Rh7CG073500

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002102
Physical Location & Seq
Forward (+)
5258914 .. 5261446
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG073500.1

Sequence Viewer

Length: 1203 bp
ATGCCGGGGATTAGAACCCAAGTCTTGAATCAAGATATGTGTTGTAAGAAACTGATGGCAAAGCAACCAAGAAAGGAAGAGGATACAAGTTTCAAGAAGAAAGTTCGAATTATGTACACTGATCCCTATGCTACTGATTCTTCGAGTGAAGATGATGAGCAATGTAATGCTAATGAGTATCAATCTGTGCCCAGAAAGAAGGTCTTTGTTTCGGAGATTGTGGTTGGTGGCATGCAAGATGAATCATGTGTGTCTGGAGGTAGAATTGGTAATACCAATAAATCTGATGGCAGTAAGAAAAATCATAGATCCTATTCTGTATATAAGGGAGTTCGGCGTAGAAAATGGGGTAAATTTGCTGCAGAGATTCGTGATCCGTTTCGAGGGGTACGGGAGTGGATTGGCACTTTTGATACTGCAGAGGAGGCTTCTGTTGCTTATCAAAATAGGAGGCTTCTATTTGATAACATGAAGTTAGAGTTAAAGAGAGAGACTGAATATAAGGACTTGCAATTATCAAATGAGGCGTTTAAGAGTTCTCATTTAACAGTTGAGAGCAATCATCAGTATGAGTGTCAAAGCTTTCATTTATTGAGGGAGAGTCAGGATTCATCAGTAGCTGCTGCTGCTAATGAAACCTTTTCATATGAAGAGACCGCAAGTTTGTTTTGTCATCCATCACCATCATCTGTGCTTGATATACCTCCTAGTAAAGGTGCACTTGGTATTCGACTCTCCAATGGGGAGGTCTTTCAGCCAGAAGGCTCTGTGCAACCGCTTTCCAAAGAAGAGCTATCCAATTTGAAATTTCCTGAAGTGCCAATATCATCAGCAATAAGTGCTGAAGAAGGCTACGCGCAACCACTTTCTGAAGAAGAGCTATCCGTTTTGAAATTTCCTGAAGTGCCAATATCATCAGCAATAATTGCTGAAGAAGGCTCTGTTCAACCGCTTTCTGAAGAAGAGCATTTCAATTTGAAATTTAGTCAAGTGCCAATATTGTCACCAATAAGAACTGAAGTTTGGGGATTTATGAATTTGGGATTTGTGGACAATGACATATTTGATGGTTTGGATCAGTTGTTTGTTGGTAGGAGTGACATAGTTGAGCTTCCTGTGCATTGTCATGGAAATGGTGAGAATATCAGTCTTCCTCCTAGTAAGTTTCTTATGAGTGACTTGGCAGGTTTTTGCTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

400

Amino Acids

44.88

Weight (kDa)

