Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Forward (+)

34792884 .. 34795066

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1215500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCCGGGGATGAAAACCGTAATCTTGAATCAACATGTGAGCTGGAACAAATTGAAGAAAAAGCAACCTACCGTAGAGGAGAATGCAGGTTACATGAAGAGAATTCGGATTATATACAATGATCCTGATGGTACCGACTCTTCGAGTGAAGATGATGAGGAATATGACATTGAGGGAAACCTATTTCAGCATAGTAAGCGCTTTGTTTCGGAGATTTTGGTTGTGGAAACAGAATGTGAATCATCTGCAGGGACCAATGGAGGCAGAATTGGTCATAGTACGGACTTTGATGACTCTAAGAAAAGTAATAGACTGCTCCCTAAGGGAGTTCGACGCAGAAAATGGGGAAAATATGCTGCGGAGATTCGAGATCCAATTCAAGGAATTCGAAAATGGCTTGGCACTTTTAATACAGCAGAGGAGGCTGCTGCTGCATATCAACAAAAGAAGCGTGAGTTTCAGACCATACAGTCACAGCGAAGGACTAAGAGCCACTGTGAAAACATGCCATTATCAGATAAGCATGAGTTTGAGAGTATGCAATTAACGGAGGGAGACAAGCATGGGCTTCAAGGCGTTCCTTTATCAGAGGAGAGTCAGGATTCATCGTTTTGCCATCCATCACCATCATCTGTGCTTGAAATGTCTGGTTCAGCTGCGCTTTGTTTTGGACTCGAAAGGTCGAAAGAAGAATCTGGGGTGGAAGTTTCTGGGGGACAAGGCACTCTACAGCAACCAGTTTTTGAAGAAGAAGAATCCATTCCAATGTTGCCTCCAATGTTGCCACCGTTAGATGTCGAACAGTTGAATTTGGGATGCGGCGACAATTACGTGTTTTCTAGCTTGGATCAGTTCTTTGATGGCATGTGTGATATTGTTGATGATGGTATGACAGACATAGTTGATTATCCCGCGTGCAAGGATAAAAAAGGCGAGGCTACGTGTCTTCCCCCTCTCGACTTCAATTTTGGTCAGCAGGATTTCTCCTGGATTGATCAGAAACTGGAACACGGTAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

341

Amino Acids

38.15

Weight (kDa)

4.86

Isoelectric Point (pI)

