Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002102

Physical Location & Seq

Genomic Coordinates Reverse (-)

38711415 .. 38713661

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0274900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCGTCGTCGTCGTCATCGGAGGAGGAAGCAGACTCTGAATCTCCGATCATCATGTCATCGTCTTCGTTGTCGTCGTCGTCCTCATCGGAGAAGAAGGAAACTCTGTTGTTTCATGTGGAGCTGAACGAAGTCCGTCTTCTCCAGAAGGCCTTGAGACCCCTGCGTGAGACTGCCTACTTCCCGGACGACATTTCCCTCGCCGGAAAGATCCGCGACTCCGGCCACTTCTGCATATCTCCGGACGGGGTTCTTATCGCCTCCACAACCTCTTTCCCGCCTCATCTTGACGCCTATCTCGAACTGCCGCGTGCGACCTTCGCCGCCCTTCGCTGCCACAAGGACCATGTGCTCCGCCTCAACCTCCGCCTCTTGGAGGACCGAATCGCCGCCACCACCGTCAACGGTTGTGATGGTGTTTCTGCATGCTTCTCCGGAGAGAAGTACAGGCACAGCGCCTTGCTCTATTCTCTGAGGAACAAGGAAGGTTTTGCCGCGCACAGCTCTGAGATACCGCTCATTTGCTCCTATCCCGGTTTTCTGGCGACGTTAGATTGGTCAGACTACAGTTATCAACTCAGCATTGAGATGCCGACGGAGACTTTTAAGCAACTTATCAATTCTTTGAGCTTGTATGGGTTTGCAGTTCGTGCCACCGTGACAATTACTCAAATCATGTTCTGTGTAGTCAATGAGGAGGTTGTTCTGAGGGCAGAGGCTGAGGTCTACAAGATTCTGCGTTCGAGAAGTCGATATCCGTATTTGTTGGAATTTGGTCTGCATCAAAAGAGTGTATTCCTGAATGCGGCGAGTCTATCAGACAGAGTTAGGCTTCACCAGCTTTTGGATTTACGCACTGTGTTGGAGGTACCTGTTAAGGGACTCGTAGATGTTGCAGAATCTGTCTCCATCACCGTTGTTGACAACATCTTTGTCGTGTTGGAACTTGGAAGTAGCTTACCTCCACCTCATCTTGATTGTACCTTAACCCTGCTTGGTCAGCTTATACACCTTAGAATGCATAGGAAAAGAAACATAACCATGTCAAACTCATTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

353

Amino Acids

39.36

Weight (kDa)

