FvH4_5g14560

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
8247710 .. 8253050
5341 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14560.t1

Sequence Viewer

Length: 1611 bp
ATGGATCATCATAAGGAGCTCAATTTGAACAAAGGACCTGAAGTTTGCGGCGGCGGCGGCGGCGGTGAGGGGTTTATAGATAGGAGCAAGGTGAGGATTTTGCTCTGCGATAACGACGAGTCGAGCTCCGAAGAAGTTCTTAGGCTTCTTCTGAAATGCTCTTATCAAGTTACTTCGGTGAAGTCTCCTCGGCAAGTGATCGATGCATTGAATGCGGAGGGACCTGATATTGATATCATACTTGCTGAAGTTGACCTTCCAATGAGAAAAGGGACAAGAATGTTGAAGTACATCACCCGACATAGAGAGTTGAGGCGCATTCCTGTGATCATGATGTCGGCACAGGATGAGGTATCTACTGTTGTTAAGTGCCTGAGGCTTGGAGCGGCAGACTATCTTGTAAAGCCTTTACGAACTAATGAGCTTCTGAACTTGTGGACACACATGTGGAGAAGAAGACACATGCTTGGACTTGCAGAGAAGAACGTGTTGAGTTATGACTTCGATACGGTGGTATCAGATCCTAGTGATCCTAATACGAACTCATTCTCGGATGATACAGAAGATAAGTCTCAGAAGAATGCCGATCCAGAGATATCTGCGGCTGCTGTTGCTGCTGCTACGGAGCCTCCACTGGATGATCAATTAGAGTTTCAGAGTGATGTTCCAGAAATAAGTGACCGCCAAACTGGAAAGTTTTCATCAGGCCCAAAAAAGAGCGGACTAAAGATTGGGGGGTCATCTGCCTTCTTTACCTATGTCAAATCAAGCACACTTGAGAACAACTCCCAAGTCCATACGAAGGATAATGGTTCTGAACGGTCAAGAGTGGAAGAGACACATCCAGCATGTAAACAAGTGGTTGATGAATCTCCTCAAGTAGATGGAAATGGAGAAGCATGGGAAAGCTATTCACAAGAAGATGACTTTCCAACCAGTAATAGCATCCCAGATTCTCTTTCATTGGAGAGGTCTTGCACCCCACCTGGATCAATGGAACTTCAGCATCAAAAGAATAATGAGGAAGACAGGTCCTCTCAAGTGCCTGAGCATCCAAGAAACGAACATCAACACGATGTTTCTGGATCGCCTGCCCAGGCTTCGTATCCTTACTATATGTCAGGGGTTGTCAATCAAGCTATGGGGTCATCATCGACTCAAGTGTATCAAAAGAATCTGCATGACATGCAAAATCATGCCGCAGCTGCAATTATGCAACACTACGGTCATCTACCACACTGCCATCCACATGTTAATGGGATGACTTCATTCCCCTACTATCCGCTCAGTATATGCTTACAACCTGGTCAAATGCCTAACAATCCTTCATGGCCATCCTTCGGAAGCTCATCCTCCAACGAAGTGAAATTAAACAAGGTTGACAGAAGAGAGGCAGCATTGATTAAATTTCGGCAGAAAAGAAAGGAGCGTTGCTTTGATAAAAAGATCAGGTATGTTAATCGTAAAAAACTTGCCGAAAGGAGGCCTCGTGTAAGGGGACAATTTGTGAGGAAGGTAAATGGTGTAGATGTTGATCTCAATGGGCAACCTGCTTCTCTTGATGATGATGAGGATGATGAAGATGAGAAGGATGATGAAGAGCTTGCATGA

Protein Analysis

537

Amino Acids

60.07

Weight (kDa)

