Rroxscaffold_4G00296390

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002102
Physical Location & Seq
Forward (+)
16456277 .. 16459269
2993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296390.1

Sequence Viewer

Length: 984 bp
ATGAAGCAACCAAGCAAAGACCAGGATACAAGTTCCACCAAGAGAATTCGCATCATATATGATGATCCCTATGCCACTGATTGTTCGAGTGAAGATGATGAGGAATATAATATTAAGAAAAATAGATCAGTGCGTAATAACCGCATTGTTTCAGAGATTTTGGTGGGGGAAACTCGAAGATGTGCTACCAAATATAAGGGAGTTCGGCGTAGAAAATGGGGAACTTATGCGGCAGAAATTCGAGATCCATTTCGAAAGACTAGATTATGGCTTGGTACTTATACTACTGCAGAGGAAGCTGCTATGGCTTATCAGAAAAAGAGGGTCGAGTTTGATAACATAAAGTTATTGCAAAAGACTAAGAGTAATCTTGAAAAGTTGCAATTATCAGATAAGGCCAAGGGAGTGTGTGAGACTGAGACCAAGCATAATTATCAAGGCAATCATTTATCAGAGAGTCAGGATTTATCAGCTGATGCTGCTATTGAAACTGTTTCATATGAAGACACCAAAAGTGTGTTTTCTCATCCATCACCTTCATCTGTGCTTGATATTTCTAGTACAGCTGCACAAAATATTGGACTCAGAAAGTCAGATGAAGAGTCCACTTTGGAGGTTTCTGGACGAGAAGGCCCTGTGCCACTAGATTCTGAAGAAGAGCAATACAATTTGAAGGCTCCTGAAAAGCCAACATTGTTACCACCAGTGCATTTGAATATTGGGTTTGTGGATAATTACATGCTTGAGTGTTTGGATCGGTATTTTGATGGTATGACTGACATAGTTGATCATCCTGCGTGTGATGATGTAAATGGACTCTTCCTTCCAGCTGTAGTGAGGCCAATGTTAGATTCCTTTGAAGCTTCTAAGCAAGTCCCTCAGCCTGCTTTAAGTGATGTGGTTGCAGTGATCTGTGAGAGTATTATCCTAACTAGGAACTCTACCAGTGATAAGTTGCAACTTGAGAAGAAAGCAAGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

327

Amino Acids

36.95

Weight (kDa)

5.6

Isoelectric Point (pI)