6.07

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46540
fragaria_vesca	FvH4_5g12250 FvH4_5g12250 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860 FvH4_7g16860
malus_domestica	MD01G1083600.v1.1 MD06G1215500.v1.1 MD07G1152300.v1.1 MD14G1226300.v1.1
prunus_persica	Prupe.2G190600_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1 Prupe.5G220700_v2.0.a1
pyrus_communis	pycom06g19220 pycom07g15040 pycom14g18770
rosa_chinensis	RchiOBHm_Chr1g0360081 RchiOBHm_Chr7g0185311
rosa_laevigata	RLG00000004923 RLG00000027834
rosa_multiflora	Rmu_sc0008496.1_g000007 Rmu_ssc0000368.1_g000039
rosa_roxburghii	Rroxscaffold_3G00269050 Rroxscaffold_4G00296390
rosa_rugosa	Rorug01G0274800 Rorug01G0274900 Rorug01G0275000 Rorug06G0467900
rosa_samantha	Rh1AG288800 Rh1BG254300 Rh1CG271800 Rh1DG283400 Rh7AG074800 Rh7BG072400 Rh7CG073500 Rh7DG073000
rosa_wichuraiana	Rw1G025610 Rw5G036450 Rw7G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	868
AccB1I	GGYRCC	1 cut(s)	868
AccB7I	CCANNNNNTGG	1 cut(s)	844
AccBSI	CCGCTC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	726
AccII	CGCG	3 cut(s)	216, 310, 497
AccIII	TCCGGA	2 cut(s)	241, 434
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	770
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	3 cut(s)	446, 870, 982
AfiI	CCNNNNNNNGG	5 cut(s)	373, 376, 805, 844, 878
AluBI	AGCT	6 cut(s)	124, 504, 630, 841, 957, 1003
AluI	AGCT	6 cut(s)	124, 504, 630, 841, 957, 1003
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	4 cut(s)	151, 164, 593, 910
AlwI	GGATC	1 cut(s)	205
AlwNI	CAGNNNCTG	3 cut(s)	38, 719, 902
Aor13HI	TCCGGA	2 cut(s)	241, 434
AoxI	GGCC	2 cut(s)	150, 223
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	770
ArsI	GACNNNNNNTTYG	2 cut(s)	914, 946
Asp718I	GGTACC	1 cut(s)	868
AspLEI	GCGC	2 cut(s)	458, 499
AspS9I	GGNCC	2 cut(s)	343, 379
AsuC2I	CCSGG	2 cut(s)	185, 534
AsuHPI	GGTGA	2 cut(s)	827, 904
AvaII	GGWCC	2 cut(s)	343, 379
BanI	GGYRCC	1 cut(s)	868
BbsI	GAAGAC	2 cut(s)	57, 131
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	2 cut(s)	407, 917
BcnI	CCSGG	2 cut(s)	185, 534
BcoDI	GTCTC	4 cut(s)	151, 164, 593, 910
BfmI	CTRYAG	1 cut(s)	565
BfoI	RGCGCY	1 cut(s)	459
BisI	GCNGC	6 cut(s)	308, 324, 334, 390, 495, 807
BlsI	GCNGC	6 cut(s)	309, 325, 335, 391, 496, 808
Bme1390I	CCNGG	2 cut(s)	185, 534
Bme18I	GGWCC	2 cut(s)	343, 379
BmgT120I	GGNCC	2 cut(s)	343, 379
BmiI	GGNNCC	1 cut(s)	870
BmrFI	CCNGG	2 cut(s)	185, 534
BmsI	GCATC	2 cut(s)	579, 790
BpiI	GAAGAC	2 cut(s)	57, 131
BpmI	CTGGAG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	175
BpuMI	CCSGG	2 cut(s)	185, 534
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	151
BsaWI	WCCGGW	2 cut(s)	241, 434
Bsc4I	CCNNNNNNNGG	5 cut(s)	373, 376, 805, 844, 878
BseAI	TCCGGA	2 cut(s)	241, 434
BseLI	CCNNNNNNNGG	5 cut(s)	373, 376, 805, 844, 878
BseMII	CTCAG	5 cut(s)	464, 498, 592, 698, 711
BseRI	GAGGAG	2 cut(s)	38, 710
BseXI	GCAGC	1 cut(s)	320
Bsh1236I	CGCG	3 cut(s)	216, 310, 497
BshFI	GGCC	2 cut(s)	152, 225
BshNI	GGYRCC	1 cut(s)	868
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	6 cut(s)	185, 204, 222, 242, 435, 534
BslFI	GGGAC	1 cut(s)	894
BslI	CCNNNNNNNGG	5 cut(s)	373, 376, 805, 844, 878
BsmAI	GTCTC	4 cut(s)	151, 164, 593, 910
BsmFI	GGGAC	1 cut(s)	894
BsmI	GAATGC	2 cut(s)	808, 1023
BsnI	GGCC	2 cut(s)	152, 225
