FvH4_7g16860

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002102
Physical Location & Seq
Reverse (-)
14416596 .. 14421333
4738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16860.t6

Sequence Viewer

Length: 1407 bp
ATGAAACGGGAGACTAAGATGAAGCAACCAAGCAAAGACCAGGATACAAGTTCCACCAAGAGAATTCGTATCATATGTGATGATCCCTATGCCACTGATTGTTCGAGTGAAGATGATGCAGATTATAATGTTAAGAAAAACAGATCAGTGTGTAATAAGCGCGTTGTTTCAGAGATTTTGGTTGAGGATGCCCAATGTGAATCATCTGCAAAGAATTCATTCAATTGCAATACCTATGACACCAAATTTGGTAATTGTATGGATATTGATGACAGTGAGAAAACTCGAAGATGTGGTACCGAATATAAGGGAGTTCGGCGTAGAAAATGGGGAAAGTATGTAGCGGAGATTCGAGATCCATTTCAAAAGACTAAATTATGGCTTGGCACTTTTACTACTGCAGAGGAGGCTAATATGGCTTATCAGACAAAGAAGGCCGAGTTTGATAACAGAAGGTTATTGCAAGAGACTAAGAGTAATCTTAAAAAGTTGCAAGCATCAAACAAGGCCAAGGGAGTGTGTGAGACCAAGCGTAATTGTATTGATGTTGATGACAGTGAGAAAACTAGAAGATGTTCTACCAGGCGGCGTACAAAATGGGGAGCGTATGCAGCGAAGAGTCAGGATTTATCAGCTGATGCTGCTATTGAAACTGTCTCATTCAGTTGCAATACCTATGGCACCAAATTTGGTAATTGTATGGATGTTGATGAAAGTGAGAAAACTCAAAGAATTATTACCAAATGTAAGGCAGTTCGGCGTACAAAAGGGGGAAAGTATTCAGCGCAGATTCGAGATCCATTTCGAAAGACTAGCGTATGGCTTGGCACTTTTACTACTGCAGAGGAGGCTTTTTTGGCTTACCAGAAAAAGAGGGTCAAGTTTGATAACAGAAGGTTATTGAAAAAGACCAAGAGTAATCTTAAAAAGTTGCATTTATCAAAAAAGGCCAAGGGAGAGTGTGAGACCAAGCGTAATTATGAACACAATCTTTTATCAGAGGAGAGTCGGGATTTATCAGCTGATGCTGCTATTGAAACTGTTTCATATGAAGACACCAAAATTGTGTCTTCTCATCCATCACTGTCATCTGTGCTTGATATTTCTAGAGCAGCACTAAATATTGGACTCAGAAAGAGGGATGAACAGTCCACTTTGGAGGTGTCTGGACGAGAAGCCCCTGTGCCACCATATGTTCAAGAAGAACAATGCAACTTGAAGGTTTCTGAAAAGCCAACACTGCTACCAGCAGTACAGTTGAATGTTGGGTTTGTGGATAATTACATGCTTGAGTGTTTGGATCGGTATTTTGTTGGTCTGACTGACATAGTTGATTATCCAGCGTGCGATGATGTGAATGGGACTCTTCCTTCCTGCTGTGGTGAGGCCAATGTTAGATTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

469

Amino Acids

53.23

Weight (kDa)

