Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000368.1

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Reverse (-)

206550 .. 208996

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000368.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgaagcaaccaagcaaagaccagaatacaagttccaccaagagaattcgcatcatatatgatgatccctatgccactgattgttcgagtgaagatgatgaggaatataatattaagaaaagtagatcagtgcgtaataagcacattgtttcagagattttggtggggggtaccccatgtgaatcatctgcaaagacttcattcaattgcaatacctatggcaccaagtttggtactagtatggatttcgatgacagtaaggaaactcgaagatgtgctaccaaatataagggagttcggcgtagaaaatggggaacgtatgtagcagaaattcgagatccatttcgaaagactagattatggcttggcacttatactactgcagaggaggctgctatggcttatcagaaaaagagggtcgagtttgataacataaagttattgcaaaagactaagagtaatcttgaaaagttgcaattatcagataaggccaagggaatgtgtgagaccaagcataattatcaaggcaatcatttatcagagagtcaggatttatcagctgatgctgctattgaaactgtttcatatgaagacaccaaaagtgtgttttctcatccatcaccttcatctgtgcttgatatttctactacagctgcacaaaatattggactcagaaagtcagatgaagagtccactttggaggtttctggacgagaaggccctgtgccactagattctgaagaagagcaatacaatttgaaggctcctgaaaagccaacattgttaccacccgtacatttgaatattgggtttgtggataattacatgcttgagtgtttggatcggtattttgatggtatgactgacatagttgatcatcctgcgtgtgatgatgtaaatggactcttccttccagctgtagtgaggccaatgttagattcctttgaagcttctaagcaagtccctcagcctgctttaagtgatgtggttgcaggtatgacgggtaaaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

337

Amino Acids

37.82

Weight (kDa)

