RchiOBHm_Chr7g0185311

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002102
Physical Location & Seq
Forward (+)
5493051 .. 5495508
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16536

Sequence Viewer

Length: 1146 bp
ATGCCGGGGATTAGAACCCAAGTCTTGAATCAAGATGTGTGTTATAAGAAACTGATGGCAAAGCAACCAAGAAAAGAAGAGGATACAAGTTTCAAGAAGAAAGTTCGAATTATGTACACTGATCCCTATGCTACTGATTCTTCGAGTGAAGATGATGAGCAATGTAATGCTACTGAGTATCAATCTGTGCCCAGAAAGAAGGTATTTGTTTCGGAGATTGTGGTTGGTGGCATGCAAGATGAATCATGTGTGTCTGGAGGTAGAATTGGTAATACCAATAAATCTGATGGCAGTAAGAAAAATCATAGATCCTATTCTGTATATAAGGGAGTTCGGCGTAGAAAATGGGGTAAATATGCTGCAGAGATTCGTGATCCGTTTCGAGGGGTACGGGAGTGGATTGGCACTTTTGATACTGCAGAGGAGGCTTCTGTTGCTTATCAAAATAGGAGGCTTCTGTTTGATAACATGAAGTTAGAGTTAAAGAGAAAGACTGAATATAAGGACTTGCAATTATCAAATGAGGCGTTTAAAAGTTCTCATTTAACAGTTGAGAGCAATCATCAGTATGAGTGTCAAAGCTTTCATTTATTGAGGGAGAGTCGGGATTCATCAGTAGCTGCTGCTGCTAATGAAACCTTTTCATATGAAGAGACCGCAAGTTTGTTTTGTCATCCATCACCATCATCTGTTTTTCAGCCAGAAGGCTCTGTGCAACCGCTTTCCAAAGAAGAGCTATCCAATTTGAAATTTCCTGAAGTGCCAATATCATCAGCAATAAGTGCTGAAGAAGGCTACGTGCGACCACTTTCTGAAGAAGAGCTATCCGTTTTGAAATTTCCTGAAGTGCCAATATCATCAGCAATAATTGCTGAAGAAGGCTCTGTTCAACCGCTTTCTGAAGAAGAGCATTTCAATTTGAAATTTACTCAAGTGCCAATATTGTCACCAATAAGAACCGAAGTTTGGGGATTTATGAATTTGGGATTTGTAGACAATGACATATTTGATGGTTTGGATCAGTTGTTTGTTGGTAGGAGTGACATAGTTGATCTTCCTGTGCATCGTCATGGAAATGGTGAGAATATCAGTCTTCCTCCTAGTAAGTTTCTAATGAGTGACTTGGCAGGGTTTTACTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

381

Amino Acids

43.19

Weight (kDa)

