Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Reverse (-)

61994198 .. 62008665

Gene Structure 14468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCAAGTGCAACCATTCCGTGTTTACTAGATCTGAGGGCGCCTCATCAAGGGGACAATTTCAGGCTTGCTCATTTCCCCGAGAGCTCGAGCTTGATGCACCCAGCATTGTCTAGCTTGGCTGCAAATTTCTCTTGGCCTTCTTCTTCTTGTCAACTGCCCCATAAGGTTGCAGTACCCTTATCTTGGCAGCCATACCAGAAGATTGTGGTTGGTGGCATGCAAGATGAAACATGTGTGTCTGGAGGTAGAATTGGCAATACCAATAAATCTGATGGCAGTAAGAAAAATCATAGATCCTATTCTATATATAAGGGAGTTCGGCGTAGAAAATGGGGTAAATATGCTGCAGAGATTCGTGATCCGTTTCGAGGGGTACGGGAGTGGATTGGCACTTTTGATACTGCAGAGGAGGCTTCTGTTGCTTATCAAAATAGGAGGCTTCTGTTTGATAACATGAAGTTAGAGTTAAAGAGAAAGGCTGAATATAAGGACTTGCAATTATCAAATGAGGCGTTTAAGAGTTCCCATTTAACAGTTGAGAGCAATCATCAGTATGAGTGTCAAAGCTTTCATTTATTGAGGGAGAGTCAGGATTCATCAGTAGCTGCTGCTGCTAATGAAACCTTTTCATATGAAGAGACTGCAACTGCACTTGGTATTCGACTCTCCAATGGGGAGGTTTTTCAGCCAGAAGGCTCTATGCAACCGCTTTCCGAGGAAGAGCTATCCAATTTGAAATTTCCTGAAGTGCCAATATCATCAGCAATAAGTGCTGAAGAAGGCTACGTGCAACCACTTTCCGAAGAAGAGCTATCCGTTTTGAAATTTCCTGAAGTGCCAATATTTTCAGCAATAATCGCTGAAGAAGGCTCTGTTCAACCGCTTTCTGAAGAAGAGCATTTCAATTTGAAATTTACTGAAGTGCCAATATTGTCACCAATAATAACCGAAGTTTGGGGATTTATGAATTTGGGATTTGTGGACAATGACATATTTGATGGTTTGGATCAGTTGTTTGTTGGTAGGAGTGACATAGTTGATCCTCCTGTGCATTGTCATGGAAATGGTGAGAATATCAGTCTTCCTCCTAGTAAGTTTCTTATGAGTGACTTGGCAGGGTTTTGCTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

378

Amino Acids

42.18

Weight (kDa)

