Rorug06G0467900

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002102
Physical Location & Seq
Reverse (-)
59223662 .. 59226458
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0467900.1

Sequence Viewer

Length: 1326 bp
ATGGAGATGCCTATCCACGGATCTGCTTCTCTTCCAAATAATTTCATCAAGAGAGAAAGATCATTCCTTCAGTCTCCCACTTATGGAAACCTCGTCACTGTTCTTAGCATTGATGGAGGTGGAATCAGAGGAATTATCCCCGGTACTCTTCTCAGTTTCCTTGAGTATGAGCTTCAGAAGCTGGATGGTGAGGATGCAAGACTGGCAGATTATTTTGATGTCATTGCAGGAACTAGTACTGGTGGCCTTGTGACTGCCATGCTTACCGCCCCGGATGAAAACGGCCGTCCATTATTTGCTGCTAAAGATATCAACAAATTTTACCTTGAACACTGCCCTAAGATATTTCCCCAAGATAGTTGCAAAATTGATTGTCTTCCATTAACTCCAATAACTGATGCGGTGGCAGCGGTAAAAGCTTTCAGAGGGCCAAAGTATGATGGGGAGTATTTACATAATATAGTGAAGGAAAAGTTAGGAGACATAAGATTGCATCAGACATTGACCAACGTCATAATTCCCACGTTTGATATAAAGAGGCTCCAACCAACCATCTTCTCCAGCTATGAGGTGAGAAAGAACAGTAGCCTAGATGCTTTACTCTCGGATATATGCATTGCAACTTCAGCAGCCCCAACCTTTCTTCCAGCCCATCATTTTGAAACCGAAAATTCCACGACTGGTCAAATAAGAGAATTTGATCTCATTGATGGTGGTGTTGCTGCTAATAACCCAGCTTTGGTGGCTATAAGTGAAGTGTCAAAAGAAATTTACAAGGGAAATCCCGACTTTTTTACAATGAAGGCAACTGAATACGCCCGGTTTCTAGTTGTATCATTGGGTACTGGTTCAGCAAAATGTGATGAGAAGTACGATGCCCAAAATGCAGCTAAGTGGGGTATTTTGGGATGGTTGATCGGAGGCGGTTCTTGTCCGTTGGTTGATATATTTACTCAAGCAAGTAGTGATATGGTTGACTTCCACCTTTCTACAGTGTTCCAAGCCCTTCACTCTGAGAAAAATTACCTAAGAATCCAGGATGATGATTTGGGTAAGACATTGTGTTCTGTGGATATTGCTACAGAAGAAAACTTGCAAAATCTTGTAAAAGTTGGGGAAAATTTGTTAAAGAAACCAGTTTCCCGGGTAAACTTGGAAACCGGTATCCATGAGCCTGCCCATCATTCTACCAACGAAGAGGCTCTAGTAAGGGTAGCTGGAATTTTGTCCAAGGAAAGGAGAGTCCGTGAAATGAGATCGCCACAGGGAAAGAAGGCCACAACAACAACCAGCTCCAACTTGTCATTCTCCTTCATCAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

441

Amino Acids

48.37

Weight (kDa)