5.07

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 106 - 148 6.4e-08 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1175
AccII CGCG 1 cut(s) 857
AciI CCGC 3 cut(s) 657, 776, 950
AclWI GGATC 4 cut(s) 116, 303, 368, 1083
AcsI RAATTY 5 cut(s) 353, 806, 893, 980, 1036
AcuI CTGAAG 7 cut(s) 834, 864, 891, 921, 951, 978, 1038
AfaI GTAC 2 cut(s) 116, 390
AfiI CCNNNNNNNGG 2 cut(s) 383, 713
AgsI TTSAA 7 cut(s) 28, 94, 805, 892, 947, 973, 979
AjuI GAANNNNNNNTTGG 2 cut(s) 1006, 1038
AluBI AGCT 5 cut(s) 582, 620, 793, 880, 1111
AluI AGCT 5 cut(s) 582, 620, 793, 880, 1111
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 2 cut(s) 485, 647
Alw44I GTGCAC 1 cut(s) 717
AlwI GGATC 4 cut(s) 116, 303, 368, 1083
AlwNI CAGNNNCTG 1 cut(s) 620
ApaLI GTGCAC 1 cut(s) 717
ApeKI GCWGC 4 cut(s) 359, 620, 623, 626
ApoI RAATTY 5 cut(s) 353, 806, 893, 980, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
AspLEI GCGC 1 cut(s) 859
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 3 cut(s) 672, 996, 1148
AsuII TTCGAA 1 cut(s) 106
BaeGI GKGCMC 2 cut(s) 192, 721
BaeI ACNNNNGTAYC 2 cut(s) 380, 413
BbsI GAAGAC 1 cut(s) 1142
Bbv12I GWGCWC 1 cut(s) 721
BbvI GCAGC 4 cut(s) 346, 607, 610, 613
BccI CCATC 5 cut(s) 49, 281, 685, 691, 1061
BciVI GTATCC 1 cut(s) 76
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 485, 647
BfaI CTAG 2 cut(s) 708, 1158
BfmI CTRYAG 2 cut(s) 360, 417
BfuAI ACCTGC 1 cut(s) 1175
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 4 cut(s) 360, 621, 624, 627
BlsI GCNGC 4 cut(s) 361, 622, 625, 628
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 1142
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 713
Bse3DI GCAATG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 2 cut(s) 383, 713
BseMI GCAATG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 437
BseSI GKGCMC 2 cut(s) 192, 721
BseXI GCAGC 4 cut(s) 346, 607, 610, 613
BseYI CCCAGC 1 cut(s) 1194
Bsh1236I CGCG 1 cut(s) 857
BsiHKAI GWGCWC 1 cut(s) 721
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 383, 713
BsmAI GTCTC 2 cut(s) 485, 647
Bso31I GGTCTC 1 cut(s) 647
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 192, 721
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 4 cut(s) 121, 308, 373, 1075
BspACI CCGC 3 cut(s) 657, 776, 950
BspFNI CGCG 1 cut(s) 857
BspMAI CTGCAG 2 cut(s) 364, 421
BspMI ACCTGC 1 cut(s) 1175
BspPI GGATC 4 cut(s) 116, 303, 368, 1083
BspQI GCTCTTC 3 cut(s) 783, 870, 957
BspT104I TTCGAA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 4 cut(s) 121, 308, 373, 1075
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 5 cut(s) 72, 645, 783, 870, 957
BstAPI GCANNNNNTGC 2 cut(s) 839, 926
BstAUI TGTACA 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 233
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 1 cut(s) 673
BstFNI CGCG 1 cut(s) 857
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 4 cut(s) 124, 311, 376, 1078
BstMAI GTCTC 2 cut(s) 485, 647
BstMBI GATC 4 cut(s) 121, 308, 373, 1075
BstMWI GCNNNNNNNGC 6 cut(s) 425, 434, 626, 839, 926, 1117
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 2 cut(s) 360, 417
BstSLI GKGCMC 2 cut(s) 192, 721
BstUI CGCG 1 cut(s) 857
BstV1I GCAGC 4 cut(s) 346, 607, 610, 613
BstV2I GAAGAC 1 cut(s) 1142
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuI GTATCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 673
BtsIMutI CAGTG 1 cut(s) 117
BveI ACCTGC 1 cut(s) 1175
Cac8I GCNNGC 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 620
CfoI GCGC 1 cut(s) 859
Csp6I GTAC 2 cut(s) 115, 389
CviAII CATG 4 cut(s) 232, 246, 469, 1127
CviQI GTAC 2 cut(s) 115, 389
DpnI GATC 4 cut(s) 123, 310, 375, 1077
DpnII GATC 4 cut(s) 121, 308, 373, 1075
