Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Forward (+)

22684788 .. 22685798

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCCGGGGATGAAAACCGTAATCTTGAATCAACATGTGAGCTGGAACAAATTGAAGAAAAAGCAATCTACCGAAGAAGAGAATGCAGGTTACATGAAGAGAATTCGGATTATATACAATGATCCTGATGCCACTGACTCTTCGAGTGAAGATGATGAGGATTATGATATTGAGGGAAACCTATTTCAGCATGGTAAGCGCTTTGTTTCGGAGATTTTGGTTGTGGAAACAGAATGTGAATCATCTGCAGGGACCAATGGAGGCAGAATTGGTCATAGTACGGACTTTTATGACTCTAAGAAAAGTAATAGAGTGCTCCCTAAGGGAGTTCGACGCAGAAAATGGGGAAAATATGCAGCGGAGATTCGAGATCCATTTCAAGGAATTCGAAAATGGCTTGGCACTTTTAATACAGCAGAGGAGGCTGCTGCTGCTTATCAGCAAAAGAAGCGTGAGTTTGAGACCATACAGTCACAGCAAAGGACTAAGAGCCACTGTGAAAACATGCCATTATCTGATAAGCATGAGTTTGAGAGTATGCAATTAACGGAGGGAGCCAAGCATGAGCTTCAAAGCGTTCCTTTATCAGAGGAGAGTCAGGATTCATCGTTTTGCCATCCATCACCATCATCTGTGCTTGAAATGTCTGGTTCAGCTGCGCTTTGTATTGGACTCGAAAGGTTGAAAGAAGAATCTGGGGTGGAAGTTTCTGGGGGAGAAGGCACTCTGCAGCAACCAGTTTTTGAAGAAGAGGAATCCATTCCAATGTTGCCACCATTAGATGTCGAACAGTTGAATTTGGGATGCGGGGACAATTACGTGTTTTCTAGCTTGGATCAGTTCTTTGATGGCATGTGTGATATTGTTGATGATGGTATGACAGACACAGTTGATTATCCCGTGTGCAAGGATAAAAAAGGCGAGGCTACGTGTCTTCCCCCTCTTGACTTCAATTTTGGTCAGCAGGATTTCTCTTGGATTGATCACAAACTGGAACACGGTAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

337

Amino Acids

37.81

Weight (kDa)

4.8

Isoelectric Point (pI)