5.62

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 35 - 250 4.2e-25 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 267, 401, 410, 924
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 6 cut(s) 317, 670, 695, 768, 1120, 1221
AcuI CTGAAG 3 cut(s) 53, 158, 609
AfaI GTAC 4 cut(s) 145, 238, 844, 872
AfiI CCNNNNNNNGG 4 cut(s) 17, 83, 739, 1236
AgeI ACCGGT 1 cut(s) 1160
AgsI TTSAA 2 cut(s) 329, 662
AhlI ACTAGT 1 cut(s) 233
AjnI CCWGG 1 cut(s) 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 1289, 1321
AluBI AGCT 8 cut(s) 172, 181, 419, 564, 737, 890, 1217, 1293
AluI AGCT 8 cut(s) 172, 181, 419, 564, 737, 890, 1217, 1293
Alw26I GTCTC 2 cut(s) 78, 474
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 1143
AoxI GGCC 4 cut(s) 244, 283, 428, 1275
ApeKI GCWGC 5 cut(s) 299, 407, 629, 722, 887
ApoI RAATTY 6 cut(s) 317, 670, 695, 768, 1120, 1221
AsiGI ACCGGT 1 cut(s) 1160
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 5 cut(s) 141, 272, 820, 1144, 1145
AsuHPI GGTGA 2 cut(s) 200, 583
AvaI CYCGRG 1 cut(s) 1143
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 5 cut(s) 286, 419, 641, 709, 899
BccI CCATC 8 cut(s) 107, 179, 434, 560, 660, 704, 903, 1188
BceAI ACGGC 2 cut(s) 270, 298
BciT130I CCWGG 1 cut(s) 1037
BciVI GTATCC 1 cut(s) 1175
BcnI CCSGG 5 cut(s) 141, 272, 820, 1144, 1145
BcoDI GTCTC 2 cut(s) 78, 474
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 4 cut(s) 234, 590, 827, 1205
BfmI CTRYAG 2 cut(s) 990, 1080
BfuI GTATCC 1 cut(s) 1175
BisI GCNGC 5 cut(s) 300, 408, 630, 723, 888
BlsI GCNGC 5 cut(s) 301, 409, 631, 724, 889
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 6 cut(s) 141, 272, 820, 1037, 1144, 1145
BmeT110I CYCGRG 1 cut(s) 1143
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 542
BmrFI CCNGG 6 cut(s) 141, 272, 820, 1037, 1144, 1145
BmsI GCATC 5 cut(s) 184, 388, 502, 583, 865
BoxI GACNNNNGTC 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 544
BpuEI CTTGAG 2 cut(s) 182, 939
BpuMI CCSGG 5 cut(s) 141, 272, 820, 1144, 1145
BsaBI GATNNNNATC 1 cut(s) 11
BsaJI CCNNGG 5 cut(s) 16, 139, 270, 1143, 1230
BsaWI WCCGGW 1 cut(s) 1160
BsaXI ACNNNNNCTCC 2 cut(s) 1231, 1261
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 83, 739, 1236
Bse118I RCCGGY 1 cut(s) 1160
Bse1I ACTGG 5 cut(s) 207, 244, 685, 850, 1136
Bse3DI GCAATG 2 cut(s) 222, 615
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 1 cut(s) 1037
BseDI CCNNGG 5 cut(s) 16, 139, 270, 1143, 1230
BseGI GGATG 5 cut(s) 190, 199, 280, 914, 1045
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 4 cut(s) 17, 83, 739, 1236
BseMI GCAATG 2 cut(s) 222, 615
BseMII CTCAG 2 cut(s) 166, 1005
BseNI ACTGG 5 cut(s) 207, 244, 685, 850, 1136
BseX3I CGGCCG 1 cut(s) 283
BseXI GCAGC 5 cut(s) 286, 419, 641, 709, 899
BseYI CCCAGC 1 cut(s) 733
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 4 cut(s) 246, 285, 430, 1277
BshTI ACCGGT 1 cut(s) 1160
BsiEI CGRYCG 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 1143
BsiSI CCGG 5 cut(s) 141, 272, 820, 1144, 1161
BslI CCNNNNNNNGG 4 cut(s) 17, 83, 739, 1236
BsmAI GTCTC 2 cut(s) 78, 474
BsnI GGCC 4 cut(s) 246, 285, 430, 1277
BsoBI CYCGRG 1 cut(s) 1143
