Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Reverse (-)

38714243 .. 38718449

Gene Structure 4207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0275000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTCAACGGTTTCATCCCCAACAATGCCGACCTCCAGTTATCTCCGACCATGGTCCTACTGGTTTCCACAAACTCGCATTTTCGGCTTTCAGAAATGACCACCGTGCTGGCGGTGCCGCGCTCCTCCATGTCGAGATTCTGGTGCTCCAAGAGCTGCCGCACGCTGTGTGTTTCTCTGCACAGGTTGAAATGCCTACTGGAACGCAGCGCTGGGGATTCAGTTACTCTTTATGGTGATGAACAAGCTGTTGATAGGATTTTCTGTGAAATTGGGGATGATGATGGCATCAAATACTCCTCTACACTGCCAGTGATTTCATGGTGGGATCAGATTCAGATGGACCTGGGTTTCGTAGGATATGAATATCCAATGAGGCTTGGCTTGTCTTCAGAGATTTTTTGTTCCGTTATCACTGAATTGGATTCTCATGGGTTTAAAGTTCATGCCAAAGTATCAGAAACCCAAGTTGTGTTCCGGGTAGTGAATAACAAGACTGTCTTCAAAAGAAAGCCCGGGATTTGCGAGATTGAGAGTGTTGGTGATAGATATCCGTTTGAATTAAAGTTTGATCTCCAGCACAAGAGTGCGTTTCTCAATGCTGCTAGACTGTCAAAGATGGTATGGATACTTAAGTCTGTGGAGTTGATCACTGTGCTCAGCTTCCCTATTCTTGGCCTGGGTAACCTCATGTTTACGGCACCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

26.64

Weight (kDa)

