCTTCCCTCTCTTGACTTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

319

Amino Acids

36.17

Weight (kDa)

5.89

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 102 - 144 4.2e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 191
AccB1I GGYRCC 2 cut(s) 191, 242
AciI CCGC 1 cut(s) 344
AclWI GGATC 3 cut(s) 80, 353, 870
AcsI RAATTY 3 cut(s) 13, 66, 351
AcuI CTGAAG 1 cut(s) 780
AfaI GTAC 4 cut(s) 193, 256, 670, 816
AgsI TTSAA 6 cut(s) 19, 226, 488, 596, 781, 823
AhlI ACTAGT 1 cut(s) 257
AluBI AGCT 2 cut(s) 581, 674
AluI AGCT 2 cut(s) 581, 674
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 3 cut(s) 80, 353, 870
AoxI GGCC 2 cut(s) 510, 739
ApeKI GCWGC 4 cut(s) 299, 413, 587, 674
ApoI RAATTY 3 cut(s) 13, 66, 351
Asp718I GGTACC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 2 cut(s) 633, 935
AsuII TTCGAA 1 cut(s) 367
BanI GGYRCC 2 cut(s) 191, 242
BanII GRGCYC 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 618
BbvI GCAGC 4 cut(s) 286, 400, 574, 661
BccI CCATC 2 cut(s) 646, 869
BcoDI GTCTC 1 cut(s) 521
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 4 cut(s) 258, 375, 666, 752
BfmI CTRYAG 1 cut(s) 402
BisI GCNGC 5 cut(s) 300, 345, 414, 588, 675
BlsI GCNGC 5 cut(s) 301, 346, 415, 589, 676
BmgT120I GGNCC 1 cut(s) 740
BmiI GGNNCC 3 cut(s) 193, 244, 786
BmsI GCATC 2 cut(s) 81, 574
BpiI GAAGAC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 872
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 1 cut(s) 634
BseMII CTCAG 1 cut(s) 706
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 4 cut(s) 286, 400, 574, 661
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 2 cut(s) 512, 741
BshNI GGYRCC 2 cut(s) 191, 242
BsmAI GTCTC 1 cut(s) 521
BsnI GGCC 2 cut(s) 512, 741
Bso31I GGTCTC 1 cut(s) 521
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 4 cut(s) 85, 146, 358, 862
BspACI CCGC 1 cut(s) 344
BspANI GGCC 2 cut(s) 512, 741
BspCNI CTCAG 1 cut(s) 705
BspLI GGNNCC 3 cut(s) 193, 244, 786
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 3 cut(s) 80, 353, 870
BspQI GCTCTTC 2 cut(s) 702, 759
BspT104I TTCGAA 1 cut(s) 367
BspT107I GGYRCC 2 cut(s) 191, 242
BspTNI GGTCTC 1 cut(s) 521
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 4 cut(s) 85, 146, 358, 862
BssT1I CCWWGG 1 cut(s) 513
Bst4CI ACNGT 2 cut(s) 278, 601
Bst6I CTCTTC 2 cut(s) 702, 759
BstBI TTCGAA 1 cut(s) 367
BstDEI CTNAG 3 cut(s) 474, 692, 952
BstF5I GGATG 1 cut(s) 634
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 4 cut(s) 88, 149, 361, 865
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 4 cut(s) 85, 146, 358, 862
BstMWI GCNNNNNNNGC 4 cut(s) 160, 410, 419, 587
BstNSI RCATGY 1 cut(s) 850
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 4 cut(s) 286, 400, 574, 661
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 2 cut(s) 512, 741
BtsCI GGATG 1 cut(s) 634
BtsIMutI CAGTG 2 cut(s) 96, 156
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 740
Csp6I GTAC 4 cut(s) 192, 255, 669, 815
CviAII CATG 2 cut(s) 198, 847
CviQI GTAC 4 cut(s) 192, 255, 669, 815
DdeI CTNAG 3 cut(s) 474, 692, 952
DpnI GATC 4 cut(s) 87, 148, 360, 864
DpnII GATC 4 cut(s) 85, 146, 358, 862
Eam1104I CTCTTC 2 cut(s) 702, 759
EarI CTCTTC 2 cut(s) 702, 759
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 714
Eco31I GGTCTC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 780
EcoO109I RGGNCCY 1 cut(s) 740
EcoRI GAATTC 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 2 cut(s) 201, 850
FatI CATG 2 cut(s) 197, 846