Bsp143I GATC 5 cut(s) 20, 59, 700, 915, 1256
BspACI CCGC 4 cut(s) 267, 401, 410, 924
BspANI GGCC 4 cut(s) 246, 285, 430, 1277
BspCNI CTCAG 2 cut(s) 165, 1006
BspLI GGNNCC 1 cut(s) 542
BspPI GGATC 1 cut(s) 28
BsrDI GCAATG 2 cut(s) 222, 615
BsrFI RCCGGY 1 cut(s) 1160
BsrI ACTGG 5 cut(s) 207, 244, 685, 850, 1136
BssAI RCCGGY 1 cut(s) 1160
BssECI CCNNGG 5 cut(s) 16, 139, 270, 1143, 1230
BssMI GATC 5 cut(s) 20, 59, 700, 915, 1256
BssT1I CCWWGG 1 cut(s) 1230
Bst2UI CCWGG 1 cut(s) 1037
Bst4CI ACNGT 3 cut(s) 100, 584, 994
Bst6I CTCTTC 3 cut(s) 36, 153, 1191
BstC8I GCNNGC 1 cut(s) 1176
BstDEI CTNAG 6 cut(s) 104, 152, 339, 891, 1014, 1028
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 5 cut(s) 190, 199, 280, 914, 1045
BstKTI GATC 5 cut(s) 23, 62, 703, 918, 1259
BstMAI GTCTC 2 cut(s) 78, 474
BstMBI GATC 5 cut(s) 20, 59, 700, 915, 1256
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 7 cut(s) 178, 203, 407, 416, 626, 743, 884
BstNI CCWGG 1 cut(s) 1037
BstPAI GACNNNNGTC 1 cut(s) 509
BstSCI CCNGG 6 cut(s) 139, 270, 818, 1035, 1142, 1143
BstSFI CTRYAG 2 cut(s) 990, 1080
BstV1I GCAGC 5 cut(s) 286, 419, 641, 709, 899
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BstZI CGGCCG 1 cut(s) 283
BsuI GTATCC 1 cut(s) 1175
BsuRI GGCC 4 cut(s) 246, 285, 430, 1277
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 5 cut(s) 190, 199, 280, 914, 1045
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 3 cut(s) 96, 331, 999
Cac8I GCNNGC 1 cut(s) 1176
CaiI CAGNNNCTG 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 1160
Cfr13I GGNCC 1 cut(s) 428
Cfr9I CCCGGG 1 cut(s) 1143
Csp6I GTAC 4 cut(s) 144, 237, 843, 871
CspAI ACCGGT 1 cut(s) 1160
CviAII CATG 2 cut(s) 259, 1169
CviQI GTAC 4 cut(s) 144, 237, 843, 871
DdeI CTNAG 6 cut(s) 104, 152, 339, 891, 1014, 1028
DpnI GATC 5 cut(s) 22, 61, 702, 917, 1258
DpnII GATC 5 cut(s) 20, 59, 700, 915, 1256
EaeI YGGCCR 1 cut(s) 283
EagI CGGCCG 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 36, 153, 1191
EarI CTCTTC 3 cut(s) 36, 153, 1191
EclXI CGGCCG 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 1230
Eco32I GATATC 1 cut(s) 310
Eco52I CGGCCG 1 cut(s) 283
Eco57I CTGAAG 3 cut(s) 53, 158, 609
Eco88I CYCGRG 1 cut(s) 1143
EcoRII CCWGG 1 cut(s) 1035
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 1230
EcoT22I ATGCAT 1 cut(s) 617
ErhI CCWWGG 1 cut(s) 1230
FaeI CATG 2 cut(s) 262, 1172
FatI CATG 2 cut(s) 258, 1168
Fnu4HI GCNGC 5 cut(s) 300, 408, 630, 723, 888
FokI GGATG 5 cut(s) 197, 206, 287, 921, 1052
Fsp4HI GCNGC 5 cut(s) 300, 408, 630, 723, 888
FspBI CTAG 4 cut(s) 234, 590, 827, 1205
GluI GCNGC 5 cut(s) 300, 408, 630, 723, 888
GsaI CCCAGC 1 cut(s) 737
GsuI CTGGAG 1 cut(s) 544
HaeIII GGCC 4 cut(s) 246, 285, 430, 1277
HapII CCGG 5 cut(s) 141, 272, 820, 1144, 1161
Hin1II CATG 2 cut(s) 262, 1172
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 3 cut(s) 123, 1032, 1242
HpaII CCGG 5 cut(s) 141, 272, 820, 1144, 1161
HphI GGTGA 2 cut(s) 200, 583
Hpy166II GTNNAC 2 cut(s) 976, 1150
Hpy188I TCNGA 7 cut(s) 128, 177, 425, 498, 607, 920, 1015
Hpy188III TCNNGA 2 cut(s) 49, 785
Hpy8I GTNNAC 2 cut(s) 976, 1150
HpyAV CCTTC 6 cut(s) 77, 460, 796, 1016, 1267, 1321
