Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Reverse (-)

19000858 .. 19002765

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1083600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCAGTGATGGAGAAGCTCAGGATGTTCGTCGCTCAGGAGCCTGTCGTCGCAGCTTCTTGCCTCATCGCCGGCGTTGGACTCTTCCTTCCCGCTGTAGTAAGGCCAATTCTAGATTCCTTTGAAGCATCTAAGCAAGTCCCTCAGCCTGCTTTAAGTGATGTGGTTGCAGGTATGACAGGTAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

6.61

Weight (kDa)

7.92

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AciI	CCGC	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	2 cut(s)	19, 56
AluI	AGCT	2 cut(s)	19, 56
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	137
Bpu10I	CCTNAGC	3 cut(s)	20, 36, 144
Bse118I	RCCGGY	1 cut(s)	71
BseGI	GGATG	1 cut(s)	30
BseMII	CTCAG	3 cut(s)	34, 50, 158
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	3 cut(s)	33, 49, 157
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	73, 150
BstDEI	CTNAG	4 cut(s)	20, 36, 132, 144
BstF5I	GGATG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	106
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	73, 150
Cfr10I	RCCGGY	1 cut(s)	71
CviJI	RGCY	5 cut(s)	19, 43, 56, 106, 148
CviKI_1	RGCY	5 cut(s)	19, 43, 56, 106, 148
DdeI	CTNAG	4 cut(s)	20, 36, 132, 144
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
FaiI	YATR	1 cut(s)	176
FaqI	GGGAC	1 cut(s)	125
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	1 cut(s)	72
HinfI	GANTC	2 cut(s)	81, 116
HpaII	CCGG	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	22, 38, 113
Hpy99I	CGWCG	2 cut(s)	35, 53
HpyAV	CCTTC	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	170
HpyF3I	CTNAG	4 cut(s)	20, 36, 132, 144
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	7 cut(s)	7, 23, 57, 85, 156, 162, 165
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	113
MboII	GAAGA	1 cut(s)	76
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	2 cut(s)	74, 153
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	72
NaeI	GCCGGC	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	75
SetI	ASST	4 cut(s)	21, 58, 175, 184
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	96
SgrAI	CRCCGGYG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	1 cut(s)	113
TasI	AATT	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	1 cut(s)	12
XbaI	TCTAGA	1 cut(s)	112
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.