63.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	108 - 148	2.6e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	77
Acc65I	GGTACC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	131
AccII	CGCG	1 cut(s)	914
AciI	CCGC	3 cut(s)	359, 819, 912
AclWI	GGATC	3 cut(s)	116, 365, 855
AcsI	RAATTY	3 cut(s)	102, 384, 808
AfaI	GTAC	2 cut(s)	133, 280
AfeI	AGCGCT	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	3 cut(s)	34, 831, 941
AgsI	TTSAA	8 cut(s)	28, 55, 380, 572, 641, 746, 808, 964
AjnI	CCWGG	1 cut(s)	986
AluBI	AGCT	3 cut(s)	42, 656, 843
AluI	AGCT	3 cut(s)	42, 656, 843
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	3 cut(s)	116, 365, 855
AlwNI	CAGNNNCTG	1 cut(s)	1003
Aor51HI	AGCGCT	1 cut(s)	200
ApeKI	GCWGC	5 cut(s)	356, 425, 428, 431, 656
ApoI	RAATTY	3 cut(s)	102, 384, 808
ArsI	GACNNNNNNTTYG	2 cut(s)	950, 982
Asp700I	GAANNNNTTC	1 cut(s)	759
Asp718I	GGTACC	1 cut(s)	131
AspLEI	GCGC	2 cut(s)	201, 661
AspS9I	GGNCC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	615
AsuII	TTCGAA	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	252
AxyI	CCTNAGG	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	124, 156
BbsI	GAAGAC	1 cut(s)	938
BbvI	GCAGC	5 cut(s)	343, 412, 415, 418, 643
BccI	CCATC	6 cut(s)	122, 624, 628, 634, 854, 878
BciT130I	CCWGG	1 cut(s)	988
BclI	TGATCA	1 cut(s)	994
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	840
BfmI	CTRYAG	2 cut(s)	246, 728
BfoI	RGCGCY	1 cut(s)	202
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 820
BlsI	GCNGC	6 cut(s)	358, 427, 430, 433, 658, 821
Bme1390I	CCNGG	2 cut(s)	6, 988
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	133, 253
BmrFI	CCNGG	2 cut(s)	6, 988
BmsI	GCATC	1 cut(s)	806
BpiI	GAAGAC	1 cut(s)	938
Bpu14I	TTCGAA	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	6
BsaAI	YACGTR	2 cut(s)	832, 942
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	737, 1008
Bse21I	CCTNAGG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	988
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	3 cut(s)	15, 616, 821
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	737, 1008
BseRI	GAGGAG	3 cut(s)	92, 434, 605
BseXI	GCAGC	5 cut(s)	343, 412, 415, 418, 643
Bsh1236I	CGCG	1 cut(s)	914
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	265, 729
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	2 cut(s)	265, 729
BsmI	GAATGC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	388
Bsp143I	GATC	4 cut(s)	121, 370, 847, 994
BspACI	CCGC	3 cut(s)	359, 819, 912
BspFNI	CGCG	1 cut(s)	914
BspLI	GGNNCC	2 cut(s)	133, 253
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	3 cut(s)	116, 365, 855
BspT104I	TTCGAA	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	737, 1008
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	4 cut(s)	121, 370, 847, 994
Bst2UI	CCWGG	1 cut(s)	988
Bst4CI	ACNGT	7 cut(s)	19, 73, 471, 497, 789, 804, 1013
Bst6I	CTCTTC	2 cut(s)	92, 145
BstBAI	YACGTR	2 cut(s)	832, 942
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	916
BstDEI	CTNAG	3 cut(s)	297, 321, 486
BstF5I	GGATG	3 cut(s)	15, 616, 821
BstFNI	CGCG	1 cut(s)	914
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	2 cut(s)	201, 661
BstKTI	GATC	4 cut(s)	124, 373, 850, 997
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	4 cut(s)	121, 370, 847, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 422, 431
BstNI	CCWGG	1 cut(s)	988
BstNSI	RCATGY	3 cut(s)	38, 508, 868
BstSCI	CCNGG	2 cut(s)	4, 986
BstSFI	CTRYAG	2 cut(s)	246, 728
BstUI	CGCG	1 cut(s)	914
BstV1I	GCAGC	5 cut(s)	343, 412, 415, 418, 643
BstV2I	GAAGAC	1 cut(s)	938
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
Bsu36I	CCTNAGG	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	15, 616, 821
BtsIMutI	CAGTG	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	916
CaiI	CAGNNNCTG	1 cut(s)	1003
CfoI	GCGC	2 cut(s)	201, 661
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	132, 279
CviAII	CATG	7 cut(s)	35, 94, 505, 524, 563, 865, 1020
CviJI	RGCY	9 cut(s)	42, 397, 425, 492, 568, 656, 843, 938, 1018
CviKI_1	RGCY	9 cut(s)	42, 397, 425, 492, 568, 656, 843, 938, 1018
CviQI	GTAC	2 cut(s)	132, 279
DdeI	CTNAG	3 cut(s)	297, 321, 486
DpnI	GATC	4 cut(s)	123, 372, 849, 996
DpnII	GATC	4 cut(s)	121, 370, 847, 994
DrdI	GACNNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	92, 145
EarI	CTCTTC	2 cut(s)	92, 145
Eco47I	GGWCC	1 cut(s)	252
Eco47III	AGCGCT	1 cut(s)	200
Eco81I	CCTNAGG	1 cut(s)	321
