RLG00000027834

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002102
Physical Location & Seq
Forward (+)
15777207 .. 15779653
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027834

Sequence Viewer

Length: 1014 bp
ATGCCGCAACCAAGCAAAGACCAGGATACAAGTTCCACCAAGAGAATTCGCAGCATATATGATGAGCCCTATGCCACTGATTGTTTGAGTGAAGATGATGAGGAGTATAATATTAAGAAAAGTAGATCAGTGCGTAATAAGCGCATTGTTTCAGAGGTTTTGGTATGGGGTAACCCATGTGAATCATCTGCAAAGACTTCATTCAATTGCAATACCTATGGCACCAAGTTTGGTACTAGTATGGATTTCGATGACAGTAAGGAAACTCGAAGATGTGCTACCAAATATAAGGGAGTTCGGCGTAGAAAATGGGGAACGTATGTGGCAGAAATTCTAGATCCATTTCGAAAGACGAGATTATGGCTTGGCACTTATACTACTGCAGAGGAGGCTGCTATGGCTTATCAGAAAAAGAGGGTCGAGTTTGATAACATAAAGTTATTGCAAAAGACTAAGAGTAATTTTGAAAAGTTGCAATTATCAGATAAGGCCAAGGGAGTGTGTGAGACCAAGCATAATTATCAAGGCAATCATTTATCAGAGAGTCAGGATTTATCAGCTGATGCTGCTATTGAAACTGTTTCATATGAAGACACCAAAAGTGTGTTTTCTCATCCATCACCTTCATCTGGGCTTGATATTTCTAGTACAGCTGCACAAAATATTGGACTCAGAAAGTCAGATGAAGAGTCCACTTTGGAGGTTTCTGGACGAGAAGGCCCTGTGCCACTAGATTCTGAAGAAGAGCAATACAATTTGAAGGCTCCTGAAAAGCCAACATTGTTACCACCAGTACATTTGAATATTGGGTTTGTGGATAATTACATGCTTGAGTGTTTGGATCGGTATTTTGATGGTATGACTGACATAGTTGATCATCCTGCGTATGATGATGTAAATGGACTCTTCCTTCCAGCTGTAGTGAGGCCAATGTTAGATTCCTTTGAAGCTTCTAAGCAAGTCCCTCAGCCTGCTTTAAGTGATGTGGTTGCAGGTATGACGGGTAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

338

Amino Acids

37.91

Weight (kDa)

5.37

Isoelectric Point (pI)