Eam1104I CTCTTC 5 cut(s) 72, 645, 783, 870, 957
EarI CTCTTC 5 cut(s) 72, 645, 783, 870, 957
Eco31I GGTCTC 1 cut(s) 647
Eco57I CTGAAG 7 cut(s) 834, 864, 891, 921, 951, 978, 1038
EcoNI CCTNNNNNAGG 1 cut(s) 711
FaeI CATG 4 cut(s) 235, 249, 472, 1130
FalI AAGNNNNNCTT 4 cut(s) 188, 220, 705, 737
FatI CATG 4 cut(s) 231, 245, 468, 1126
FauNDI CATATG 1 cut(s) 646
Fnu4HI GCNGC 4 cut(s) 360, 621, 624, 627
FokI GGATG 1 cut(s) 660
Fsp4HI GCNGC 4 cut(s) 360, 621, 624, 627
FspBI CTAG 2 cut(s) 708, 1158
GlaI GCGC 1 cut(s) 858
GluI GCNGC 4 cut(s) 360, 621, 624, 627
GsaI CCCAGC 1 cut(s) 1198
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 859
Hin1II CATG 4 cut(s) 235, 249, 472, 1130
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 7 cut(s) 28, 137, 242, 367, 601, 608, 732
HpaII CCGG 1 cut(s) 5
HphI GGTGA 3 cut(s) 672, 996, 1148
Hpy166II GTNNAC 3 cut(s) 117, 719, 1051
Hpy188I TCNGA 4 cut(s) 214, 286, 871, 958
Hpy188III TCNNGA 8 cut(s) 25, 32, 94, 255, 371, 605, 812, 899
Hpy8I GTNNAC 3 cut(s) 117, 719, 1051
HpyAV CCTTC 4 cut(s) 193, 755, 842, 929
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4V TGCA 7 cut(s) 235, 362, 419, 511, 719, 772, 1120
HpyF10VI GCNNNNNNNGC 6 cut(s) 425, 434, 626, 839, 926, 1117
Hsp92II CATG 4 cut(s) 235, 249, 472, 1130
HspAI GCGC 1 cut(s) 857
Kzo9I GATC 4 cut(s) 121, 308, 373, 1075
LguI GCTCTTC 3 cut(s) 783, 870, 957
Lsp1109I GCAGC 4 cut(s) 346, 607, 610, 613
MaeI CTAG 2 cut(s) 708, 1158
MaeIII GTNAC 3 cut(s) 1002, 1097, 1175
MalI GATC 4 cut(s) 123, 310, 375, 1077
MboI GATC 4 cut(s) 121, 308, 373, 1075
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 2 cut(s) 192, 721
MlyI GAGTC 2 cut(s) 610, 726
MseI TTAA 3 cut(s) 482, 531, 545
MslI CAYNNNNRTG 3 cut(s) 567, 1125, 1131
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 857
MwoI GCNNNNNNNGC 6 cut(s) 425, 434, 626, 839, 926, 1117
NciI CCSGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 646
NdeII GATC 4 cut(s) 121, 308, 373, 1075
NlaIII CATG 4 cut(s) 235, 249, 472, 1130
NmuCI GTSAC 3 cut(s) 1002, 1097, 1175
NspI RCATGY 1 cut(s) 235
NspV TTCGAA 1 cut(s) 106
PaeI GCATGC 1 cut(s) 235
PciSI GCTCTTC 3 cut(s) 783, 870, 957
PfeI GAWTC 5 cut(s) 28, 137, 242, 367, 608
PkrI GCNGC 4 cut(s) 361, 622, 625, 628
PleI GAGTC 2 cut(s) 609, 726
PpsI GAGTC 2 cut(s) 609, 726
PspFI CCCAGC 1 cut(s) 1194
PstI CTGCAG 2 cut(s) 364, 421
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 2 cut(s) 116, 390
RsaNI GTAC 2 cut(s) 115, 389
RseI CAYNNNNRTG 3 cut(s) 567, 1125, 1131
SapI GCTCTTC 3 cut(s) 783, 870, 957
SaqAI TTAA 3 cut(s) 482, 531, 545
SatI GCNGC 4 cut(s) 360, 621, 624, 627
Sau3AI GATC 4 cut(s) 121, 308, 373, 1075
SchI GAGTC 2 cut(s) 610, 726
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 2 cut(s) 192, 721
SfcI CTRYAG 2 cut(s) 360, 417
SfuI TTCGAA 1 cut(s) 106
SmiMI CAYNNNNRTG 3 cut(s) 567, 1125, 1131
SphI GCATGC 1 cut(s) 235
SsiI CCGC 3 cut(s) 657, 776, 950
SspI AATATT 1 cut(s) 999
SspMI CTAG 2 cut(s) 708, 1158
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 1 cut(s) 550
TaqI TCGA 4 cut(s) 106, 143, 382, 730
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 5 cut(s) 28, 137, 242, 367, 608
Tru1I TTAA 3 cut(s) 482, 531, 545
Tru9I TTAA 3 cut(s) 482, 531, 545
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 3 cut(s) 1002, 1097, 1175
TseI GCWGC 4 cut(s) 359, 620, 623, 626
Tsp45I GTSAC 3 cut(s) 1002, 1097, 1175
TspDTI ATGAA 8 cut(s) 255, 485, 575, 600, 633, 648, 663, 1049
TspGWI ACGGA 2 cut(s) 366, 874
TspRI CASTG 1 cut(s) 124
VneI GTGCAC 1 cut(s) 717
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 5 cut(s) 353, 806, 893, 980, 1036
XceI RCATGY 1 cut(s) 235
XspI CTAG 2 cut(s) 708, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.