Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Reverse (-)

22192350 .. 22194718

Gene Structure 2369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1152300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCAGTGATGGAGAAGCTCAGGATGTTCGTCGCTCAGGAGCCTGTCGTCGCAGCTTCTTGCCTCATCGCCGGCGTTGGTCTCTTTCTTCCAGCTGTAGTAAGGCCAATTCTTGATTCCTTTGAAGCTTCTAAGCAAGTCCCTCAGCCTGCTTTAAGCGATGTGGTTGCAGGTATGACAGGTAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

6.61

Weight (kDa)

7.92

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	4 cut(s)	19, 56, 95, 128
AluI	AGCT	4 cut(s)	19, 56, 95, 128
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcoDI	GTCTC	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	42
Bpu10I	CCTNAGC	3 cut(s)	20, 36, 144
BsaI	GGTCTC	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	71
BseGI	GGATG	1 cut(s)	30
BseMII	CTCAG	3 cut(s)	34, 50, 158
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	3 cut(s)	33, 49, 157
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	73, 150
BstDEI	CTNAG	4 cut(s)	20, 36, 132, 144
BstF5I	GGATG	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	106
BtgZI	GCGATG	2 cut(s)	52, 174
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	73, 150
Cfr10I	RCCGGY	1 cut(s)	71
CviJI	RGCY	7 cut(s)	19, 43, 56, 95, 106, 128, 148
CviKI_1	RGCY	7 cut(s)	19, 43, 56, 95, 106, 128, 148
DdeI	CTNAG	4 cut(s)	20, 36, 132, 144
Eco31I	GGTCTC	1 cut(s)	86
FaiI	YATR	1 cut(s)	176
FaqI	GGGAC	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	22, 38, 113
Hpy99I	CGWCG	2 cut(s)	35, 53
HpyCH4V	TGCA	1 cut(s)	170
HpyF3I	CTNAG	4 cut(s)	20, 36, 132, 144
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	8 cut(s)	7, 23, 57, 85, 105, 156, 162, 165
Lsp1109I	GCAGC	1 cut(s)	65
MboII	GAAGA	1 cut(s)	80
MluCI	AATT	1 cut(s)	108
MnlI	CCTC	2 cut(s)	74, 153
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	72
NaeI	GCCGGC	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	54
SetI	ASST	6 cut(s)	21, 58, 97, 130, 175, 184
SfcI	CTRYAG	1 cut(s)	96
SgrAI	CRCCGGYG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	108
TasI	AATT	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.