Bso31I	GGTCTC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp13I	TCCGGA	2 cut(s)	241, 434
Bsp143I	GATC	2 cut(s)	48, 210
BspANI	GGCC	2 cut(s)	152, 225
BspCNI	CTCAG	5 cut(s)	465, 499, 591, 699, 712
BspEI	TCCGGA	2 cut(s)	241, 434
BspFNI	CGCG	3 cut(s)	216, 310, 497
BspLI	GGNNCC	1 cut(s)	870
BspPI	GGATC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	868
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	517
BssMI	GATC	2 cut(s)	48, 210
BssNI	GRCGYC	1 cut(s)	291
Bst4CI	ACNGT	6 cut(s)	400, 407, 569, 658, 859, 916
BstACI	GRCGYC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	312, 427
BstDEI	CTNAG	6 cut(s)	473, 507, 578, 707, 720, 1013
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstFNI	CGCG	3 cut(s)	216, 310, 497
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	2 cut(s)	458, 499
BstKTI	GATC	2 cut(s)	51, 213
BstMAI	GTCTC	4 cut(s)	151, 164, 593, 910
BstMBI	GATC	2 cut(s)	48, 210
BstMWI	GCNNNNNNNGC	6 cut(s)	222, 231, 320, 650, 838, 1000
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	183, 532
BstSFI	CTRYAG	1 cut(s)	565
BstUI	CGCG	3 cut(s)	216, 310, 497
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	2 cut(s)	57, 131
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	152, 225
BtsIMutI	CAGTG	1 cut(s)	855
Cac8I	GCNNGC	2 cut(s)	312, 427
CaiI	CAGNNNCTG	3 cut(s)	38, 719, 902
CfoI	GCGC	2 cut(s)	458, 499
Cfr13I	GGNCC	2 cut(s)	343, 379
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	3 cut(s)	445, 869, 981
CviAII	CATG	6 cut(s)	55, 116, 347, 426, 676, 1042
CviQI	GTAC	3 cut(s)	445, 869, 981
DdeI	CTNAG	6 cut(s)	473, 507, 578, 707, 720, 1013
DpnI	GATC	2 cut(s)	50, 212
DpnII	GATC	2 cut(s)	48, 210
EaeI	YGGCCR	1 cut(s)	223
EciI	GGCGGA	2 cut(s)	344, 356
Eco147I	AGGCCT	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	343, 379
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoRV	GATATC	1 cut(s)	755
EcoT22I	ATGCAT	1 cut(s)	1023
FaeI	CATG	6 cut(s)	58, 119, 350, 429, 679, 1045
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	1 cut(s)	894
FatI	CATG	6 cut(s)	54, 115, 346, 425, 675, 1041
FauI	CCCGC	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	6 cut(s)	308, 324, 334, 390, 495, 807
Fsp4HI	GCNGC	6 cut(s)	308, 324, 334, 390, 495, 807
GlaI	GCGC	2 cut(s)	457, 498
GluI	GCNGC	6 cut(s)	308, 324, 334, 390, 495, 807
GsuI	CTGGAG	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	152, 225
HapII	CCGG	6 cut(s)	185, 204, 222, 242, 435, 534
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	2 cut(s)	458, 499
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	6 cut(s)	58, 119, 350, 429, 679, 1045
Hin6I	GCGC	2 cut(s)	456, 497
HinP1I	GCGC	2 cut(s)	456, 497
HincII	GTYRAC	2 cut(s)	403, 922
HindII	GTYRAC	2 cut(s)	403, 922
HinfI	GANTC	8 cut(s)	35, 41, 218, 384, 733, 811, 882, 899
HpaII	CCGG	6 cut(s)	185, 204, 222, 242, 435, 534
HphI	GGTGA	2 cut(s)	827, 904
Hpy166II	GTNNAC	3 cut(s)	403, 727, 922
Hpy188I	TCNGA	9 cut(s)	22, 40, 48, 91, 474, 508, 562, 708, 820
Hpy188III	TCNNGA	8 cut(s)	145, 242, 287, 299, 435, 744, 799, 974
Hpy8I	GTNNAC	3 cut(s)	403, 727, 922
Hpy99I	CGWCG	7 cut(s)	10, 13, 16, 79, 82, 550, 598
HpyAV	CCTTC	5 cut(s)	91, 142, 328, 338, 479
HpyCH4III	ACNGT	6 cut(s)	400, 407, 569, 658, 859, 916
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	6 cut(s)	234, 425, 644, 781, 896, 1021