5.03

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	104 - 144	2e-07	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AciI	CCGC	2 cut(s)	710, 884
AclWI	GGATC	4 cut(s)	291, 356, 1017, 1037
AcsI	RAATTY	5 cut(s)	127, 740, 827, 914, 970
AcuI	CTGAAG	6 cut(s)	768, 798, 855, 885, 912, 942
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	2 cut(s)	177, 378
AfiI	CCNNNNNNNGG	4 cut(s)	50, 186, 371, 957
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	5 cut(s)	739, 826, 881, 907, 913
AluBI	AGCT	7 cut(s)	87, 93, 117, 570, 608, 727, 814
AluI	AGCT	7 cut(s)	87, 93, 117, 570, 608, 727, 814
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	4 cut(s)	291, 356, 1017, 1037
AlwNI	CAGNNNCTG	1 cut(s)	608
Ama87I	CYCGRG	2 cut(s)	80, 88
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	6 cut(s)	122, 190, 347, 608, 611, 614
ApoI	RAATTY	5 cut(s)	127, 740, 827, 914, 970
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	930, 1082
AvaI	CYCGRG	2 cut(s)	80, 88
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	1076
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	6 cut(s)	109, 202, 334, 595, 598, 601
BccI	CCATC	2 cut(s)	269, 995
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	3 cut(s)	29, 114, 1092
BfmI	CTRYAG	2 cut(s)	348, 405
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	6 cut(s)	123, 191, 348, 609, 612, 615
BlsI	GCNGC	6 cut(s)	124, 192, 349, 610, 613, 616
BmeT110I	CYCGRG	2 cut(s)	80, 88
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	1076
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpmI	CTGGAG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	790
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	717
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 186, 371, 957
BseDI	CCNNGG	1 cut(s)	717
BseLI	CCNNNNNNNGG	4 cut(s)	50, 186, 371, 957
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	6 cut(s)	109, 202, 334, 595, 598, 601
BseYI	CCCAGC	2 cut(s)	103, 1128
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	2 cut(s)	80, 88
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	4 cut(s)	50, 186, 371, 957
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	139
BsoBI	CYCGRG	2 cut(s)	80, 88
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	5 cut(s)	31, 296, 361, 1009, 1042
BspACI	CCGC	2 cut(s)	710, 884
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	2 cut(s)	352, 409
BspPI	GGATC	4 cut(s)	291, 356, 1017, 1037
BspQI	GCTCTTC	3 cut(s)	717, 804, 891
BspT107I	GGYRCC	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	5 cut(s)	31, 296, 361, 1009, 1042
BssNI	GRCGYC	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	4 cut(s)	633, 717, 804, 891
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstBAI	YACGTR	1 cut(s)	790
BstC8I	GCNNGC	2 cut(s)	69, 221
BstDEI	CTNAG	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	5 cut(s)	34, 299, 364, 1012, 1045
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	5 cut(s)	31, 296, 361, 1009, 1042
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 422, 614, 773, 860
BstNSI	RCATGY	2 cut(s)	223, 237
BstSFI	CTRYAG	2 cut(s)	348, 405
BstV1I	GCAGC	6 cut(s)	109, 202, 334, 595, 598, 601
BstV2I	GAAGAC	1 cut(s)	1076
BstX2I	RGATCY	2 cut(s)	31, 296
BstYI	RGATCY	2 cut(s)	31, 296
BsuRI	GGCC	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	69, 221
CaiI	CAGNNNCTG	1 cut(s)	608
CfoI	GCGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	176, 377
CviAII	CATG	4 cut(s)	220, 234, 457, 1061
CviQI	GTAC	2 cut(s)	176, 377
DdeI	CTNAG	1 cut(s)	35
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	5 cut(s)	33, 298, 363, 1011, 1044
DpnII	GATC	5 cut(s)	31, 296, 361, 1009, 1042
Eam1104I	CTCTTC	4 cut(s)	633, 717, 804, 891
EarI	CTCTTC	4 cut(s)	633, 717, 804, 891
Ecl136II	GAGCTC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	6 cut(s)	768, 798, 855, 885, 912, 942
Eco88I	CYCGRG	2 cut(s)	80, 88
EcoICRI	GAGCTC	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	89