5.67

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	983
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	2 cut(s)	170, 221
AclWI	GGATC	3 cut(s)	59, 332, 849
AcsI	RAATTY	2 cut(s)	45, 330
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	3 cut(s)	172, 235, 795
AgsI	TTSAA	6 cut(s)	205, 467, 575, 760, 802, 947
AhlI	ACTAGT	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	922, 954
AluBI	AGCT	4 cut(s)	560, 653, 917, 950
AluI	AGCT	4 cut(s)	560, 653, 917, 950
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	3 cut(s)	59, 332, 849
AoxI	GGCC	3 cut(s)	489, 718, 926
ApeKI	GCWGC	3 cut(s)	392, 566, 653
ApoI	RAATTY	2 cut(s)	45, 330
Asp718I	GGTACC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	719
AsuHPI	GGTGA	1 cut(s)	612
AsuII	TTCGAA	1 cut(s)	346
BanI	GGYRCC	2 cut(s)	170, 221
BarI	GAAGNNNNNNTAC	2 cut(s)	262, 294
BbsI	GAAGAC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	966
BbvI	GCAGC	3 cut(s)	379, 553, 640
BccI	CCATC	2 cut(s)	625, 848
BclI	TGATCA	1 cut(s)	874
BcoDI	GTCTC	1 cut(s)	500
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	3 cut(s)	237, 354, 731
BfmI	CTRYAG	3 cut(s)	381, 648, 918
BfuAI	ACCTGC	1 cut(s)	983
BisI	GCNGC	3 cut(s)	393, 567, 654
BlsI	GCNGC	3 cut(s)	394, 568, 655
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	3 cut(s)	172, 223, 765
BmsI	GCATC	2 cut(s)	60, 553
BpiI	GAAGAC	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	966
Bpu14I	TTCGAA	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	851
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	613, 877
BseMII	CTCAG	2 cut(s)	685, 980
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	3 cut(s)	379, 553, 640
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	3 cut(s)	491, 720, 928
BshNI	GGYRCC	2 cut(s)	170, 221
BslFI	GGGAC	1 cut(s)	947
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	947
BsnI	GGCC	3 cut(s)	491, 720, 928
Bso31I	GGTCTC	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	346
Bsp143I	GATC	5 cut(s)	64, 125, 337, 841, 874
BspANI	GGCC	3 cut(s)	491, 720, 928
BspCNI	CTCAG	2 cut(s)	684, 979
BspLI	GGNNCC	3 cut(s)	172, 223, 765
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	983
BspPI	GGATC	3 cut(s)	59, 332, 849
BspQI	GCTCTTC	1 cut(s)	738
BspT104I	TTCGAA	1 cut(s)	346
BspT107I	GGYRCC	2 cut(s)	170, 221
BspTNI	GGTCTC	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	5 cut(s)	64, 125, 337, 841, 874
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	257, 580
Bst6I	CTCTTC	3 cut(s)	681, 738, 911
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	972
BstDEI	CTNAG	4 cut(s)	453, 671, 954, 966
BstF5I	GGATG	2 cut(s)	613, 877
BstKTI	GATC	5 cut(s)	67, 128, 340, 844, 877
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	5 cut(s)	64, 125, 337, 841, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 389, 398, 566
BstNSI	RCATGY	1 cut(s)	829
BstSFI	CTRYAG	3 cut(s)	381, 648, 918
BstV1I	GCAGC	3 cut(s)	379, 553, 640
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	3 cut(s)	491, 720, 928
BtsCI	GGATG	2 cut(s)	613, 877
BtsIMutI	CAGTG	2 cut(s)	75, 135
BveI	ACCTGC	1 cut(s)	983
Cac8I	GCNNGC	1 cut(s)	972
Cfr13I	GGNCC	1 cut(s)	719
Csp6I	GTAC	3 cut(s)	171, 234, 794
CviAII	CATG	2 cut(s)	177, 826
CviQI	GTAC	3 cut(s)	171, 234, 794
DdeI	CTNAG	4 cut(s)	453, 671, 954, 966
DpnI	GATC	5 cut(s)	66, 127, 339, 843, 876
DpnII	GATC	5 cut(s)	64, 125, 337, 841, 874
Eam1104I	CTCTTC	3 cut(s)	681, 738, 911
EarI	CTCTTC	3 cut(s)	681, 738, 911
Eco130I	CCWWGG	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	180, 829
FaqI	GGGAC	1 cut(s)	947
FatI	CATG	2 cut(s)	176, 825
FauNDI	CATATG	1 cut(s)	586
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	3 cut(s)	393, 567, 654
FokI	GGATG	2 cut(s)	600, 864
Fsp4HI	GCNGC	3 cut(s)	393, 567, 654
FspBI	CTAG	3 cut(s)	237, 354, 731
GluI	GCNGC	3 cut(s)	393, 567, 654
HaeIII	GGCC	3 cut(s)	491, 720, 928
Hin1II	CATG	2 cut(s)	180, 829
HindIII	AAGCTT	1 cut(s)	948
HinfI	GANTC	7 cut(s)	182, 544, 669, 689, 734, 903, 938
HphI	GGTGA	1 cut(s)	612
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	7 cut(s)	154, 408, 484, 541, 674, 682, 739
Hpy188III	TCNNGA	5 cut(s)	335, 464, 548, 708, 767
Hpy8I	GTNNAC	1 cut(s)	693
HpyAV	CCTTC	4 cut(s)	633, 710, 754, 920
HpyCH4III	ACNGT	2 cut(s)	257, 580
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	7 cut(s)	191, 210, 383, 445, 475, 656, 992
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 389, 398, 566
HpyF3I	CTNAG	4 cut(s)	453, 671, 954, 966
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	180, 829
KpnI	GGTACC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	5 cut(s)	64, 125, 337, 841, 874
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	1 cut(s)	769
LpnPI	CCDG	9 cut(s)	35, 533, 693, 735, 780, 894, 927, 978, 984
Lsp1109I	GCAGC	3 cut(s)	379, 553, 640
LweI	GCATC	2 cut(s)	60, 553
MaeI	CTAG	3 cut(s)	237, 354, 731
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	783
MalI	GATC	5 cut(s)	66, 127, 339, 843, 876
MboI	GATC	5 cut(s)	64, 125, 337, 841, 874
MboII	GAAGA	7 cut(s)	104, 282, 602, 698, 752, 755, 898
MfeI	CAATTG	1 cut(s)	205
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	7 cut(s)	45, 205, 330, 476, 517, 754, 820
MlyI	GAGTC	4 cut(s)	553, 663, 698, 897
MnlI	CCTC	7 cut(s)	94, 379, 382, 408, 694, 918, 975
MseI	TTAA	2 cut(s)	114, 977
MspA1I	CMGCKG	3 cut(s)	560, 653, 917
MunI	CAATTG	1 cut(s)	205
MwoI	GCNNNNNNNGC	4 cut(s)	139, 389, 398, 566
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	5 cut(s)	64, 125, 337, 841, 874
NlaIII	CATG	2 cut(s)	180, 829
NlaIV	GGNNCC	3 cut(s)	172, 223, 765
NspI	RCATGY	1 cut(s)	829
NspV	TTCGAA	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	738
PfeI	GAWTC	3 cut(s)	182, 734, 938
PkrI	GCNGC	3 cut(s)	394, 568, 655
PleI	GAGTC	4 cut(s)	552, 663, 697, 897
PpsI	GAGTC	4 cut(s)	552, 663, 697, 897
PspN4I	GGNNCC	3 cut(s)	172, 223, 765
PspPI	GGNCC	1 cut(s)	719
PstI	CTGCAG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	3 cut(s)	560, 653, 917
RsaI	GTAC	3 cut(s)	172, 235, 795
RsaNI	GTAC	3 cut(s)	171, 234, 794
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	2 cut(s)	114, 977
SatI	GCNGC	3 cut(s)	393, 567, 654
Sau3AI	GATC	5 cut(s)	64, 125, 337, 841, 874
Sau96I	GGNCC	1 cut(s)	719
SchI	GAGTC	4 cut(s)	553, 663, 698, 897
SetI	ASST	9 cut(s)	218, 320, 562, 625, 655, 705, 919, 952, 997
SfaNI	GCATC	2 cut(s)	60, 553
SfcI	CTRYAG	3 cut(s)	381, 648, 918
SfuI	TTCGAA	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	7 cut(s)	45, 205, 330, 476, 517, 754, 820
SspI	AATATT	3 cut(s)	112, 664, 805
SspMI	CTAG	3 cut(s)	237, 354, 731
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	257, 580
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	6 cut(s)	86, 249, 268, 334, 346, 420
TasI	AATT	7 cut(s)	45, 205, 330, 476, 517, 754, 820
TfiI	GAWTC	3 cut(s)	182, 734, 938
Tru1I	TTAA	2 cut(s)	114, 977
Tru9I	TTAA	2 cut(s)	114, 977
TscAI	CASTG	2 cut(s)	82, 135
TseI	GCWGC	3 cut(s)	392, 566, 653
TspDTI	ATGAA	6 cut(s)	17, 189, 573, 603, 615, 699
TspRI	CASTG	2 cut(s)	82, 135
XapI	RAATTY	2 cut(s)	45, 330
XceI	RCATGY	1 cut(s)	829
XspI	CTAG	3 cut(s)	237, 354, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.