Rh1CG271800

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002102
Physical Location & Seq
Reverse (-)
53852361 .. 53856413
4053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG271800.1

Sequence Viewer

Length: 939 bp
ATGAAGCAACCAAGCAAAGACCAGAATACAAGTTCCACCAAGAGAGTTCGCATCATATATGATGATCCCTATGCCACTGATTGTTCGAGTGAAGATGATGAGGAATATAATATTAAGAAAAGTAGATCAGTGCGTAATAAGCACATTGTTTCAGAGATTTTGGTGGGGGGTACCCCATGTGAATCATCTGCAAAGACTTCATTCAATTGCAATACCTATGGCACCAAGTTTGGTACTAGTATGGATTTCGATGACAGTAAGGAAACTCGAAGATGTGCTACCAAATATAAGGGAGTTCGGCGTAGAAAATGGGGAACGTATGTAGCAGAAATTCGAGATCCATTTCGAAAGACTAGATTATGGCTTGGCACTTATACTACTGCAGAGGAGGCTGCTATGGCTTATCAGAAAAAGAGGGTCGAGTTTGATAACATAAAGTTATTGCAAAAGACTAAGAGTAATCTTGAAAAGTTGCAATTATCAGATAAGGCCAAGGGAATGTGCGAGACCAAGCATAATTATCAAGGCAATCATTTATCAGAGAGTCAGGATTTATCAGCTGATGCTGCTATTGAAACTGTTTCATATGAAGACACCAAAAGTGTGTTTTCTCATCCATCACCTTCATCTGTGCTTGATATTTCTACTACAGCTGCACAAAATATTGGACTCAGAAAGTCAGATGAAGAGTCCACTTTGGAGGTTTCTGGACGAGAAGGCCCTGTGCCACTAGATTCTGAAGAAGAGCAATACAATTTGAAGGCTCCTGAAAAGCCAACATTGTTACCACCCGTACATTTGAATATTGGGTTTGTGGATAATTACATGCTTGAGTGTTTGGATCGGTATTTTGATGGTATGACTGACATAGTTGATCATCCTGCGTGTGATGATGTAAATGGTGAGGTTATCAATCTTCCCTCTCTTGACTTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

312

Amino Acids

35.2

Weight (kDa)

5.27

Isoelectric Point (pI)

