Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008496.1

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Reverse (-)

19958 .. 21157

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008496.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgccggggattagaacccaagtcttgaatcaagatatgtgttataagaaactgatggcaaagcaaccaagaaaagaagaggatacaagtttcaagaagaaagttcgaattatgtacactgatccctatgctactgattcttcgagtgaagatgatgagcaatgtaatgctactgagtatcaatctgtgcccagaaagaaggtatttgtttcggagattgtggttggtggcatgcaagatgaatcatgtgtgtctggaggtagaattggtaataccaataaatctgatggcagtaagaaaaatcatagatcctattctgtatataagggagttcggcgtagaaaatggggtaaatatgctgcagagattcgtgatccgtttcgaggggtacgggagtggattggcacttttgatactgcagaggaggcttctgttgcttatcaaaataggaggcttctgtttgataacatgaagttagagttaaagagaaagactgaatataaggacttgcaattatcaaatgaggcgtttaaaagttctcatttaacagttgagagcaatcatcagtatgagtgtcaaagctttcatttattgagggagagtcaggattcatcagtagctgctgctgctaatgaaaccttttcatatgaagagaccgcaagtttgttttgtcatccatcaccatcatctgtgcttgatatacctcctagtaaagctgcacttggtattcgactctccaatggggaggtttttcagccagaaggctctgtgcaaccgctttccaaagaagagctatccaatttgaaatttcctgaagtgccaatatcatcagcaataagtgctgaagaaggctacgtgcgaccactttctgaagaagagctatccgttttgaaatttcctgaagtgccaatatcatcagcaataattgctgaagaaggctctgttcaaccgctttctgaagaagagcatttcaatttgaaatttactcaagtgccaatattgtcaccaataagaaccgaagtttggggatttatgaatttgggatttgtagacaatgacatatttgatggtttggatcagtttgttggtaggagtgacatagttgatcttcctgtgcattgtcatggaaatggtgagaatatcagtcttcctcctagtaagtttctaatgagtgacttggcagggttttactgggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

399

Amino Acids

44.96

Weight (kDa)