HpyCH4III ACNGT 3 cut(s) 100, 584, 994
HpyCH4IV ACGT 2 cut(s) 510, 524
HpyCH4V TGCA 8 cut(s) 197, 227, 363, 493, 615, 620, 887, 1096
HpyF10VI GCNNNNNNNGC 7 cut(s) 178, 203, 407, 416, 626, 743, 884
HpyF3I CTNAG 6 cut(s) 104, 152, 339, 891, 1014, 1028
HpySE526I ACGT 2 cut(s) 510, 524
Hsp92II CATG 2 cut(s) 262, 1172
Kzo9I GATC 5 cut(s) 20, 59, 700, 915, 1256
LmnI GCTCC 2 cut(s) 546, 1298
Lsp1109I GCAGC 5 cut(s) 286, 419, 641, 709, 899
LweI GCATC 5 cut(s) 184, 388, 502, 583, 865
MaeI CTAG 4 cut(s) 234, 590, 827, 1205
MaeII ACGT 2 cut(s) 510, 524
MaeIII GTNAC 2 cut(s) 94, 250
MalI GATC 5 cut(s) 22, 61, 702, 917, 1258
MboI GATC 5 cut(s) 20, 59, 700, 915, 1256
MboII GAAGA 7 cut(s) 23, 140, 368, 547, 635, 1097, 1208
MflI RGATCY 1 cut(s) 20
MlyI GAGTC 1 cut(s) 1251
MmeI TCCRAC 2 cut(s) 568, 1320
MnlI CCTC 9 cut(s) 101, 110, 122, 184, 419, 531, 562, 914, 1192
Mph1103I ATGCAT 1 cut(s) 617
MseI TTAA 3 cut(s) 383, 1127, 1324
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 5 cut(s) 141, 272, 820, 1144, 1161
MspR9I CCNGG 6 cut(s) 141, 272, 820, 1037, 1144, 1145
MvaI CCWGG 1 cut(s) 1037
MwoI GCNNNNNNNGC 7 cut(s) 178, 203, 407, 416, 626, 743, 884
NciI CCSGG 5 cut(s) 141, 272, 820, 1144, 1145
NdeII GATC 5 cut(s) 20, 59, 700, 915, 1256
NlaIII CATG 2 cut(s) 262, 1172
NlaIV GGNNCC 1 cut(s) 542
NmuCI GTSAC 2 cut(s) 94, 250
NsiI ATGCAT 1 cut(s) 617
PfeI GAWTC 2 cut(s) 123, 1032
PfoI TCCNGGA 1 cut(s) 1035
PinAI ACCGGT 1 cut(s) 1160
PkrI GCNGC 5 cut(s) 301, 409, 631, 724, 889
PleI GAGTC 1 cut(s) 1250
PpsI GAGTC 1 cut(s) 1250
PshAI GACNNNNGTC 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 1035
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 1 cut(s) 1035
PspN4I GGNNCC 1 cut(s) 542
PspPI GGNCC 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 4 cut(s) 145, 238, 844, 872
RsaNI GTAC 4 cut(s) 144, 237, 843, 871
SaqAI TTAA 3 cut(s) 383, 1127, 1324
SatI GCNGC 5 cut(s) 300, 408, 630, 723, 888
Sau3AI GATC 5 cut(s) 20, 59, 700, 915, 1256
Sau96I GGNCC 1 cut(s) 428
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 1251
ScrFI CCNGG 6 cut(s) 141, 272, 820, 1037, 1144, 1145
SfaNI GCATC 5 cut(s) 184, 388, 502, 583, 865
SfcI CTRYAG 2 cut(s) 990, 1080
SmaI CCCGGG 1 cut(s) 1145
SmlI CTYRAG 2 cut(s) 161, 954
SmoI CTYRAG 2 cut(s) 161, 954
SpeI ACTAGT 1 cut(s) 233
SsiI CCGC 4 cut(s) 267, 401, 410, 924
SspMI CTAG 4 cut(s) 234, 590, 827, 1205
StyD4I CCNGG 6 cut(s) 139, 270, 818, 1035, 1142, 1143
StyI CCWWGG 1 cut(s) 1230
TaaI ACNGT 3 cut(s) 100, 584, 994
TaiI ACGT 2 cut(s) 513, 527
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 2 cut(s) 123, 1032
Tru1I TTAA 3 cut(s) 383, 1127, 1324
Tru9I TTAA 3 cut(s) 383, 1127, 1324
TscAI CASTG 3 cut(s) 103, 338, 999
TseFI GTSAC 2 cut(s) 94, 250
TseI GCWGC 5 cut(s) 299, 407, 629, 722, 887
Tsp45I GTSAC 2 cut(s) 94, 250
TspDTI ATGAA 4 cut(s) 34, 291, 815, 1303
TspGWI ACGGA 3 cut(s) 33, 924, 1235
TspMI CCCGGG 1 cut(s) 1143
TspRI CASTG 3 cut(s) 103, 338, 999
XapI RAATTY 6 cut(s) 317, 670, 695, 768, 1120, 1221
XmaI CCCGGG 1 cut(s) 1143
XspI CTAG 4 cut(s) 234, 590, 827, 1205
ZrmI AGTACT 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.