5.33

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 106 - 148 7.5e-08 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AccI GTMKAC 1 cut(s) 993
AciI CCGC 3 cut(s) 657, 719, 893
AclWI GGATC 4 cut(s) 116, 303, 368, 1026
AcsI RAATTY 4 cut(s) 749, 836, 923, 979
AcuI CTGAAG 6 cut(s) 777, 807, 834, 864, 894, 921
AfaI GTAC 2 cut(s) 116, 390
AfiI CCNNNNNNNGG 2 cut(s) 383, 966
AgsI TTSAA 7 cut(s) 28, 94, 748, 835, 890, 916, 922
AjuI GAANNNNNNNTTGG 2 cut(s) 949, 981
AluBI AGCT 4 cut(s) 582, 620, 736, 823
AluI AGCT 4 cut(s) 582, 620, 736, 823
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 4 cut(s) 116, 303, 368, 1026
AlwNI CAGNNNCTG 1 cut(s) 620
ApeKI GCWGC 4 cut(s) 359, 620, 623, 626
ApoI RAATTY 4 cut(s) 749, 836, 923, 979
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 3 cut(s) 672, 939, 1091
AsuII TTCGAA 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 192
BaeI ACNNNNGTAYC 2 cut(s) 380, 413
BbsI GAAGAC 1 cut(s) 1085
BbvI GCAGC 4 cut(s) 346, 607, 610, 613
BccI CCATC 5 cut(s) 49, 281, 685, 691, 1004
BciVI GTATCC 1 cut(s) 76
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 1 cut(s) 1101
BfmI CTRYAG 2 cut(s) 360, 417
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 4 cut(s) 360, 621, 624, 627
BlsI GCNGC 4 cut(s) 361, 622, 625, 628
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 1 cut(s) 1072
BpiI GAAGAC 1 cut(s) 1085
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 915
BpuMI CCSGG 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 799
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 966
Bse1I ACTGG 1 cut(s) 1142
Bse3DI GCAATG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 2 cut(s) 383, 966
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 1142
BseRI GAGGAG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 4 cut(s) 346, 607, 610, 613
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 383, 966
BsmAI GTCTC 1 cut(s) 647
Bso31I GGTCTC 1 cut(s) 647
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 5 cut(s) 121, 308, 373, 1018, 1051
BspACI CCGC 3 cut(s) 657, 719, 893
BspCNI CTCAG 1 cut(s) 166
BspMAI CTGCAG 2 cut(s) 364, 421
BspPI GGATC 4 cut(s) 116, 303, 368, 1026
BspQI GCTCTTC 3 cut(s) 726, 813, 900
BspT104I TTCGAA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 114
BsrI ACTGG 1 cut(s) 1142
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 5 cut(s) 121, 308, 373, 1018, 1051
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 5 cut(s) 72, 645, 726, 813, 900
BstAPI GCANNNNNTGC 2 cut(s) 782, 869
BstAUI TGTACA 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 799
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 673
BstKTI GATC 5 cut(s) 124, 311, 376, 1021, 1054
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 5 cut(s) 121, 308, 373, 1018, 1051
BstMWI GCNNNNNNNGC 5 cut(s) 425, 434, 626, 782, 869
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 2 cut(s) 360, 417
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 346, 607, 610, 613
BstV2I GAAGAC 1 cut(s) 1085
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuI GTATCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 673
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 620
Csp6I GTAC 2 cut(s) 115, 389
CviAII CATG 4 cut(s) 232, 246, 469, 1070
CviQI GTAC 2 cut(s) 115, 389
DdeI CTNAG 1 cut(s) 174
DpnI GATC 5 cut(s) 123, 310, 375, 1020, 1053
DpnII GATC 5 cut(s) 121, 308, 373, 1018, 1051
DraI TTTAAA 1 cut(s) 532
Eam1104I CTCTTC 5 cut(s) 72, 645, 726, 813, 900
EarI CTCTTC 5 cut(s) 72, 645, 726, 813, 900
Eco31I GGTCTC 1 cut(s) 647
Eco57I CTGAAG 6 cut(s) 777, 807, 834, 864, 894, 921
FaeI CATG 4 cut(s) 235, 249, 472, 1073