8.98

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 101 - 145 1.8e-08 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 2 cut(s) 296, 680
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 344, 586
AclWI GGATC 4 cut(s) 77, 350, 791, 1308
AcsI RAATTY 4 cut(s) 63, 214, 245, 686
AfaI GTAC 4 cut(s) 298, 592, 763, 1254
AgsI TTSAA 8 cut(s) 223, 365, 650, 904, 1037, 1199, 1219, 1261
AjnI CCWGG 2 cut(s) 39, 581
AjuI GAANNNNNNNTTGG 1 cut(s) 1382
AluBI AGCT 2 cut(s) 635, 1022
AluI AGCT 2 cut(s) 635, 1022
Alw26I GTCTC 5 cut(s) 5, 461, 518, 661, 959
AlwI GGATC 4 cut(s) 77, 350, 791, 1308
AoxI GGCC 4 cut(s) 435, 507, 948, 1386
ApeKI GCWGC 4 cut(s) 611, 641, 1028, 1112
ApoI RAATTY 4 cut(s) 63, 214, 245, 686
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
Asp700I GAANNNNTTC 3 cut(s) 218, 574, 778
Asp718I GGTACC 1 cut(s) 296
AspLEI GCGC 2 cut(s) 162, 787
AsuHPI GGTGA 1 cut(s) 1394
AsuII TTCGAA 1 cut(s) 805
BanI GGYRCC 2 cut(s) 296, 680
BarI GAAGNNNNNNTAC 4 cut(s) 280, 312, 562, 594
BbsI GAAGAC 2 cut(s) 1059, 1062
BbvI GCAGC 4 cut(s) 623, 628, 1015, 1124
BccI CCATC 1 cut(s) 1087
BciT130I CCWGG 2 cut(s) 41, 583
BciVI GTATCC 1 cut(s) 37
BcoDI GTCTC 5 cut(s) 5, 461, 518, 661, 959
BfaI CTAG 3 cut(s) 567, 813, 1107
BfmI CTRYAG 2 cut(s) 399, 840
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 5 cut(s) 587, 612, 642, 1029, 1113
BlsI GCNGC 5 cut(s) 588, 613, 643, 1030, 1114
Bme1390I CCNGG 2 cut(s) 41, 583
BmiI GGNNCC 2 cut(s) 298, 682
BmrFI CCNGG 2 cut(s) 41, 583
BmsI GCATC 5 cut(s) 106, 178, 506, 628, 1015
BpiI GAAGAC 2 cut(s) 1059, 1062
Bpu14I TTCGAA 1 cut(s) 805
BpuEI CTTGAG 1 cut(s) 1310
BsaI GGTCTC 2 cut(s) 518, 959
BsaJI CCNNGG 2 cut(s) 510, 951
BseBI CCWGG 2 cut(s) 41, 583
BseDI CCNNGG 2 cut(s) 510, 951
BseGI GGATG 4 cut(s) 193, 709, 1075, 1147
BseMII CTCAG 1 cut(s) 1144
BseRI GAGGAG 3 cut(s) 419, 860, 1016
BseXI GCAGC 4 cut(s) 623, 628, 1015, 1124
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 4 cut(s) 437, 509, 950, 1388
BshNI GGYRCC 2 cut(s) 296, 680
BslFI GGGAC 1 cut(s) 1375
BsmAI GTCTC 5 cut(s) 5, 461, 518, 661, 959
BsmFI GGGAC 1 cut(s) 1375
BsnI GGCC 4 cut(s) 437, 509, 950, 1388
Bso31I GGTCTC 2 cut(s) 518, 959
Bsp119I TTCGAA 1 cut(s) 805
Bsp143I GATC 5 cut(s) 82, 143, 355, 796, 1300
BspACI CCGC 2 cut(s) 344, 586
BspANI GGCC 4 cut(s) 437, 509, 950, 1388
BspCNI CTCAG 1 cut(s) 1143
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 298, 682
BspMAI CTGCAG 2 cut(s) 403, 844
BspPI GGATC 4 cut(s) 77, 350, 791, 1308
BspT104I TTCGAA 1 cut(s) 805
BspT107I GGYRCC 2 cut(s) 296, 680
BspTNI GGTCTC 2 cut(s) 518, 959
BssECI CCNNGG 2 cut(s) 510, 951
BssMI GATC 5 cut(s) 82, 143, 355, 796, 1300
BssT1I CCWWGG 2 cut(s) 510, 951