64.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 63 - 106 1.7e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 142, 230
AclWI GGATC 3 cut(s) 59, 239, 762
AcsI RAATTY 2 cut(s) 45, 237
AcuI CTGAAG 1 cut(s) 672
AfaI GTAC 2 cut(s) 277, 562
AgsI TTSAA 5 cut(s) 374, 488, 673, 715, 860
AjnI CCWGG 1 cut(s) 21
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AluBI AGCT 5 cut(s) 299, 473, 566, 830, 863
AluI AGCT 5 cut(s) 299, 473, 566, 830, 863
Alw26I GTCTC 2 cut(s) 407, 413
AlwI GGATC 3 cut(s) 59, 239, 762
AoxI GGCC 3 cut(s) 396, 631, 839
ApeKI GCWGC 3 cut(s) 299, 479, 566
ApoI RAATTY 2 cut(s) 45, 237
AspS9I GGNCC 1 cut(s) 632
AsuHPI GGTGA 1 cut(s) 525
AsuII TTCGAA 1 cut(s) 253
BarI GAAGNNNNNNTAC 2 cut(s) 169, 201
BbsI GAAGAC 1 cut(s) 510
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 3 cut(s) 286, 466, 553
BccI CCATC 2 cut(s) 538, 761
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 1 cut(s) 19
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 2 cut(s) 407, 413
BfaI CTAG 4 cut(s) 261, 558, 644, 933
BfmI CTRYAG 2 cut(s) 288, 831
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 4 cut(s) 231, 300, 480, 567
BlsI GCNGC 4 cut(s) 232, 301, 481, 568
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 60, 466
BpiI GAAGAC 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 879
Bpu14I TTCGAA 1 cut(s) 253
BpuEI CTTGAG 2 cut(s) 764, 983
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 1 cut(s) 399
Bse1I ACTGG 2 cut(s) 704, 945
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 2 cut(s) 526, 790
BseMII CTCAG 3 cut(s) 408, 598, 893
BseNI ACTGG 2 cut(s) 704, 945
BseXI GCAGC 3 cut(s) 286, 466, 553
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 3 cut(s) 398, 633, 841
BslFI GGGAC 1 cut(s) 860
BsmAI GTCTC 2 cut(s) 407, 413
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 3 cut(s) 398, 633, 841
Bso31I GGTCTC 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 253
Bsp143I GATC 6 cut(s) 64, 125, 244, 754, 787, 909
BspACI CCGC 2 cut(s) 142, 230
BspANI GGCC 3 cut(s) 398, 633, 841
BspCNI CTCAG 3 cut(s) 409, 597, 892
BspLI GGNNCC 1 cut(s) 678
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 3 cut(s) 59, 239, 762
BspQI GCTCTTC 1 cut(s) 651
BspT104I TTCGAA 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 413
BsrI ACTGG 2 cut(s) 704, 945
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 6 cut(s) 64, 125, 244, 754, 787, 909
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 3 cut(s) 594, 651, 824
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 885
BstDEI CTNAG 5 cut(s) 360, 417, 584, 867, 879
BstF5I GGATG 2 cut(s) 526, 790
BstKTI GATC 6 cut(s) 67, 128, 247, 757, 790, 912
BstMAI GTCTC 2 cut(s) 407, 413
BstMBI GATC 6 cut(s) 64, 125, 244, 754, 787, 909
BstMWI GCNNNNNNNGC 3 cut(s) 296, 305, 479
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 742
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 2 cut(s) 288, 831
BstV1I GCAGC 3 cut(s) 286, 466, 553
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 3 cut(s) 398, 633, 841
BtsCI GGATG 2 cut(s) 526, 790
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 5 cut(s) 75, 135, 711, 912, 952
Cac8I GCNNGC 1 cut(s) 885
Cfr13I GGNCC 1 cut(s) 632
Csp6I GTAC 2 cut(s) 276, 561
CviAII CATG 1 cut(s) 739
CviQI GTAC 2 cut(s) 276, 561
DdeI CTNAG 5 cut(s) 360, 417, 584, 867, 879
DpnI GATC 6 cut(s) 66, 127, 246, 756, 789, 911
DpnII GATC 6 cut(s) 64, 125, 244, 754, 787, 909
Eam1104I CTCTTC 3 cut(s) 594, 651, 824
EarI CTCTTC 3 cut(s) 594, 651, 824