64.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 150	1.7e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	77
AciI	CCGC	2 cut(s)	359, 807
AclWI	GGATC	3 cut(s)	116, 365, 843
AcsI	RAATTY	3 cut(s)	102, 384, 796
AfaI	GTAC	1 cut(s)	280
AfeI	AGCGCT	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	3 cut(s)	34, 819, 929
AgsI	TTSAA	9 cut(s)	28, 55, 380, 572, 641, 685, 746, 796, 952
AluBI	AGCT	4 cut(s)	42, 568, 656, 831
AluI	AGCT	4 cut(s)	42, 568, 656, 831
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	3 cut(s)	116, 365, 843
Aor51HI	AGCGCT	1 cut(s)	200
ApeKI	GCWGC	6 cut(s)	356, 425, 428, 431, 656, 730
ApoI	RAATTY	3 cut(s)	102, 384, 796
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
Asp700I	GAANNNNTTC	1 cut(s)	759
AspLEI	GCGC	2 cut(s)	201, 661
AspS9I	GGNCC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	615
AsuII	TTCGAA	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	252
AxyI	CCTNAGG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	6 cut(s)	368, 412, 415, 418, 643, 742
BccI	CCATC	5 cut(s)	624, 628, 634, 842, 866
BclI	TGATCA	1 cut(s)	982
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	828
BfmI	CTRYAG	2 cut(s)	246, 728
BfoI	RGCGCY	1 cut(s)	202
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 731
BlsI	GCNGC	6 cut(s)	358, 427, 430, 433, 658, 732
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	253, 556
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	2 cut(s)	118, 794
BpiI	GAAGAC	1 cut(s)	926
Bpu14I	TTCGAA	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	6
BsaAI	YACGTR	2 cut(s)	820, 930
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	737, 996
Bse21I	CCTNAGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	3 cut(s)	15, 616, 809
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	737, 996
BseRI	GAGGAG	2 cut(s)	434, 605
BseXI	GCAGC	6 cut(s)	368, 412, 415, 418, 643, 742
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	265, 824
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	2 cut(s)	265, 824
BsmI	GAATGC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	121, 370, 835, 982
BspACI	CCGC	2 cut(s)	359, 807
BspLI	GGNNCC	2 cut(s)	253, 556
BspMAI	CTGCAG	2 cut(s)	250, 732
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	3 cut(s)	116, 365, 843
BspT104I	TTCGAA	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	737, 996
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	4 cut(s)	121, 370, 835, 982
Bst4CI	ACNGT	6 cut(s)	19, 471, 497, 792, 889, 1001
Bst6I	CTCTTC	4 cut(s)	72, 92, 145, 744
BstBAI	YACGTR	2 cut(s)	820, 930
BstBI	TTCGAA	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	297, 321, 486
BstF5I	GGATG	3 cut(s)	15, 616, 809
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	2 cut(s)	201, 661
BstKTI	GATC	4 cut(s)	124, 373, 838, 985
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	121, 370, 835, 982
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 422, 431, 448
BstNSI	RCATGY	3 cut(s)	38, 508, 856
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	2 cut(s)	246, 728
BstV1I	GCAGC	6 cut(s)	368, 412, 415, 418, 643, 742
BstV2I	GAAGAC	1 cut(s)	926
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
Bsu36I	CCTNAGG	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	15, 616, 809
BtsIMutI	CAGTG	2 cut(s)	132, 493
BveI	ACCTGC	1 cut(s)	77
CfoI	GCGC	2 cut(s)	201, 661
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	8 cut(s)	35, 94, 191, 505, 524, 563, 853, 1008
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	3 cut(s)	297, 321, 486
DpnI	GATC	4 cut(s)	123, 372, 837, 984
DpnII	GATC	4 cut(s)	121, 370, 835, 982
DrdI	GACNNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	469
Eam1104I	CTCTTC	4 cut(s)	72, 92, 145, 744
EarI	CTCTTC	4 cut(s)	72, 92, 145, 744
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	252
Eco47III	AGCGCT	1 cut(s)	200
Eco81I	CCTNAGG	1 cut(s)	321
EcoRI	GAATTC	2 cut(s)	102, 384
FaeI	CATG	8 cut(s)	38, 97, 194, 508, 527, 566, 856, 1011