61.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 94 - 137 4.6e-10 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 2 cut(s) 170, 221
AclWI GGATC 3 cut(s) 59, 332, 849
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 759
AfaI GTAC 3 cut(s) 172, 235, 795
AgsI TTSAA 5 cut(s) 205, 467, 575, 760, 802
AhlI ACTAGT 1 cut(s) 236
AluBI AGCT 2 cut(s) 560, 653
AluI AGCT 2 cut(s) 560, 653
Alw26I GTCTC 1 cut(s) 500
AlwI GGATC 3 cut(s) 59, 332, 849
AoxI GGCC 2 cut(s) 489, 718
ApeKI GCWGC 3 cut(s) 392, 566, 653
ApoI RAATTY 1 cut(s) 330
Asp718I GGTACC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 719
AsuHPI GGTGA 2 cut(s) 612, 914
AsuII TTCGAA 1 cut(s) 346
BanI GGYRCC 2 cut(s) 170, 221
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
BbsI GAAGAC 1 cut(s) 597
BbvI GCAGC 3 cut(s) 379, 553, 640
BccI CCATC 2 cut(s) 625, 848
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 1 cut(s) 500
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 3 cut(s) 237, 354, 731
BfmI CTRYAG 2 cut(s) 381, 648
BisI GCNGC 3 cut(s) 393, 567, 654
BlsI GCNGC 3 cut(s) 394, 568, 655
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 3 cut(s) 172, 223, 765
BmsI GCATC 2 cut(s) 60, 553
BpiI GAAGAC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 851
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 2 cut(s) 613, 877
BseMII CTCAG 1 cut(s) 685
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 3 cut(s) 379, 553, 640
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 2 cut(s) 491, 720
BshNI GGYRCC 2 cut(s) 170, 221
BsmAI GTCTC 1 cut(s) 500
BsnI GGCC 2 cut(s) 491, 720
Bso31I GGTCTC 1 cut(s) 500
Bsp119I TTCGAA 1 cut(s) 346
Bsp143I GATC 5 cut(s) 64, 125, 337, 841, 874
BspANI GGCC 2 cut(s) 491, 720
BspCNI CTCAG 1 cut(s) 684
BspLI GGNNCC 3 cut(s) 172, 223, 765
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 3 cut(s) 59, 332, 849
BspQI GCTCTTC 1 cut(s) 738
BspT104I TTCGAA 1 cut(s) 346
BspT107I GGYRCC 2 cut(s) 170, 221
BspTNI GGTCTC 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 5 cut(s) 64, 125, 337, 841, 874
BssT1I CCWWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 257, 580
Bst6I CTCTTC 2 cut(s) 681, 738
BstBI TTCGAA 1 cut(s) 346
BstDEI CTNAG 3 cut(s) 453, 671, 931
BstF5I GGATG 2 cut(s) 613, 877
BstKTI GATC 5 cut(s) 67, 128, 340, 844, 877
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 5 cut(s) 64, 125, 337, 841, 874
BstMWI GCNNNNNNNGC 4 cut(s) 139, 389, 398, 566
BstNSI RCATGY 1 cut(s) 829
BstSFI CTRYAG 2 cut(s) 381, 648
BstV1I GCAGC 3 cut(s) 379, 553, 640
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 2 cut(s) 491, 720
BtsCI GGATG 2 cut(s) 613, 877
BtsIMutI CAGTG 2 cut(s) 75, 135
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 3 cut(s) 171, 234, 794
CviAII CATG 2 cut(s) 177, 826
CviJI RGCY 9 cut(s) 364, 392, 401, 491, 560, 653, 720, 764, 775
CviKI_1 RGCY 9 cut(s) 364, 392, 401, 491, 560, 653, 720, 764, 775
CviQI GTAC 3 cut(s) 171, 234, 794
DdeI CTNAG 3 cut(s) 453, 671, 931
DpnI GATC 5 cut(s) 66, 127, 339, 843, 876
DpnII GATC 5 cut(s) 64, 125, 337, 841, 874
Eam1104I CTCTTC 2 cut(s) 681, 738
EarI CTCTTC 2 cut(s) 681, 738
Eco130I CCWWGG 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 500
Eco57I CTGAAG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 2 cut(s) 180, 829
FatI CATG 2 cut(s) 176, 825
FauNDI CATATG 1 cut(s) 586
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 3 cut(s) 393, 567, 654
FokI GGATG 2 cut(s) 600, 864
Fsp4HI GCNGC 3 cut(s) 393, 567, 654
FspBI CTAG 3 cut(s) 237, 354, 731
GluI GCNGC 3 cut(s) 393, 567, 654
HaeIII GGCC 2 cut(s) 491, 720
Hin1II CATG 2 cut(s) 180, 829
HinfI GANTC 5 cut(s) 182, 544, 669, 689, 734
HphI GGTGA 2 cut(s) 612, 914
Hpy166II GTNNAC 1 cut(s) 693
Hpy188I TCNGA 7 cut(s) 154, 408, 484, 541, 674, 682, 739
Hpy188III TCNNGA 6 cut(s) 335, 464, 548, 708, 767, 926
Hpy8I GTNNAC 1 cut(s) 693
HpyAV CCTTC 3 cut(s) 633, 710, 754
HpyCH4III ACNGT 2 cut(s) 257, 580
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 6 cut(s) 191, 210, 383, 445, 475, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 389, 398, 566
HpyF3I CTNAG 3 cut(s) 453, 671, 931
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 2 cut(s) 180, 829
KpnI GGTACC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 5 cut(s) 64, 125, 337, 841, 874
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 1 cut(s) 769
LpnPI CCDG 6 cut(s) 35, 533, 693, 735, 780, 894
Lsp1109I GCAGC 3 cut(s) 379, 553, 640
LweI GCATC 2 cut(s) 60, 553
MaeI CTAG 3 cut(s) 237, 354, 731
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 783
MalI GATC 5 cut(s) 66, 127, 339, 843, 876
MboI GATC 5 cut(s) 64, 125, 337, 841, 874
MboII GAAGA 7 cut(s) 104, 282, 602, 698, 752, 755, 908
MfeI CAATTG 1 cut(s) 205
MflI RGATCY 1 cut(s) 337
MluCI AATT 6 cut(s) 205, 330, 476, 517, 754, 820
MlyI GAGTC 3 cut(s) 553, 663, 698
MnlI CCTC 7 cut(s) 94, 379, 382, 408, 694, 898, 931
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 2 cut(s) 560, 653
MunI CAATTG 1 cut(s) 205
MwoI GCNNNNNNNGC 4 cut(s) 139, 389, 398, 566
NdeI CATATG 1 cut(s) 586
NdeII GATC 5 cut(s) 64, 125, 337, 841, 874
NlaIII CATG 2 cut(s) 180, 829
NlaIV GGNNCC 3 cut(s) 172, 223, 765
NspI RCATGY 1 cut(s) 829
NspV TTCGAA 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 738
PfeI GAWTC 2 cut(s) 182, 734
PkrI GCNGC 3 cut(s) 394, 568, 655
PleI GAGTC 3 cut(s) 552, 663, 697
PpsI GAGTC 3 cut(s) 552, 663, 697
PspN4I GGNNCC 3 cut(s) 172, 223, 765
PspPI GGNCC 1 cut(s) 719
PstI CTGCAG 1 cut(s) 385
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 2 cut(s) 560, 653
RsaI GTAC 3 cut(s) 172, 235, 795
RsaNI GTAC 3 cut(s) 171, 234, 794
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 393, 567, 654
Sau3AI GATC 5 cut(s) 64, 125, 337, 841, 874
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 3 cut(s) 553, 663, 698
SetI ASST 7 cut(s) 218, 320, 562, 625, 655, 705, 909
SfaNI GCATC 2 cut(s) 60, 553
SfcI CTRYAG 2 cut(s) 381, 648
SfuI TTCGAA 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 6 cut(s) 205, 330, 476, 517, 754, 820
SspI AATATT 3 cut(s) 112, 664, 805
SspMI CTAG 3 cut(s) 237, 354, 731
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 257, 580
TaiI ACGT 1 cut(s) 320
TaqI TCGA 6 cut(s) 86, 249, 268, 334, 346, 420
TasI AATT 6 cut(s) 205, 330, 476, 517, 754, 820
TfiI GAWTC 2 cut(s) 182, 734
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 82, 135
TseI GCWGC 3 cut(s) 392, 566, 653
TspDTI ATGAA 6 cut(s) 17, 189, 573, 603, 615, 699
TspRI CASTG 2 cut(s) 82, 135
XapI RAATTY 1 cut(s) 330
XceI RCATGY 1 cut(s) 829
XspI CTAG 3 cut(s) 237, 354, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.