Bst2UI CCWGG 2 cut(s) 41, 583
Bst4CI ACNGT 7 cut(s) 275, 557, 655, 1042, 1086, 1149, 1257
Bst6I CTCTTC 2 cut(s) 611, 1371
BstBI TTCGAA 1 cut(s) 805
BstC8I GCNNGC 2 cut(s) 495, 1345
BstDEI CTNAG 3 cut(s) 15, 471, 1130
BstF5I GGATG 4 cut(s) 193, 709, 1075, 1147
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 2 cut(s) 162, 787
BstKTI GATC 5 cut(s) 85, 146, 358, 799, 1303
BstMAI GTCTC 5 cut(s) 5, 461, 518, 661, 959
BstMBI GATC 5 cut(s) 82, 143, 355, 796, 1300
BstMWI GCNNNNNNNGC 8 cut(s) 407, 416, 611, 641, 848, 857, 1028, 1240
BstNI CCWGG 2 cut(s) 41, 583
BstNSI RCATGY 1 cut(s) 1288
BstSCI CCNGG 2 cut(s) 39, 581
BstSFI CTRYAG 2 cut(s) 399, 840
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 623, 628, 1015, 1124
BstV2I GAAGAC 2 cut(s) 1059, 1062
BstX2I RGATCY 2 cut(s) 355, 796
BstYI RGATCY 2 cut(s) 355, 796
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 4 cut(s) 437, 509, 950, 1388
BtgZI GCGATG 1 cut(s) 1362
BtsCI GGATG 4 cut(s) 193, 709, 1075, 1147
BtsI GCAGTG 1 cut(s) 1238
BtsIMutI CAGTG 6 cut(s) 93, 153, 280, 562, 1082, 1238
Cac8I GCNNGC 2 cut(s) 495, 1345
CfoI GCGC 2 cut(s) 162, 787
Csp6I GTAC 4 cut(s) 297, 591, 762, 1253
CviAII CATG 1 cut(s) 1285
CviQI GTAC 4 cut(s) 297, 591, 762, 1253
DdeI CTNAG 3 cut(s) 15, 471, 1130
DpnI GATC 5 cut(s) 84, 145, 357, 798, 1302
DpnII GATC 5 cut(s) 82, 143, 355, 796, 1300
Eam1104I CTCTTC 2 cut(s) 611, 1371
EarI CTCTTC 2 cut(s) 611, 1371
Eco130I CCWWGG 2 cut(s) 510, 951
Eco31I GGTCTC 2 cut(s) 518, 959
EcoRI GAATTC 2 cut(s) 63, 214
EcoRII CCWGG 2 cut(s) 39, 581
EcoT14I CCWWGG 2 cut(s) 510, 951
ErhI CCWWGG 2 cut(s) 510, 951
FaeI CATG 1 cut(s) 1288
FaqI GGGAC 1 cut(s) 1375
FatI CATG 1 cut(s) 1284
FauNDI CATATG 3 cut(s) 74, 1048, 1192
Fnu4HI GCNGC 5 cut(s) 587, 612, 642, 1029, 1113
FokI GGATG 4 cut(s) 200, 716, 1062, 1154
Fsp4HI GCNGC 5 cut(s) 587, 612, 642, 1029, 1113
FspBI CTAG 3 cut(s) 567, 813, 1107
GlaI GCGC 2 cut(s) 161, 786
GluI GCNGC 5 cut(s) 587, 612, 642, 1029, 1113
HaeIII GGCC 4 cut(s) 437, 509, 950, 1388
HhaI GCGC 2 cut(s) 162, 787
Hin1II CATG 1 cut(s) 1288
Hin6I GCGC 2 cut(s) 160, 785
HinP1I GCGC 2 cut(s) 160, 785
HinfI GANTC 8 cut(s) 200, 349, 619, 790, 1006, 1128, 1363, 1398
HphI GGTGA 1 cut(s) 1394
Hpy166II GTNNAC 1 cut(s) 1152
Hpy188I TCNGA 6 cut(s) 172, 426, 1000, 1133, 1228, 1320
Hpy188III TCNNGA 7 cut(s) 353, 623, 794, 1010, 1107, 1167, 1199
Hpy8I GTNNAC 1 cut(s) 1152
HpyAV CCTTC 5 cut(s) 427, 447, 888, 1213, 1380
HpyCH4III ACNGT 7 cut(s) 275, 557, 655, 1042, 1086, 1149, 1257
HpyF10VI GCNNNNNNNGC 8 cut(s) 407, 416, 611, 641, 848, 857, 1028, 1240
HpyF3I CTNAG 3 cut(s) 15, 471, 1130
Hsp92II CATG 1 cut(s) 1288
HspAI GCGC 2 cut(s) 160, 785
KpnI GGTACC 1 cut(s) 300
Kzo9I GATC 5 cut(s) 82, 143, 355, 796, 1300