5.51

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 33 - 144 2.7e-18 Response regulator receiver domain
CCT PF06203 463 - 505 1.3e-15 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1558
AccBSI CCGCTC 3 cut(s) 386, 720, 1285
AclWI GGATC 6 cut(s) 12, 515, 524, 581, 997, 1093
AcoI YGGCCR 1 cut(s) 1331
AcsI RAATTY 1 cut(s) 1406
AcuI CTGAAG 3 cut(s) 60, 267, 986
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 3 cut(s) 802, 1340, 1482
AflIII ACRYGT 3 cut(s) 444, 486, 1249
AgsI TTSAA 3 cut(s) 28, 211, 286
AjnI CCWGG 3 cut(s) 985, 1095, 1303
AleI CACNNNNGTG 1 cut(s) 445
AluBI AGCT 8 cut(s) 19, 126, 424, 909, 1139, 1205, 1347, 1603
AluI AGCT 8 cut(s) 19, 126, 424, 909, 1139, 1205, 1347, 1603
Alw21I GWGCWC 2 cut(s) 21, 128
Alw26I GTCTC 3 cut(s) 189, 576, 830
AlwI GGATC 6 cut(s) 12, 515, 524, 581, 997, 1093
AoxI GGCC 3 cut(s) 706, 1331, 1484
ApeKI GCWGC 6 cut(s) 605, 614, 617, 1202, 1205, 1394
ApoI RAATTY 1 cut(s) 1406
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
Asp700I GAANNNNTTC 3 cut(s) 135, 545, 697
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 4 cut(s) 35, 221, 707, 1032
AsuHPI GGTGA 4 cut(s) 77, 103, 190, 286
AvaII GGWCC 3 cut(s) 35, 221, 1032
AxyI CCTNAGG 1 cut(s) 374
BaeI ACNNNNGTAYC 4 cut(s) 498, 498, 531, 531
BalI TGGCCA 1 cut(s) 1333
BanII GRGCYC 2 cut(s) 21, 128
BauI CACGAG 1 cut(s) 1488
BbsI GAAGAC 2 cut(s) 463, 1032
Bbv12I GWGCWC 2 cut(s) 21, 128
BbvI GCAGC 6 cut(s) 592, 601, 604, 1192, 1214, 1406
BccI CCATC 3 cut(s) 878, 1251, 1342
BciT130I CCWGG 3 cut(s) 987, 1097, 1305
BciVI GTATCC 1 cut(s) 1116
BclI TGATCA 2 cut(s) 327, 640
BcoDI GTCTC 3 cut(s) 189, 576, 830
BfaI CTAG 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 1558
BfuI GTATCC 1 cut(s) 1116
Bme1390I CCNGG 3 cut(s) 987, 1097, 1305
Bme18I GGWCC 3 cut(s) 35, 221, 1032
BmgT120I GGNCC 4 cut(s) 35, 221, 707, 1032
BmiI GGNNCC 2 cut(s) 222, 627
BmrFI CCNGG 3 cut(s) 987, 1097, 1305
BmsI GCATC 4 cut(s) 193, 954, 1015, 1060
BpiI GAAGAC 2 cut(s) 463, 1032
BplI GAGNNNNNCTC 4 cut(s) 110, 142, 770, 802
Bpu10I CCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 4 cut(s) 797, 861, 1023, 1143
Bsa29I ATCGAT 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 1533
BsaJI CCNNGG 2 cut(s) 188, 1095
BsaXI ACNNNNNCTCC 4 cut(s) 613, 643, 1474, 1504
Bsc4I CCNNNNNNNGG 3 cut(s) 802, 1340, 1482
Bse1I ACTGG 3 cut(s) 639, 694, 936
Bse21I CCTNAGG 1 cut(s) 374
Bse8I GATNNNNATC 1 cut(s) 1533
BseBI CCWGG 3 cut(s) 987, 1097, 1305
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 188, 1095
BseJI GATNNNNATC 1 cut(s) 1533
BseLI CCNNNNNNNGG 3 cut(s) 802, 1340, 1482
BseMII CTCAG 4 cut(s) 365, 587, 1038, 1300
BseNI ACTGG 3 cut(s) 639, 694, 936
BseRI GAGGAG 2 cut(s) 177, 864
BseXI GCAGC 6 cut(s) 592, 601, 604, 1192, 1214, 1406
BshFI GGCC 3 cut(s) 708, 1333, 1486
BshVI ATCGAT 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 21, 128
BslFI GGGAC 3 cut(s) 234, 286, 1512
BslI CCNNNNNNNGG 3 cut(s) 802, 1340, 1482
BsmAI GTCTC 3 cut(s) 189, 576, 830
BsmFI GGGAC 3 cut(s) 234, 286, 1512
BsmI GAATGC 3 cut(s) 217, 318, 586
BsnI GGCC 3 cut(s) 708, 1333, 1486
Bsp1286I GDGCHC 2 cut(s) 21, 128
BspANI GGCC 3 cut(s) 708, 1333, 1486
BspCNI CTCAG 4 cut(s) 366, 586, 1039, 1299
BspDI ATCGAT 1 cut(s) 201
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 222, 627
BspMI ACCTGC 1 cut(s) 1558
BspPI GGATC 6 cut(s) 12, 515, 524, 581, 997, 1093
BspQI GCTCTTC 1 cut(s) 1593
BsrBI CCGCTC 3 cut(s) 386, 720, 1285
BsrI ACTGG 3 cut(s) 639, 694, 936
BssECI CCNNGG 2 cut(s) 188, 1095
BssSI CACGAG 1 cut(s) 1488
Bst2BI CACGAG 1 cut(s) 1488
Bst2UI CCWGG 3 cut(s) 987, 1097, 1305