6.94

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	115, 700
AccII	CGCG	1 cut(s)	121
AciI	CCGC	3 cut(s)	113, 119, 160
AclWI	GGATC	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	168
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	674
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	4 cut(s)	7, 190, 505, 560
AjnI	CCWGG	2 cut(s)	345, 678
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	3 cut(s)	156, 248, 663
AluI	AGCT	3 cut(s)	156, 248, 663
Alw21I	GWGCWC	2 cut(s)	149, 660
AlwI	GGATC	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	515
Aor51HI	AGCGCT	1 cut(s)	211
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	3 cut(s)	156, 207, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspLEI	GCGC	2 cut(s)	123, 212
AspS9I	GGNCC	2 cut(s)	55, 343
AsuC2I	CCSGG	3 cut(s)	479, 516, 517
AsuHPI	GGTGA	2 cut(s)	248, 554
AvaI	CYCGRG	1 cut(s)	515
AvaII	GGWCC	2 cut(s)	55, 343
BaeI	ACNNNNGTAYC	2 cut(s)	620, 653
BanI	GGYRCC	2 cut(s)	115, 700
BbsI	GAAGAC	2 cut(s)	381, 493
Bbv12I	GWGCWC	2 cut(s)	149, 660
BbvI	GCAGC	3 cut(s)	143, 219, 589
BccI	CCATC	3 cut(s)	278, 334, 613
BciT130I	CCWGG	2 cut(s)	347, 680
BciVI	GTATCC	1 cut(s)	621
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	3 cut(s)	479, 516, 517
BfaI	CTAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	621
BisI	GCNGC	5 cut(s)	119, 157, 160, 208, 603
BlpI	GCTNAGC	1 cut(s)	659
BlsI	GCNGC	5 cut(s)	120, 158, 161, 209, 604
Bme1390I	CCNGG	5 cut(s)	347, 479, 516, 517, 680
Bme18I	GGWCC	2 cut(s)	55, 343
BmeT110I	CYCGRG	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	55, 343
BmiI	GGNNCC	2 cut(s)	117, 702
BmrFI	CCNGG	5 cut(s)	347, 479, 516, 517, 680
BmsI	GCATC	1 cut(s)	297
BoxI	GACNNNNGTC	1 cut(s)	53
BpiI	GAAGAC	2 cut(s)	381, 493
BpmI	CTGGAG	2 cut(s)	20, 560
Bpu1102I	GCTNAGC	1 cut(s)	659
BpuMI	CCSGG	3 cut(s)	479, 516, 517
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	4 cut(s)	51, 346, 515, 679
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
Bse1I	ACTGG	4 cut(s)	37, 66, 204, 311
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	347, 680
BseDI	CCNNGG	4 cut(s)	51, 346, 515, 679
BseGI	GGATG	2 cut(s)	15, 283
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseMII	CTCAG	1 cut(s)	673
BseNI	ACTGG	4 cut(s)	37, 66, 204, 311
BseRI	GAGGAG	2 cut(s)	115, 289
BseXI	GCAGC	3 cut(s)	143, 219, 589
BseYI	CCCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	678
BshNI	GGYRCC	2 cut(s)	115, 700
BsiHKAI	GWGCWC	2 cut(s)	149, 660
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	2 cut(s)	478, 516
BslI	CCNNNNNNNGG	1 cut(s)	674
BsnI	GGCC	1 cut(s)	678
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	149, 660
Bsp143I	GATC	3 cut(s)	328, 571, 648
Bsp1720I	GCTNAGC	1 cut(s)	659
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	3 cut(s)	113, 119, 160
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	1 cut(s)	672
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	117, 702
BspPI	GGATC	1 cut(s)	336
BspT107I	GGYRCC	2 cut(s)	115, 700
BspTI	CTTAAG	1 cut(s)	632
BsrI	ACTGG	4 cut(s)	37, 66, 204, 311
BssECI	CCNNGG	4 cut(s)	51, 346, 515, 679
BssMI	GATC	3 cut(s)	328, 571, 648
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	347, 680
Bst4CI	ACNGT	5 cut(s)	11, 106, 499, 612, 655
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	111, 164
BstDEI	CTNAG	1 cut(s)	659
BstDSI	CCRYGG	1 cut(s)	51
BstEII	GGTNACC	1 cut(s)	683
BstF5I	GGATG	2 cut(s)	15, 283
BstFNI	CGCG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	123, 212
BstKTI	GATC	3 cut(s)	331, 574, 651
BstMBI	GATC	3 cut(s)	328, 571, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 115, 153
BstNI	CCWGG	2 cut(s)	347, 680
BstPAI	GACNNNNGTC	1 cut(s)	53
BstPI	GGTNACC	1 cut(s)	683
BstSCI	CCNGG	5 cut(s)	345, 477, 514, 515, 678
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	143, 219, 589
BstV2I	GAAGAC	2 cut(s)	381, 493
BstXI	CCANNNNNNTGG	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	678
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	15, 283
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	4 cut(s)	305, 318, 414, 651
Cac8I	GCNNGC	2 cut(s)	111, 164
CfoI	GCGC	2 cut(s)	123, 212
Cfr13I	GGNCC	2 cut(s)	55, 343
Cfr9I	CCCGGG	1 cut(s)	515
CviAII	CATG	6 cut(s)	52, 130, 321, 431, 446, 691
CviJI	RGCY	8 cut(s)	88, 156, 248, 379, 384, 514, 663, 678