Eco130I CCWWGG 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 1 cut(s) 742
FaqI GGGAC 1 cut(s) 860
FatI CATG 1 cut(s) 738
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 787
Fnu4HI GCNGC 4 cut(s) 231, 300, 480, 567
FokI GGATG 2 cut(s) 513, 777
Fsp4HI GCNGC 4 cut(s) 231, 300, 480, 567
FspBI CTAG 4 cut(s) 261, 558, 644, 933
GluI GCNGC 4 cut(s) 231, 300, 480, 567
HaeIII GGCC 3 cut(s) 398, 633, 841
Hin1II CATG 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 861
HinfI GANTC 6 cut(s) 457, 582, 602, 647, 816, 851
HphI GGTGA 1 cut(s) 525
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 7 cut(s) 154, 315, 391, 454, 587, 595, 652
Hpy188III TCNNGA 5 cut(s) 242, 371, 461, 621, 680
Hpy8I GTNNAC 1 cut(s) 606
HpyAV CCTTC 4 cut(s) 546, 623, 667, 833
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 7 cut(s) 290, 352, 382, 569, 709, 905, 958
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 305, 479
HpyF3I CTNAG 5 cut(s) 360, 417, 584, 867, 879
Hsp92II CATG 1 cut(s) 742
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 6 cut(s) 64, 125, 244, 754, 787, 909
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 1 cut(s) 682
Lsp1109I GCAGC 3 cut(s) 286, 466, 553
LweI GCATC 2 cut(s) 60, 466
MaeI CTAG 4 cut(s) 261, 558, 644, 933
MaeIII GTNAC 1 cut(s) 696
MalI GATC 6 cut(s) 66, 127, 246, 756, 789, 911
MboI GATC 6 cut(s) 64, 125, 244, 754, 787, 909
MboII GAAGA 8 cut(s) 104, 189, 515, 611, 665, 668, 811, 979
MflI RGATCY 1 cut(s) 244
MluCI AATT 6 cut(s) 45, 237, 383, 430, 667, 733
MlyI GAGTC 4 cut(s) 466, 576, 611, 810
MnlI CCTC 6 cut(s) 94, 286, 315, 607, 831, 888
MseI TTAA 2 cut(s) 114, 890
MspA1I CMGCKG 3 cut(s) 473, 566, 830
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 3 cut(s) 296, 305, 479
NdeI CATATG 1 cut(s) 499
NdeII GATC 6 cut(s) 64, 125, 244, 754, 787, 909
NlaIII CATG 1 cut(s) 742
NlaIV GGNNCC 1 cut(s) 678
NspI RCATGY 1 cut(s) 742
NspV TTCGAA 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 651
PfeI GAWTC 2 cut(s) 647, 851
PkrI GCNGC 4 cut(s) 232, 301, 481, 568
PleI GAGTC 4 cut(s) 465, 576, 610, 810
PpsI GAGTC 4 cut(s) 465, 576, 610, 810
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 1 cut(s) 632
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 3 cut(s) 473, 566, 830
RsaI GTAC 2 cut(s) 277, 562
RsaNI GTAC 2 cut(s) 276, 561
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 2 cut(s) 114, 890
SatI GCNGC 4 cut(s) 231, 300, 480, 567
Sau3AI GATC 6 cut(s) 64, 125, 244, 754, 787, 909
Sau96I GGNCC 1 cut(s) 632
SchI GAGTC 4 cut(s) 466, 576, 611, 810
ScrFI CCNGG 1 cut(s) 23
SetI ASST 7 cut(s) 301, 475, 538, 568, 618, 832, 865
SfaNI GCATC 2 cut(s) 60, 466
SfcI CTRYAG 2 cut(s) 288, 831
SfuI TTCGAA 1 cut(s) 253
SmlI CTYRAG 2 cut(s) 743, 962
SmoI CTYRAG 2 cut(s) 743, 962
Sse9I AATT 6 cut(s) 45, 237, 383, 430, 667, 733
SsiI CCGC 2 cut(s) 142, 230
SspI AATATT 3 cut(s) 112, 577, 718
SspMI CTAG 4 cut(s) 261, 558, 644, 933
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 493
TaqI TCGA 5 cut(s) 86, 175, 241, 253, 327
TasI AATT 6 cut(s) 45, 237, 383, 430, 667, 733
TatI WGTACW 1 cut(s) 560
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 2 cut(s) 647, 851
Tru1I TTAA 2 cut(s) 114, 890
Tru9I TTAA 2 cut(s) 114, 890
TscAI CASTG 5 cut(s) 82, 135, 711, 912, 952
TseI GCWGC 3 cut(s) 299, 479, 566
TspDTI ATGAA 5 cut(s) 17, 486, 516, 528, 612
TspRI CASTG 5 cut(s) 82, 135, 711, 912, 952
XapI RAATTY 2 cut(s) 45, 237
XceI RCATGY 1 cut(s) 742
XspI CTAG 4 cut(s) 261, 558, 644, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.