EcoRI	GAATTC	2 cut(s)	102, 384
EcoRII	CCWGG	1 cut(s)	986
FaeI	CATG	7 cut(s)	38, 97, 508, 527, 566, 868, 1023
FaqI	GGGAC	2 cut(s)	265, 729
FatI	CATG	7 cut(s)	34, 93, 504, 523, 562, 864, 1019
FauI	CCCGC	1 cut(s)	919
FbaI	TGATCA	1 cut(s)	994
Fnu4HI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 820
FokI	GGATG	3 cut(s)	22, 603, 828
Fsp4HI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 820
FspBI	CTAG	1 cut(s)	840
GlaI	GCGC	2 cut(s)	200, 660
GluI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 820
HaeII	RGCGCY	1 cut(s)	202
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	2 cut(s)	201, 661
Hin1II	CATG	7 cut(s)	38, 97, 508, 527, 566, 868, 1023
Hin6I	GCGC	2 cut(s)	199, 659
HinP1I	GCGC	2 cut(s)	199, 659
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	615
Hpy188I	TCNGA	6 cut(s)	108, 211, 462, 517, 589, 999
Hpy188III	TCNNGA	5 cut(s)	25, 125, 368, 599, 956
Hpy99I	CGWCG	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	7 cut(s)	19, 73, 471, 497, 789, 804, 1013
HpyCH4IV	ACGT	2 cut(s)	831, 941
HpyCH4V	TGCA	5 cut(s)	86, 248, 434, 541, 918
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 422, 431
HpyF3I	CTNAG	3 cut(s)	297, 321, 486
HpySE526I	ACGT	2 cut(s)	831, 941
Hsp92II	CATG	7 cut(s)	38, 97, 508, 527, 566, 868, 1023
HspAI	GCGC	2 cut(s)	199, 659
KpnI	GGTACC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	994
Kzo9I	GATC	4 cut(s)	121, 370, 847, 994
LmnI	GCTCC	1 cut(s)	321
Lsp1109I	GCAGC	5 cut(s)	343, 412, 415, 418, 643
LweI	GCATC	1 cut(s)	806
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	2 cut(s)	831, 941
MaeIII	GTNAC	2 cut(s)	89, 471
MalI	GATC	4 cut(s)	123, 372, 849, 996
MboI	GATC	4 cut(s)	121, 370, 847, 994
MboII	GAAGA	9 cut(s)	67, 109, 132, 161, 701, 758, 761, 764, 938
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	9 cut(s)	50, 102, 267, 375, 384, 542, 808, 826, 964
MlyI	GAGTC	4 cut(s)	131, 287, 604, 666
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	2 cut(s)	408, 545
MslI	CAYNNNNRTG	1 cut(s)	764
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	6, 988
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	988
MvnI	CGCG	1 cut(s)	914
MwoI	GCNNNNNNNGC	3 cut(s)	196, 422, 431
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	121, 370, 847, 994
NlaIII	CATG	7 cut(s)	38, 97, 508, 527, 566, 868, 1023
NlaIV	GGNNCC	2 cut(s)	133, 253
NmuCI	GTSAC	1 cut(s)	471
NspI	RCATGY	3 cut(s)	38, 508, 868
NspV	TTCGAA	1 cut(s)	388
PciI	ACATGT	1 cut(s)	34
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	6 cut(s)	28, 239, 364, 602, 692, 755
PfoI	TCCNGGA	1 cut(s)	986
PkrI	GCNGC	6 cut(s)	358, 427, 430, 433, 658, 821
PleI	GAGTC	4 cut(s)	131, 287, 603, 666
PpsI	GAGTC	4 cut(s)	131, 287, 603, 666
Ppu21I	YACGTR	2 cut(s)	832, 942
PscI	ACATGT	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	986
PspGI	CCWGG	1 cut(s)	986
PspN4I	GGNNCC	2 cut(s)	133, 253
PspPI	GGNCC	1 cut(s)	252
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	1003
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	2 cut(s)	133, 280
RsaNI	GTAC	2 cut(s)	132, 279
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	2 cut(s)	408, 545
SatI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 820
Sau3AI	GATC	4 cut(s)	121, 370, 847, 994
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	4 cut(s)	131, 287, 604, 666
ScrFI	CCNGG	2 cut(s)	6, 988
SetI	ASST	9 cut(s)	44, 70, 91, 183, 658, 683, 834, 845, 944
SfaNI	GCATC	1 cut(s)	806
SfcI	CTRYAG	2 cut(s)	246, 728
SfuI	TTCGAA	1 cut(s)	388
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	764
Sse9I	AATT	9 cut(s)	50, 102, 267, 375, 384, 542, 808, 826, 964
SsiI	CCGC	3 cut(s)	359, 819, 912
SspMI	CTAG	1 cut(s)	840
StyD4I	CCNGG	2 cut(s)	4, 986
TaaI	ACNGT	7 cut(s)	19, 73, 471, 497, 789, 804, 1013
TaiI	ACGT	2 cut(s)	834, 944
TaqI	TCGA	8 cut(s)	143, 331, 367, 388, 675, 683, 798, 957
TasI	AATT	9 cut(s)	50, 102, 267, 375, 384, 542, 808, 826, 964
TauI	GCSGC	1 cut(s)	822
TfiI	GAWTC	6 cut(s)	28, 239, 364, 602, 692, 755
Tru1I	TTAA	2 cut(s)	408, 545
Tru9I	TTAA	2 cut(s)	408, 545
TscAI	CASTG	1 cut(s)	500
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	5 cut(s)	356, 425, 428, 431, 656
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	3 cut(s)	26, 110, 594
TspGWI	ACGGA	2 cut(s)	296, 563
TspRI	CASTG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	3 cut(s)	102, 384, 808
XceI	RCATGY	3 cut(s)	38, 508, 868
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.