FauNDI CATATG 1 cut(s) 607
Fnu4HI GCNGC 5 cut(s) 300, 345, 414, 588, 675
FokI GGATG 1 cut(s) 621
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 5 cut(s) 300, 345, 414, 588, 675
FspBI CTAG 4 cut(s) 258, 375, 666, 752
GlaI GCGC 1 cut(s) 164
GluI GCNGC 5 cut(s) 300, 345, 414, 588, 675
HaeIII GGCC 2 cut(s) 512, 741
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 201, 850
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 4 cut(s) 203, 565, 690, 755
HphI GGTGA 2 cut(s) 633, 935
Hpy188I TCNGA 7 cut(s) 175, 429, 505, 562, 695, 703, 760
Hpy188III TCNNGA 6 cut(s) 356, 485, 569, 729, 788, 947
HpyAV CCTTC 3 cut(s) 654, 731, 775
HpyCH4III ACNGT 2 cut(s) 278, 601
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 6 cut(s) 212, 231, 404, 466, 496, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 410, 419, 587
HpyF3I CTNAG 3 cut(s) 474, 692, 952
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 2 cut(s) 201, 850
HspAI GCGC 1 cut(s) 163
KpnI GGTACC 1 cut(s) 195
Kzo9I GATC 4 cut(s) 85, 146, 358, 862
LguI GCTCTTC 2 cut(s) 702, 759
LmnI GCTCC 1 cut(s) 790
LpnPI CCDG 4 cut(s) 56, 714, 756, 801
Lsp1109I GCAGC 4 cut(s) 286, 400, 574, 661
LweI GCATC 2 cut(s) 81, 574
MaeI CTAG 4 cut(s) 258, 375, 666, 752
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 804
MalI GATC 4 cut(s) 87, 148, 360, 864
MboI GATC 4 cut(s) 85, 146, 358, 862
MboII GAAGA 8 cut(s) 31, 125, 303, 623, 719, 773, 776, 929
MfeI CAATTG 1 cut(s) 226
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 8 cut(s) 13, 66, 226, 351, 497, 538, 775, 841
MlyI GAGTC 2 cut(s) 574, 684
MnlI CCTC 7 cut(s) 115, 400, 403, 429, 715, 919, 952
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 2 cut(s) 581, 674
MunI CAATTG 1 cut(s) 226
MwoI GCNNNNNNNGC 4 cut(s) 160, 410, 419, 587
NdeI CATATG 1 cut(s) 607
NdeII GATC 4 cut(s) 85, 146, 358, 862
NlaIII CATG 2 cut(s) 201, 850
NlaIV GGNNCC 3 cut(s) 193, 244, 786
NspI RCATGY 1 cut(s) 850
NspV TTCGAA 1 cut(s) 367
PciSI GCTCTTC 2 cut(s) 702, 759
PfeI GAWTC 2 cut(s) 203, 755
PkrI GCNGC 5 cut(s) 301, 346, 415, 589, 676
PleI GAGTC 2 cut(s) 573, 684
PpsI GAGTC 2 cut(s) 573, 684
PspN4I GGNNCC 3 cut(s) 193, 244, 786
PspPI GGNCC 1 cut(s) 740
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 358
PvuII CAGCTG 2 cut(s) 581, 674
RsaI GTAC 4 cut(s) 193, 256, 670, 816
RsaNI GTAC 4 cut(s) 192, 255, 669, 815
SapI GCTCTTC 2 cut(s) 702, 759
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 5 cut(s) 300, 345, 414, 588, 675
Sau3AI GATC 4 cut(s) 85, 146, 358, 862
Sau96I GGNCC 1 cut(s) 740
SchI GAGTC 2 cut(s) 574, 684
SduI GDGCHC 1 cut(s) 714
SetI ASST 7 cut(s) 239, 341, 583, 646, 676, 726, 930
SfaNI GCATC 2 cut(s) 81, 574
SfcI CTRYAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 8 cut(s) 13, 66, 226, 351, 497, 538, 775, 841
SsiI CCGC 1 cut(s) 344
SspI AATATT 3 cut(s) 133, 685, 826
SspMI CTAG 4 cut(s) 258, 375, 666, 752
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 278, 601
TaiI ACGT 1 cut(s) 341
TaqI TCGA 6 cut(s) 107, 270, 289, 355, 367, 441
TasI AATT 8 cut(s) 13, 66, 226, 351, 497, 538, 775, 841
TatI WGTACW 1 cut(s) 668
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 2 cut(s) 203, 755
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 103, 156
TseI GCWGC 4 cut(s) 299, 413, 587, 674
TspDTI ATGAA 8 cut(s) 17, 38, 210, 594, 624, 636, 720, 887
TspRI CASTG 2 cut(s) 103, 156
XapI RAATTY 3 cut(s) 13, 66, 351
XceI RCATGY 1 cut(s) 850
XspI CTAG 4 cut(s) 258, 375, 666, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.