5.21

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	1050
AciI	CCGC	3 cut(s)	657, 776, 950
AclWI	GGATC	4 cut(s)	116, 303, 368, 1083
AcsI	RAATTY	4 cut(s)	806, 893, 980, 1036
AcuI	CTGAAG	6 cut(s)	834, 864, 891, 921, 951, 978
AfaI	GTAC	2 cut(s)	116, 390
AfiI	CCNNNNNNNGG	2 cut(s)	383, 1023
AgsI	TTSAA	7 cut(s)	28, 94, 805, 892, 947, 973, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	1006, 1038
AluBI	AGCT	5 cut(s)	582, 620, 716, 793, 880
AluI	AGCT	5 cut(s)	582, 620, 716, 793, 880
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	4 cut(s)	116, 303, 368, 1083
AlwNI	CAGNNNCTG	1 cut(s)	620
ApeKI	GCWGC	5 cut(s)	359, 620, 623, 626, 716
ApoI	RAATTY	4 cut(s)	806, 893, 980, 1036
ArsI	GACNNNNNNTTYG	2 cut(s)	646, 678
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	3 cut(s)	672, 996, 1145
AsuII	TTCGAA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	192
BaeI	ACNNNNGTAYC	2 cut(s)	380, 413
BbsI	GAAGAC	1 cut(s)	1139
BbvI	GCAGC	5 cut(s)	346, 607, 610, 613, 703
BccI	CCATC	5 cut(s)	49, 281, 685, 691, 1061
BciVI	GTATCC	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	2 cut(s)	708, 1155
BfmI	CTRYAG	2 cut(s)	360, 417
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
BlsI	GCNGC	5 cut(s)	361, 622, 625, 628, 718
Bme1390I	CCNGG	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	1139
BpmI	CTGGAG	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	972
BpuMI	CCSGG	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	856
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 1023
Bse1I	ACTGG	1 cut(s)	1196
Bse3DI	GCAATG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	2 cut(s)	383, 1023
BseMI	GCAATG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	1196
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	5 cut(s)	346, 607, 610, 613, 703
BsgI	GTGCAG	1 cut(s)	702
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	383, 1023
BsmAI	GTCTC	1 cut(s)	647
Bso31I	GGTCTC	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	5 cut(s)	121, 308, 373, 1075, 1105
BspACI	CCGC	3 cut(s)	657, 776, 950
BspCNI	CTCAG	1 cut(s)	166
BspMAI	CTGCAG	2 cut(s)	364, 421
BspPI	GGATC	4 cut(s)	116, 303, 368, 1083
BspQI	GCTCTTC	3 cut(s)	783, 870, 957
BspT104I	TTCGAA	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	1196
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	5 cut(s)	121, 308, 373, 1075, 1105
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	5 cut(s)	72, 645, 783, 870, 957
BstAPI	GCANNNNNTGC	2 cut(s)	839, 926
BstAUI	TGTACA	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	856
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	673
BstKTI	GATC	5 cut(s)	124, 311, 376, 1078, 1108
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	5 cut(s)	121, 308, 373, 1075, 1105
BstMWI	GCNNNNNNNGC	5 cut(s)	425, 434, 626, 839, 926
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	2 cut(s)	360, 417
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	5 cut(s)	346, 607, 610, 613, 703
BstV2I	GAAGAC	1 cut(s)	1139
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	620
Csp6I	GTAC	2 cut(s)	115, 389
CviAII	CATG	4 cut(s)	232, 246, 469, 1124
CviQI	GTAC	2 cut(s)	115, 389
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	5 cut(s)	123, 310, 375, 1077, 1107
DpnII	GATC	5 cut(s)	121, 308, 373, 1075, 1105
DraI	TTTAAA	1 cut(s)	532
Eam1104I	CTCTTC	5 cut(s)	72, 645, 783, 870, 957
EarI	CTCTTC	5 cut(s)	72, 645, 783, 870, 957
Eco31I	GGTCTC	1 cut(s)	647
Eco57I	CTGAAG	6 cut(s)	834, 864, 891, 921, 951, 978
FaeI	CATG	4 cut(s)	235, 249, 472, 1127
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FatI	CATG	4 cut(s)	231, 245, 468, 1123
FauNDI	CATATG	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
FokI	GGATG	1 cut(s)	660
Fsp4HI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
FspBI	CTAG	2 cut(s)	708, 1155
GluI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
GsuI	CTGGAG	1 cut(s)	276
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	4 cut(s)	235, 249, 472, 1127
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	7 cut(s)	28, 137, 242, 367, 601, 608, 732
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	3 cut(s)	672, 996, 1145
Hpy166II	GTNNAC	2 cut(s)	117, 1051
Hpy188I	TCNGA	4 cut(s)	214, 286, 871, 958
Hpy188III	TCNNGA	8 cut(s)	25, 32, 94, 255, 371, 605, 812, 899
Hpy8I	GTNNAC	2 cut(s)	117, 1051
HpyAV	CCTTC	4 cut(s)	193, 755, 842, 929
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	7 cut(s)	235, 362, 419, 511, 719, 772, 1117
HpyF10VI	GCNNNNNNNGC	5 cut(s)	425, 434, 626, 839, 926
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	855
Hsp92II	CATG	4 cut(s)	235, 249, 472, 1127
Kzo9I	GATC	5 cut(s)	121, 308, 373, 1075, 1105
LguI	GCTCTTC	3 cut(s)	783, 870, 957
Lsp1109I	GCAGC	5 cut(s)	346, 607, 610, 613, 703
MaeI	CTAG	2 cut(s)	708, 1155
MaeII	ACGT	1 cut(s)	855
MaeIII	GTNAC	3 cut(s)	1002, 1094, 1172
MalI	GATC	5 cut(s)	123, 310, 375, 1077, 1107
MboI	GATC	5 cut(s)	121, 308, 373, 1075, 1105
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	610, 726
MseI	TTAA	3 cut(s)	482, 531, 545
MslI	CAYNNNNRTG	3 cut(s)	567, 1122, 1128
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	5 cut(s)	425, 434, 626, 839, 926
NciI	CCSGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	5 cut(s)	121, 308, 373, 1075, 1105
NlaIII	CATG	4 cut(s)	235, 249, 472, 1127
NmuCI	GTSAC	3 cut(s)	1002, 1094, 1172
NspI	RCATGY	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	106
PaeI	GCATGC	1 cut(s)	235
PciSI	GCTCTTC	3 cut(s)	783, 870, 957
PfeI	GAWTC	5 cut(s)	28, 137, 242, 367, 608
PkrI	GCNGC	5 cut(s)	361, 622, 625, 628, 718
PleI	GAGTC	2 cut(s)	609, 726
PpsI	GAGTC	2 cut(s)	609, 726
Ppu21I	YACGTR	1 cut(s)	856
PsiI	TTATAA	1 cut(s)	45
PstI	CTGCAG	2 cut(s)	364, 421
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	2 cut(s)	116, 390
RsaNI	GTAC	2 cut(s)	115, 389
RseI	CAYNNNNRTG	3 cut(s)	567, 1122, 1128
SapI	GCTCTTC	3 cut(s)	783, 870, 957
SaqAI	TTAA	3 cut(s)	482, 531, 545
SatI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
Sau3AI	GATC	5 cut(s)	121, 308, 373, 1075, 1105
SchI	GAGTC	2 cut(s)	610, 726
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	192
SfcI	CTRYAG	2 cut(s)	360, 417
SfuI	TTCGAA	1 cut(s)	106
SmiMI	CAYNNNNRTG	3 cut(s)	567, 1122, 1128
SmlI	CTYRAG	1 cut(s)	987
SmoI	CTYRAG	1 cut(s)	987
SphI	GCATGC	1 cut(s)	235
SsiI	CCGC	3 cut(s)	657, 776, 950
SspI	AATATT	1 cut(s)	999
SspMI	CTAG	2 cut(s)	708, 1155
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	4 cut(s)	106, 143, 382, 730
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	5 cut(s)	28, 137, 242, 367, 608
Tru1I	TTAA	3 cut(s)	482, 531, 545
Tru9I	TTAA	3 cut(s)	482, 531, 545
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	3 cut(s)	1002, 1094, 1172
TseI	GCWGC	5 cut(s)	359, 620, 623, 626, 716
Tsp45I	GTSAC	3 cut(s)	1002, 1094, 1172
TspDTI	ATGAA	8 cut(s)	255, 485, 575, 600, 633, 648, 663, 1049
TspGWI	ACGGA	2 cut(s)	366, 874
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	4 cut(s)	806, 893, 980, 1036
XceI	RCATGY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	1050
XspI	CTAG	2 cut(s)	708, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.