FatI CATG 4 cut(s) 231, 245, 468, 1069
FauNDI CATATG 1 cut(s) 646
FblI GTMKAC 1 cut(s) 993
Fnu4HI GCNGC 4 cut(s) 360, 621, 624, 627
FokI GGATG 1 cut(s) 660
Fsp4HI GCNGC 4 cut(s) 360, 621, 624, 627
FspBI CTAG 1 cut(s) 1101
GluI GCNGC 4 cut(s) 360, 621, 624, 627
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 1 cut(s) 5
Hin1II CATG 4 cut(s) 235, 249, 472, 1073
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 6 cut(s) 28, 137, 242, 367, 601, 608
HpaII CCGG 1 cut(s) 5
HphI GGTGA 3 cut(s) 672, 939, 1091
Hpy166II GTNNAC 2 cut(s) 117, 994
Hpy188I TCNGA 4 cut(s) 214, 286, 814, 901
Hpy188III TCNNGA 8 cut(s) 25, 32, 94, 255, 371, 605, 755, 842
Hpy8I GTNNAC 2 cut(s) 117, 994
HpyAV CCTTC 4 cut(s) 193, 698, 785, 872
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 1 cut(s) 798
HpyCH4V TGCA 6 cut(s) 235, 362, 419, 511, 715, 1063
HpyF10VI GCNNNNNNNGC 5 cut(s) 425, 434, 626, 782, 869
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 798
Hsp92II CATG 4 cut(s) 235, 249, 472, 1073
Kzo9I GATC 5 cut(s) 121, 308, 373, 1018, 1051
LguI GCTCTTC 3 cut(s) 726, 813, 900
LpnPI CCDG 9 cut(s) 18, 205, 240, 714, 768, 855, 1071, 1113, 1123
Lsp1109I GCAGC 4 cut(s) 346, 607, 610, 613
LweI GCATC 1 cut(s) 1072
MaeI CTAG 1 cut(s) 1101
MaeII ACGT 1 cut(s) 798
MaeIII GTNAC 3 cut(s) 945, 1040, 1118
MalI GATC 5 cut(s) 123, 310, 375, 1020, 1053
MboI GATC 5 cut(s) 121, 308, 373, 1018, 1051
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 192
MlyI GAGTC 1 cut(s) 610
MnlI CCTC 9 cut(s) 73, 251, 377, 415, 418, 444, 517, 588, 1107
MseI TTAA 3 cut(s) 482, 531, 545
MslI CAYNNNNRTG 3 cut(s) 567, 1068, 1074
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MwoI GCNNNNNNNGC 5 cut(s) 425, 434, 626, 782, 869
NciI CCSGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 646
NdeII GATC 5 cut(s) 121, 308, 373, 1018, 1051
NlaIII CATG 4 cut(s) 235, 249, 472, 1073
NmuCI GTSAC 3 cut(s) 945, 1040, 1118
NspI RCATGY 1 cut(s) 235
NspV TTCGAA 1 cut(s) 106
PaeI GCATGC 1 cut(s) 235
PciSI GCTCTTC 3 cut(s) 726, 813, 900
PfeI GAWTC 5 cut(s) 28, 137, 242, 367, 608
PkrI GCNGC 4 cut(s) 361, 622, 625, 628
PleI GAGTC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 609
Ppu21I YACGTR 1 cut(s) 799
PsiI TTATAA 1 cut(s) 45
PstI CTGCAG 2 cut(s) 364, 421
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 2 cut(s) 116, 390
RsaNI GTAC 2 cut(s) 115, 389
RseI CAYNNNNRTG 3 cut(s) 567, 1068, 1074
SapI GCTCTTC 3 cut(s) 726, 813, 900
SaqAI TTAA 3 cut(s) 482, 531, 545
SatI GCNGC 4 cut(s) 360, 621, 624, 627
Sau3AI GATC 5 cut(s) 121, 308, 373, 1018, 1051
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 1 cut(s) 192
SetI ASST 8 cut(s) 204, 262, 584, 622, 641, 738, 801, 825
SfaNI GCATC 1 cut(s) 1072
SfcI CTRYAG 2 cut(s) 360, 417
SfuI TTCGAA 1 cut(s) 106
SmiMI CAYNNNNRTG 3 cut(s) 567, 1068, 1074
SmlI CTYRAG 1 cut(s) 930
SmoI CTYRAG 1 cut(s) 930
SphI GCATGC 1 cut(s) 235
SsiI CCGC 3 cut(s) 657, 719, 893
SspI AATATT 1 cut(s) 942
SspMI CTAG 1 cut(s) 1101
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 1 cut(s) 801
TaqI TCGA 3 cut(s) 106, 143, 382
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 5 cut(s) 28, 137, 242, 367, 608
Tru1I TTAA 3 cut(s) 482, 531, 545
Tru9I TTAA 3 cut(s) 482, 531, 545
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 3 cut(s) 945, 1040, 1118
TseI GCWGC 4 cut(s) 359, 620, 623, 626
Tsp45I GTSAC 3 cut(s) 945, 1040, 1118
TspDTI ATGAA 8 cut(s) 255, 485, 575, 600, 633, 648, 663, 992
TspGWI ACGGA 2 cut(s) 366, 817
TspRI CASTG 1 cut(s) 124
XapI RAATTY 4 cut(s) 749, 836, 923, 979
XceI RCATGY 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 993
XspI CTAG 1 cut(s) 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.