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FaqI	GGGAC	2 cut(s)	265, 824
FatI	CATG	8 cut(s)	34, 93, 190, 504, 523, 562, 852, 1007
FauI	CCCGC	1 cut(s)	800
FbaI	TGATCA	1 cut(s)	982
Fnu4HI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 731
FokI	GGATG	3 cut(s)	22, 603, 816
Fsp4HI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 731
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	2 cut(s)	200, 660
GluI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 731
HaeII	RGCGCY	1 cut(s)	202
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	2 cut(s)	201, 661
Hin1II	CATG	8 cut(s)	38, 97, 194, 508, 527, 566, 856, 1011
Hin6I	GCGC	2 cut(s)	199, 659
HinP1I	GCGC	2 cut(s)	199, 659
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	615
Hpy188I	TCNGA	4 cut(s)	108, 211, 517, 589
Hpy188III	TCNNGA	5 cut(s)	25, 125, 368, 599, 944
Hpy99I	CGWCG	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	713
HpyCH4III	ACNGT	6 cut(s)	19, 471, 497, 792, 889, 1001
HpyCH4IV	ACGT	2 cut(s)	819, 929
HpyCH4V	TGCA	6 cut(s)	86, 248, 356, 541, 730, 906
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 422, 431, 448
HpyF3I	CTNAG	3 cut(s)	297, 321, 486
HpySE526I	ACGT	2 cut(s)	819, 929
Hsp92II	CATG	8 cut(s)	38, 97, 194, 508, 527, 566, 856, 1011
HspAI	GCGC	2 cut(s)	199, 659
Ksp22I	TGATCA	1 cut(s)	982
Kzo9I	GATC	4 cut(s)	121, 370, 835, 982
LmnI	GCTCC	2 cut(s)	321, 554
Lsp1109I	GCAGC	6 cut(s)	368, 412, 415, 418, 643, 742
LweI	GCATC	2 cut(s)	118, 794
MaeI	CTAG	1 cut(s)	828
MaeII	ACGT	2 cut(s)	819, 929
MaeIII	GTNAC	2 cut(s)	89, 471
MalI	GATC	4 cut(s)	123, 372, 837, 984
MboI	GATC	4 cut(s)	121, 370, 835, 982
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	8 cut(s)	50, 102, 267, 384, 542, 796, 814, 952
MlyI	GAGTC	4 cut(s)	131, 287, 604, 666
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	2 cut(s)	408, 545
MslI	CAYNNNNRTG	1 cut(s)	764
MspA1I	CMGCKG	2 cut(s)	359, 656
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	4 cut(s)	196, 422, 431, 448
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	121, 370, 835, 982
NlaIII	CATG	8 cut(s)	38, 97, 194, 508, 527, 566, 856, 1011
NlaIV	GGNNCC	2 cut(s)	253, 556
NmuCI	GTSAC	1 cut(s)	471
NspI	RCATGY	3 cut(s)	38, 508, 856
NspV	TTCGAA	1 cut(s)	388
PciI	ACATGT	1 cut(s)	34
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	6 cut(s)	28, 239, 364, 602, 692, 755
PkrI	GCNGC	6 cut(s)	358, 427, 430, 433, 658, 732
PleI	GAGTC	4 cut(s)	131, 287, 603, 666
PpsI	GAGTC	4 cut(s)	131, 287, 603, 666
Ppu21I	YACGTR	2 cut(s)	820, 930
PscI	ACATGT	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	253, 556
PspPI	GGNCC	1 cut(s)	252
PstI	CTGCAG	2 cut(s)	250, 732
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	2 cut(s)	408, 545
SatI	GCNGC	6 cut(s)	357, 426, 429, 432, 657, 731
Sau3AI	GATC	4 cut(s)	121, 370, 835, 982
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	4 cut(s)	131, 287, 604, 666
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	9 cut(s)	44, 91, 183, 570, 658, 683, 822, 833, 932
SfaNI	GCATC	2 cut(s)	118, 794
SfcI	CTRYAG	2 cut(s)	246, 728
SfuI	TTCGAA	1 cut(s)	388
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	764
Sse9I	AATT	8 cut(s)	50, 102, 267, 384, 542, 796, 814, 952
SsiI	CCGC	2 cut(s)	359, 807
SspMI	CTAG	1 cut(s)	828
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	6 cut(s)	19, 471, 497, 792, 889, 1001
TaiI	ACGT	2 cut(s)	822, 932
TaqI	TCGA	6 cut(s)	143, 331, 367, 388, 675, 786
TasI	AATT	8 cut(s)	50, 102, 267, 384, 542, 796, 814, 952
TfiI	GAWTC	6 cut(s)	28, 239, 364, 602, 692, 755
Tru1I	TTAA	2 cut(s)	408, 545
Tru9I	TTAA	2 cut(s)	408, 545
TscAI	CASTG	2 cut(s)	139, 500
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	6 cut(s)	356, 425, 428, 431, 656, 730
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	3 cut(s)	26, 110, 594
TspGWI	ACGGA	2 cut(s)	296, 563
TspRI	CASTG	2 cut(s)	139, 500
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	3 cut(s)	102, 384, 796
XceI	RCATGY	3 cut(s)	38, 508, 856
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.