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaeI	CATG	4 cut(s)	223, 237, 460, 1064
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	4 cut(s)	219, 233, 456, 1060
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	6 cut(s)	123, 191, 348, 609, 612, 615
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	6 cut(s)	123, 191, 348, 609, 612, 615
FspBI	CTAG	3 cut(s)	29, 114, 1092
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	6 cut(s)	123, 191, 348, 609, 612, 615
GsaI	CCCAGC	2 cut(s)	107, 1132
GsuI	CTGGAG	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	223, 237, 460, 1064
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	568
HinfI	GANTC	4 cut(s)	355, 589, 596, 666
HphI	GGTGA	2 cut(s)	930, 1082
Hpy166II	GTNNAC	3 cut(s)	26, 155, 985
Hpy188I	TCNGA	5 cut(s)	36, 274, 718, 805, 892
Hpy188III	TCNNGA	5 cut(s)	243, 359, 593, 746, 833
Hpy8I	GTNNAC	3 cut(s)	26, 155, 985
HpyAV	CCTTC	4 cut(s)	150, 689, 776, 863
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	1 cut(s)	789
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 422, 614, 773, 860
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	789
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	223, 237, 460, 1064
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	31, 296, 361, 1009, 1042
LguI	GCTCTTC	3 cut(s)	717, 804, 891
Lsp1109I	GCAGC	6 cut(s)	109, 202, 334, 595, 598, 601
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	3 cut(s)	29, 114, 1092
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	3 cut(s)	936, 1031, 1109
MalI	GATC	5 cut(s)	33, 298, 363, 1011, 1044
MboI	GATC	5 cut(s)	31, 296, 361, 1009, 1042
MflI	RGATCY	2 cut(s)	31, 296
MhlI	GDGCHC	1 cut(s)	89
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	598, 660
MseI	TTAA	3 cut(s)	470, 519, 533
MslI	CAYNNNNRTG	3 cut(s)	555, 1059, 1065
MwoI	GCNNNNNNNGC	5 cut(s)	413, 422, 614, 773, 860
NarI	GGCGCC	1 cut(s)	41
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	5 cut(s)	31, 296, 361, 1009, 1042
NlaIII	CATG	4 cut(s)	223, 237, 460, 1064
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	3 cut(s)	936, 1031, 1109
NspI	RCATGY	2 cut(s)	223, 237
PaeI	GCATGC	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	88
PciI	ACATGT	1 cut(s)	233
PciSI	GCTCTTC	3 cut(s)	717, 804, 891
PfeI	GAWTC	2 cut(s)	355, 596
PkrI	GCNGC	6 cut(s)	124, 192, 349, 610, 613, 616
PleI	GAGTC	2 cut(s)	597, 660
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	2 cut(s)	597, 660
Ppu21I	YACGTR	1 cut(s)	790
PscI	ACATGT	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	89
PspFI	CCCAGC	2 cut(s)	103, 1128
PspN4I	GGNNCC	1 cut(s)	42
PspXI	VCTCGAGB	1 cut(s)	88
PstI	CTGCAG	2 cut(s)	352, 409
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	31, 296
RsaI	GTAC	2 cut(s)	177, 378
RsaNI	GTAC	2 cut(s)	176, 377
RseI	CAYNNNNRTG	3 cut(s)	555, 1059, 1065
SacI	GAGCTC	1 cut(s)	89
SapI	GCTCTTC	3 cut(s)	717, 804, 891
SaqAI	TTAA	3 cut(s)	470, 519, 533
SatI	GCNGC	6 cut(s)	123, 191, 348, 609, 612, 615
Sau3AI	GATC	5 cut(s)	31, 296, 361, 1009, 1042
SchI	GAGTC	2 cut(s)	598, 660
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	2 cut(s)	348, 405
SfoI	GGCGCC	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	3 cut(s)	555, 1059, 1065
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	1 cut(s)	223
SsiI	CCGC	2 cut(s)	710, 884
SspDI	GGCGCC	1 cut(s)	40
SspI	AATATT	2 cut(s)	846, 933
SspMI	CTAG	3 cut(s)	29, 114, 1092
SstI	GAGCTC	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	3 cut(s)	89, 370, 664
TfiI	GAWTC	2 cut(s)	355, 596
Tru1I	TTAA	3 cut(s)	470, 519, 533
Tru9I	TTAA	3 cut(s)	470, 519, 533
TseFI	GTSAC	3 cut(s)	936, 1031, 1109
TseI	GCWGC	6 cut(s)	122, 190, 347, 608, 611, 614
Tsp45I	GTSAC	3 cut(s)	936, 1031, 1109
TspDTI	ATGAA	8 cut(s)	243, 473, 563, 588, 621, 636, 651, 983
TspGWI	ACGGA	3 cut(s)	9, 354, 808
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	5 cut(s)	127, 740, 827, 914, 970
XceI	RCATGY	2 cut(s)	223, 237
XhoI	CTCGAG	1 cut(s)	88
XspI	CTAG	3 cut(s)	29, 114, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.