CviKI_1	RGCY	8 cut(s)	88, 156, 248, 379, 384, 514, 663, 678
DdeI	CTNAG	1 cut(s)	659
DpnI	GATC	3 cut(s)	330, 573, 650
DpnII	GATC	3 cut(s)	328, 571, 648
DraI	TTTAAA	1 cut(s)	439
DraIII	CACNNNGTG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	551
Eco47I	GGWCC	2 cut(s)	55, 343
Eco47III	AGCGCT	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	683
EcoO65I	GGTNACC	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	345, 678
EcoRV	GATATC	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	6 cut(s)	55, 133, 324, 434, 449, 694
FaiI	YATR	9 cut(s)	53, 131, 234, 322, 363, 432, 447, 625, 692
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	6 cut(s)	51, 129, 320, 430, 445, 690
FbaI	TGATCA	1 cut(s)	648
Fnu4HI	GCNGC	5 cut(s)	119, 157, 160, 208, 603
FokI	GGATG	2 cut(s)	2, 290
Fsp4HI	GCNGC	5 cut(s)	119, 157, 160, 208, 603
FspBI	CTAG	1 cut(s)	606
GlaI	GCGC	2 cut(s)	122, 211
GluI	GCNGC	5 cut(s)	119, 157, 160, 208, 603
GsaI	CCCAGC	1 cut(s)	216
GsuI	CTGGAG	2 cut(s)	20, 560
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	2 cut(s)	478, 516
HhaI	GCGC	2 cut(s)	123, 212
Hin1II	CATG	6 cut(s)	55, 133, 324, 434, 449, 694
Hin6I	GCGC	2 cut(s)	121, 210
HinP1I	GCGC	2 cut(s)	121, 210
HinfI	GANTC	4 cut(s)	138, 218, 334, 425
HpaII	CCGG	2 cut(s)	478, 516
HphI	GGTGA	2 cut(s)	248, 554
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	6 cut(s)	48, 94, 333, 339, 394, 460
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	1 cut(s)	696
HpyCH4III	ACNGT	5 cut(s)	11, 106, 499, 612, 655
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 115, 153
HpyF3I	CTNAG	1 cut(s)	659
Hsp92II	CATG	6 cut(s)	55, 133, 324, 434, 449, 694
HspAI	GCGC	2 cut(s)	121, 210
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	3 cut(s)	328, 571, 648
LmnI	GCTCC	2 cut(s)	128, 152
Lsp1109I	GCAGC	3 cut(s)	143, 219, 589
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	606
MaeIII	GTNAC	2 cut(s)	223, 683
MalI	GATC	3 cut(s)	330, 573, 650
MboI	GATC	3 cut(s)	328, 571, 648
MboII	GAAGA	2 cut(s)	381, 493
MhlI	GDGCHC	2 cut(s)	149, 660
MluCI	AATT	4 cut(s)	270, 419, 560, 706
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	44, 136, 310, 369, 698
MseI	TTAA	3 cut(s)	438, 563, 633
MslI	CAYNNNNRTG	1 cut(s)	585
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	2 cut(s)	478, 516
MspR9I	CCNGG	5 cut(s)	347, 479, 516, 517, 680
MvaI	CCWGG	2 cut(s)	347, 680
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	3 cut(s)	85, 115, 153
NciI	CCSGG	3 cut(s)	479, 516, 517
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	3 cut(s)	328, 571, 648
NlaIII	CATG	6 cut(s)	55, 133, 324, 434, 449, 694
NlaIV	GGNNCC	2 cut(s)	117, 702
OliI	CACNNNNGTG	1 cut(s)	585
PfeI	GAWTC	4 cut(s)	138, 218, 334, 425
PkrI	GCNGC	5 cut(s)	120, 158, 161, 209, 604
PshAI	GACNNNNGTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	345, 678
PspEI	GGTNACC	1 cut(s)	683
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	2 cut(s)	345, 678
PspN4I	GGNNCC	2 cut(s)	117, 702
PspPI	GGNCC	2 cut(s)	55, 343
RseI	CAYNNNNRTG	1 cut(s)	585
SaqAI	TTAA	3 cut(s)	438, 563, 633
SatI	GCNGC	5 cut(s)	119, 157, 160, 208, 603
Sau3AI	GATC	3 cut(s)	328, 571, 648
Sau96I	GGNCC	2 cut(s)	55, 343
ScrFI	CCNGG	5 cut(s)	347, 479, 516, 517, 680
SduI	GDGCHC	2 cut(s)	149, 660
SetI	ASST	7 cut(s)	36, 158, 188, 250, 348, 665, 690
SfaNI	GCATC	1 cut(s)	297
SinI	GGWCC	2 cut(s)	55, 343
SmaI	CCCGGG	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	4 cut(s)	270, 419, 560, 706
SsiI	CCGC	3 cut(s)	113, 119, 160
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	5 cut(s)	345, 477, 514, 515, 678
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	5 cut(s)	11, 106, 499, 612, 655
TaqI	TCGA	1 cut(s)	134
TasI	AATT	4 cut(s)	270, 419, 560, 706
TauI	GCSGC	2 cut(s)	121, 162
TfiI	GAWTC	4 cut(s)	138, 218, 334, 425
Tru1I	TTAA	3 cut(s)	438, 563, 633
Tru9I	TTAA	3 cut(s)	438, 563, 633
TscAI	CASTG	4 cut(s)	312, 318, 421, 658
TseI	GCWGC	3 cut(s)	156, 207, 602
TspDTI	ATGAA	5 cut(s)	4, 255, 309, 378, 434
TspGWI	ACGGA	2 cut(s)	397, 543
TspMI	CCCGGG	1 cut(s)	515
TspRI	CASTG	4 cut(s)	312, 318, 421, 658
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	2 cut(s)	55, 343
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 318
XmaI	CCCGGG	1 cut(s)	515
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.