LmnI GCTCC 1 cut(s) 602
Lsp1109I GCAGC 4 cut(s) 623, 628, 1015, 1124
LweI GCATC 5 cut(s) 106, 178, 506, 628, 1015
MaeI CTAG 3 cut(s) 567, 813, 1107
MalI GATC 5 cut(s) 84, 145, 357, 798, 1302
MboI GATC 5 cut(s) 82, 143, 355, 796, 1300
MboII GAAGA 8 cut(s) 122, 300, 582, 628, 1062, 1064, 1214, 1358
MfeI CAATTG 1 cut(s) 223
MflI RGATCY 2 cut(s) 355, 796
MlyI GAGTC 4 cut(s) 628, 1015, 1122, 1357
MroXI GAANNNNTTC 3 cut(s) 218, 574, 778
MseI TTAA 3 cut(s) 132, 483, 924
MspA1I CMGCKG 2 cut(s) 635, 1022
MspR9I CCNGG 2 cut(s) 41, 583
MunI CAATTG 1 cut(s) 223
MvaI CCWGG 2 cut(s) 41, 583
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 8 cut(s) 407, 416, 611, 641, 848, 857, 1028, 1240
NdeI CATATG 3 cut(s) 74, 1048, 1192
NdeII GATC 5 cut(s) 82, 143, 355, 796, 1300
NlaIII CATG 1 cut(s) 1288
NlaIV GGNNCC 2 cut(s) 298, 682
NmeAIII GCCGAG 1 cut(s) 463
NspI RCATGY 1 cut(s) 1288
NspV TTCGAA 1 cut(s) 805
PdmI GAANNNNTTC 3 cut(s) 218, 574, 778
PfeI GAWTC 4 cut(s) 200, 349, 790, 1398
PkrI GCNGC 5 cut(s) 588, 613, 643, 1030, 1114
PleI GAGTC 4 cut(s) 627, 1014, 1122, 1357
PpsI GAGTC 4 cut(s) 627, 1014, 1122, 1357
PsiI TTATAA 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 39, 581
PspGI CCWGG 2 cut(s) 39, 581
PspN4I GGNNCC 2 cut(s) 298, 682
PstI CTGCAG 2 cut(s) 403, 844
PsuI RGATCY 2 cut(s) 355, 796
PvuII CAGCTG 2 cut(s) 635, 1022
RsaI GTAC 4 cut(s) 298, 592, 763, 1254
RsaNI GTAC 4 cut(s) 297, 591, 762, 1253
SaqAI TTAA 3 cut(s) 132, 483, 924
SatI GCNGC 5 cut(s) 587, 612, 642, 1029, 1113
Sau3AI GATC 5 cut(s) 82, 143, 355, 796, 1300
SchI GAGTC 4 cut(s) 628, 1015, 1122, 1357
ScrFI CCNGG 2 cut(s) 41, 583
SetI ASST 8 cut(s) 236, 458, 637, 677, 899, 1024, 1164, 1224
SfaNI GCATC 5 cut(s) 106, 178, 506, 628, 1015
SfcI CTRYAG 2 cut(s) 399, 840
SfuI TTCGAA 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 1289
SmoI CTYRAG 1 cut(s) 1289
SsiI CCGC 2 cut(s) 344, 586
SspI AATATT 1 cut(s) 1123
SspMI CTAG 3 cut(s) 567, 813, 1107
StyD4I CCNGG 2 cut(s) 39, 581
StyI CCWWGG 2 cut(s) 510, 951
TaaI ACNGT 7 cut(s) 275, 557, 655, 1042, 1086, 1149, 1257
TaqI TCGA 5 cut(s) 104, 286, 352, 793, 805
TatI WGTACW 1 cut(s) 1252
TauI GCSGC 1 cut(s) 589
TfiI GAWTC 4 cut(s) 200, 349, 790, 1398
Tru1I TTAA 3 cut(s) 132, 483, 924
Tru9I TTAA 3 cut(s) 132, 483, 924
TscAI CASTG 6 cut(s) 100, 153, 280, 562, 1089, 1245
TseI GCWGC 4 cut(s) 611, 641, 1028, 1112
TspDTI ATGAA 8 cut(s) 17, 35, 207, 726, 996, 1035, 1065, 1158
TspRI CASTG 6 cut(s) 100, 153, 280, 562, 1089, 1245
XapI RAATTY 4 cut(s) 63, 214, 245, 686
XbaI TCTAGA 1 cut(s) 1106
XceI RCATGY 1 cut(s) 1288
XmnI GAANNNNTTC 3 cut(s) 218, 574, 778
XspI CTAG 3 cut(s) 567, 813, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.