62.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 94 - 137 7.9e-10 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 983
AccB1I GGYRCC 1 cut(s) 221
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 332, 849
AcsI RAATTY 2 cut(s) 45, 330
AcuI CTGAAG 1 cut(s) 759
AfaI GTAC 3 cut(s) 235, 649, 795
AfiI CCNNNNNNNGG 1 cut(s) 629
AgsI TTSAA 6 cut(s) 205, 467, 575, 760, 802, 947
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 1 cut(s) 21
AjuI GAANNNNNNNTTGG 2 cut(s) 922, 954
AluBI AGCT 4 cut(s) 560, 653, 917, 950
AluI AGCT 4 cut(s) 560, 653, 917, 950
Alw26I GTCTC 1 cut(s) 500
AlwI GGATC 2 cut(s) 332, 849
AoxI GGCC 3 cut(s) 489, 718, 926
ApeKI GCWGC 4 cut(s) 51, 392, 566, 653
ApoI RAATTY 2 cut(s) 45, 330
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 719
AsuHPI GGTGA 1 cut(s) 612
AsuII TTCGAA 1 cut(s) 346
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
BbsI GAAGAC 1 cut(s) 597
BbvCI CCTCAGC 1 cut(s) 966
BbvI GCAGC 4 cut(s) 63, 379, 553, 640
BccI CCATC 2 cut(s) 625, 848
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 1 cut(s) 19
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 1 cut(s) 500
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 4 cut(s) 237, 335, 645, 731
BfmI CTRYAG 2 cut(s) 381, 918
BfuAI ACCTGC 1 cut(s) 983
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 5 cut(s) 5, 52, 393, 567, 654
BlsI GCNGC 5 cut(s) 6, 53, 394, 568, 655
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 2 cut(s) 223, 765
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 597
Bpu10I CCTNAGC 1 cut(s) 966
Bpu14I TTCGAA 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 851
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 492
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 791
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 2 cut(s) 613, 877
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 685, 980
BseNI ACTGG 1 cut(s) 791
BseRI GAGGAG 2 cut(s) 116, 401
BseXI GCAGC 4 cut(s) 63, 379, 553, 640
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 3 cut(s) 491, 720, 928
BshNI GGYRCC 1 cut(s) 221
BslFI GGGAC 1 cut(s) 947
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 947
BsnI GGCC 3 cut(s) 491, 720, 928
Bso31I GGTCTC 1 cut(s) 500
Bsp119I TTCGAA 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 4 cut(s) 125, 337, 841, 874
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 491, 720, 928
BspCNI CTCAG 2 cut(s) 684, 979
BspLI GGNNCC 2 cut(s) 223, 765
BspMAI CTGCAG 1 cut(s) 385
BspMI ACCTGC 1 cut(s) 983
BspPI GGATC 2 cut(s) 332, 849
BspQI GCTCTTC 1 cut(s) 738
BspT104I TTCGAA 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 500
BsrI ACTGG 1 cut(s) 791
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 4 cut(s) 125, 337, 841, 874
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 257, 580
Bst6I CTCTTC 3 cut(s) 681, 738, 911
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 972
BstDEI CTNAG 4 cut(s) 453, 671, 954, 966
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 2 cut(s) 613, 877
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 4 cut(s) 128, 340, 844, 877
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 4 cut(s) 125, 337, 841, 874
BstMWI GCNNNNNNNGC 4 cut(s) 139, 389, 398, 566
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 829
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 2 cut(s) 381, 918
BstV1I GCAGC 4 cut(s) 63, 379, 553, 640
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 3 cut(s) 491, 720, 928
BtsCI GGATG 2 cut(s) 613, 877
BtsIMutI CAGTG 2 cut(s) 75, 135
BveI ACCTGC 1 cut(s) 983
Cac8I GCNNGC 1 cut(s) 972
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 3 cut(s) 234, 648, 794
CviAII CATG 2 cut(s) 177, 826
CviQI GTAC 3 cut(s) 234, 648, 794
DdeI CTNAG 4 cut(s) 453, 671, 954, 966
DpnI GATC 4 cut(s) 127, 339, 843, 876
DpnII GATC 4 cut(s) 125, 337, 841, 874
Eam1104I CTCTTC 3 cut(s) 681, 738, 911
EarI CTCTTC 3 cut(s) 681, 738, 911
Eco130I CCWWGG 1 cut(s) 492
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 500