HpyF10VI	GCNNNNNNNGC	6 cut(s)	222, 231, 320, 650, 838, 1000
HpyF3I	CTNAG	6 cut(s)	473, 507, 578, 707, 720, 1013
HpySE526I	ACGT	1 cut(s)	548
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	6 cut(s)	58, 119, 350, 429, 679, 1045
HspAI	GCGC	2 cut(s)	456, 497
Kpn2I	TCCGGA	2 cut(s)	241, 434
KpnI	GGTACC	1 cut(s)	872
Kzo9I	GATC	2 cut(s)	48, 210
LmnI	GCTCC	3 cut(s)	121, 357, 530
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	2 cut(s)	579, 790
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	2 cut(s)	50, 212
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	2 cut(s)	48, 210
MboII	GAAGA	3 cut(s)	57, 106, 131
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	619, 663, 770
MlyI	GAGTC	4 cut(s)	29, 212, 820, 876
MmeI	TCCRAC	3 cut(s)	747, 843, 921
Mph1103I	ATGCAT	1 cut(s)	1023
MroI	TCCGGA	2 cut(s)	241, 434
MseI	TTAA	3 cut(s)	606, 876, 986
MslI	CAYNNNNRTG	2 cut(s)	587, 1040
MspI	CCGG	6 cut(s)	185, 204, 222, 242, 435, 534
MspR9I	CCNGG	2 cut(s)	185, 534
Mva1269I	GAATGC	2 cut(s)	808, 1023
MvnI	CGCG	3 cut(s)	216, 310, 497
MwoI	GCNNNNNNNGC	6 cut(s)	222, 231, 320, 650, 838, 1000
NciI	CCSGG	2 cut(s)	185, 534
NdeII	GATC	2 cut(s)	48, 210
NlaIII	CATG	6 cut(s)	58, 119, 350, 429, 679, 1045
NlaIV	GGNNCC	1 cut(s)	870
NmuCI	GTSAC	1 cut(s)	658
NsiI	ATGCAT	1 cut(s)	1023
NspI	RCATGY	1 cut(s)	429
PaeI	GCATGC	1 cut(s)	429
PceI	AGGCCT	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 74, 297
PctI	GAATGC	2 cut(s)	808, 1023
PfeI	GAWTC	4 cut(s)	41, 384, 733, 899
PflMI	CCANNNNNTGG	1 cut(s)	844
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	6 cut(s)	309, 325, 335, 391, 496, 808
PleI	GAGTC	4 cut(s)	29, 212, 819, 876
PpsI	GAGTC	4 cut(s)	29, 212, 819, 876
PspN4I	GGNNCC	1 cut(s)	870
PspPI	GGNCC	2 cut(s)	343, 379
PstNI	CAGNNNCTG	3 cut(s)	38, 719, 902
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	3 cut(s)	446, 870, 982
RsaNI	GTAC	3 cut(s)	445, 869, 981
RseI	CAYNNNNRTG	2 cut(s)	587, 1040
SaqAI	TTAA	3 cut(s)	606, 876, 986
SatI	GCNGC	6 cut(s)	308, 324, 334, 390, 495, 807
Sau3AI	GATC	2 cut(s)	48, 210
Sau96I	GGNCC	2 cut(s)	343, 379
SchI	GAGTC	4 cut(s)	29, 212, 820, 876
ScrFI	CCNGG	2 cut(s)	185, 534
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	2 cut(s)	579, 790
SfcI	CTRYAG	1 cut(s)	565
SinI	GGWCC	2 cut(s)	343, 379
SmiMI	CAYNNNNRTG	2 cut(s)	587, 1040
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
SphI	GCATGC	1 cut(s)	429
Sse9I	AATT	3 cut(s)	619, 663, 770
SseBI	AGGCCT	1 cut(s)	152
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	183, 532
TaaI	ACNGT	6 cut(s)	400, 407, 569, 658, 859, 916
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	3 cut(s)	300, 743, 751
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	619, 663, 770
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	5 cut(s)	310, 326, 392, 497, 809
TfiI	GAWTC	4 cut(s)	41, 384, 733, 899
Tru1I	TTAA	3 cut(s)	606, 876, 986
Tru9I	TTAA	3 cut(s)	606, 876, 986
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	1 cut(s)	104
TspGWI	ACGGA	3 cut(s)	125, 611, 747
TspRI	CASTG	1 cut(s)	862
Van91I	CCANNNNNTGG	1 cut(s)	844
VpaK11BI	GGWCC	2 cut(s)	343, 379
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	1 cut(s)	770
XceI	RCATGY	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	726
Zsp2I	ATGCAT	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.