Eco57I CTGAAG 1 cut(s) 759
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 719
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 492
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 2 cut(s) 180, 829
FaqI GGGAC 1 cut(s) 947
FatI CATG 2 cut(s) 176, 825
FauNDI CATATG 1 cut(s) 586
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 5 cut(s) 5, 52, 393, 567, 654
FokI GGATG 2 cut(s) 600, 864
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 5 cut(s) 5, 52, 393, 567, 654
FspBI CTAG 4 cut(s) 237, 335, 645, 731
GlaI GCGC 1 cut(s) 143
GluI GCNGC 5 cut(s) 5, 52, 393, 567, 654
HaeIII GGCC 3 cut(s) 491, 720, 928
HhaI GCGC 1 cut(s) 144
Hin1II CATG 2 cut(s) 180, 829
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 948
HinfI GANTC 7 cut(s) 182, 544, 669, 689, 734, 903, 938
HphI GGTGA 1 cut(s) 612
Hpy166II GTNNAC 1 cut(s) 693
Hpy188I TCNGA 7 cut(s) 154, 408, 484, 541, 674, 682, 739
Hpy188III TCNNGA 4 cut(s) 335, 548, 708, 767
Hpy8I GTNNAC 1 cut(s) 693
HpyAV CCTTC 4 cut(s) 633, 710, 754, 920
HpyCH4III ACNGT 2 cut(s) 257, 580
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 7 cut(s) 191, 210, 383, 445, 475, 656, 992
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 389, 398, 566
HpyF3I CTNAG 4 cut(s) 453, 671, 954, 966
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 2 cut(s) 180, 829
HspAI GCGC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 4 cut(s) 125, 337, 841, 874
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 1 cut(s) 769
Lsp1109I GCAGC 4 cut(s) 63, 379, 553, 640
LweI GCATC 1 cut(s) 553
MaeI CTAG 4 cut(s) 237, 335, 645, 731
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 170, 783
MalI GATC 4 cut(s) 127, 339, 843, 876
MboI GATC 4 cut(s) 125, 337, 841, 874
MboII GAAGA 7 cut(s) 104, 282, 602, 698, 752, 755, 898
MfeI CAATTG 1 cut(s) 205
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 8 cut(s) 45, 205, 330, 460, 476, 517, 754, 820
MlyI GAGTC 4 cut(s) 553, 663, 698, 897
MnlI CCTC 8 cut(s) 94, 148, 379, 382, 408, 694, 918, 975
MseI TTAA 2 cut(s) 114, 977
MspA1I CMGCKG 3 cut(s) 560, 653, 917
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 4 cut(s) 139, 389, 398, 566
NdeI CATATG 1 cut(s) 586
NdeII GATC 4 cut(s) 125, 337, 841, 874
NlaIII CATG 2 cut(s) 180, 829
NlaIV GGNNCC 2 cut(s) 223, 765
NspI RCATGY 1 cut(s) 829
NspV TTCGAA 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 738
PfeI GAWTC 3 cut(s) 182, 734, 938
PkrI GCNGC 5 cut(s) 6, 53, 394, 568, 655
PleI GAGTC 4 cut(s) 552, 663, 697, 897
PpsI GAGTC 4 cut(s) 552, 663, 697, 897
Psp6I CCWGG 1 cut(s) 21
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 223, 765
PspPI GGNCC 1 cut(s) 719
PstI CTGCAG 1 cut(s) 385
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 3 cut(s) 560, 653, 917
RsaI GTAC 3 cut(s) 235, 649, 795
RsaNI GTAC 3 cut(s) 234, 648, 794
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 2 cut(s) 114, 977
SatI GCNGC 5 cut(s) 5, 52, 393, 567, 654
Sau3AI GATC 4 cut(s) 125, 337, 841, 874
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 4 cut(s) 553, 663, 698, 897
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 2 cut(s) 381, 918
SfuI TTCGAA 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 8 cut(s) 45, 205, 330, 460, 476, 517, 754, 820
SsiI CCGC 1 cut(s) 5
SspI AATATT 3 cut(s) 112, 664, 805
SspMI CTAG 4 cut(s) 237, 335, 645, 731
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 257, 580
TaiI ACGT 1 cut(s) 320
TaqI TCGA 4 cut(s) 249, 268, 346, 420
TasI AATT 8 cut(s) 45, 205, 330, 460, 476, 517, 754, 820
TatI WGTACW 2 cut(s) 647, 793
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 182, 734, 938
Tru1I TTAA 2 cut(s) 114, 977
Tru9I TTAA 2 cut(s) 114, 977
TscAI CASTG 2 cut(s) 82, 135
TseI GCWGC 4 cut(s) 51, 392, 566, 653
TspDTI ATGAA 5 cut(s) 189, 573, 603, 615, 699
TspRI CASTG 2 cut(s) 82, 135
XapI RAATTY 2 cut(s) 45, 330
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 1 cut(s) 829
XspI CTAG 4 cut(s) 237, 335, 645, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.