Bst4CI ACNGT 4 cut(s) 361, 511, 822, 1226
Bst6I CTCTTC 3 cut(s) 828, 1381, 1593
BstAPI GCANNNNNTGC 2 cut(s) 212, 1186
BstC8I GCNNGC 2 cut(s) 1092, 1605
BstDEI CTNAG 5 cut(s) 140, 374, 573, 1047, 1286
BstHHI GCGC 1 cut(s) 318
BstMAI GTCTC 3 cut(s) 189, 576, 830
BstMWI GCNNNNNNNGC 8 cut(s) 54, 57, 60, 212, 611, 614, 1186, 1205
BstNI CCWGG 3 cut(s) 987, 1097, 1305
BstNSI RCATGY 5 cut(s) 448, 466, 852, 1189, 1253
BstSCI CCNGG 3 cut(s) 985, 1095, 1303
BstV1I GCAGC 6 cut(s) 592, 601, 604, 1192, 1214, 1406
BstV2I GAAGAC 2 cut(s) 463, 1032
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
Bsu15I ATCGAT 1 cut(s) 201
Bsu36I CCTNAGG 1 cut(s) 374
BsuI GTATCC 1 cut(s) 1116
BsuRI GGCC 3 cut(s) 708, 1333, 1486
BsuTUI ATCGAT 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 1237
BtsIMutI CAGTG 2 cut(s) 632, 1237
BveI ACCTGC 1 cut(s) 1558
Cac8I GCNNGC 2 cut(s) 1092, 1605
CciI TCATGA 1 cut(s) 330
CfoI GCGC 1 cut(s) 318
Cfr13I GGNCC 4 cut(s) 35, 221, 707, 1032
ClaI ATCGAT 1 cut(s) 201
CsiI ACCWGGT 1 cut(s) 1303
Csp6I GTAC 1 cut(s) 289
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 5 cut(s) 140, 374, 573, 1047, 1286
EaeI YGGCCR 1 cut(s) 1331
Eam1104I CTCTTC 3 cut(s) 828, 1381, 1593
EarI CTCTTC 3 cut(s) 828, 1381, 1593
Ecl136II GAGCTC 2 cut(s) 19, 126
Eco147I AGGCCT 1 cut(s) 1486
Eco24I GRGCYC 2 cut(s) 21, 128
Eco32I GATATC 2 cut(s) 235, 597
Eco47I GGWCC 3 cut(s) 35, 221, 1032
Eco53kI GAGCTC 2 cut(s) 19, 126
Eco57I CTGAAG 3 cut(s) 60, 267, 986
Eco81I CCTNAGG 1 cut(s) 374
EcoICRI GAGCTC 2 cut(s) 19, 126
EcoO109I RGGNCCY 3 cut(s) 35, 221, 1032
EcoRII CCWGG 3 cut(s) 985, 1095, 1303
EcoRV GATATC 2 cut(s) 235, 597
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 21, 128
FalI AAGNNNNNCTT 4 cut(s) 123, 155, 240, 272
FaqI GGGAC 3 cut(s) 234, 286, 1512
FbaI TGATCA 2 cut(s) 327, 640
FriOI GRGCYC 2 cut(s) 21, 128
FspBI CTAG 1 cut(s) 525
GlaI GCGC 1 cut(s) 317
HaeIII GGCC 3 cut(s) 708, 1333, 1486
HhaI GCGC 1 cut(s) 318
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 2 cut(s) 253, 1381
HindII GTYRAC 2 cut(s) 253, 1381
HinfI GANTC 5 cut(s) 119, 869, 953, 1156, 1174
HphI GGTGA 4 cut(s) 77, 103, 190, 286
Hpy166II GTNNAC 4 cut(s) 253, 438, 854, 1381
Hpy188I TCNGA 9 cut(s) 130, 153, 429, 520, 553, 576, 657, 817, 1343
Hpy188III TCNNGA 6 cut(s) 331, 590, 668, 825, 1083, 1559
Hpy8I GTNNAC 4 cut(s) 253, 438, 854, 1381
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 7 cut(s) 266, 757, 796, 1335, 1348, 1507, 1582
HpyCH4III ACNGT 4 cut(s) 361, 511, 822, 1226
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 8 cut(s) 206, 476, 978, 1180, 1189, 1208, 1216, 1607
HpyF10VI GCNNNNNNNGC 8 cut(s) 54, 57, 60, 212, 611, 614, 1186, 1205
HpyF3I CTNAG 5 cut(s) 140, 374, 573, 1047, 1286
HpySE526I ACGT 1 cut(s) 486
HspAI GCGC 1 cut(s) 316
Ksp22I TGATCA 2 cut(s) 327, 640
LguI GCTCTTC 1 cut(s) 1593
LmnI GCTCC 6 cut(s) 16, 84, 131, 383, 625, 1426
Lsp1109I GCAGC 6 cut(s) 592, 601, 604, 1192, 1214, 1406
LweI GCATC 4 cut(s) 193, 954, 1015, 1060
MabI ACCWGGT 1 cut(s) 1303
MaeI CTAG 1 cut(s) 525
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 2 cut(s) 169, 677
MbiI CCGCTC 3 cut(s) 386, 720, 1285
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 2 cut(s) 21, 128
MlsI TGGCCA 1 cut(s) 1333
MluCI AATT 6 cut(s) 22, 644, 1209, 1367, 1406, 1502
MluNI TGGCCA 1 cut(s) 1333
MlyI GAGTC 2 cut(s) 128, 1150
MmeI TCCRAC 2 cut(s) 956, 1380
Mox20I TGGCCA 1 cut(s) 1333
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 3 cut(s) 135, 545, 697
MscI TGGCCA 1 cut(s) 1333
MseI TTAA 5 cut(s) 366, 1254, 1370, 1404, 1458
MslI CAYNNNNRTG 4 cut(s) 323, 445, 1248, 1254
Msp20I TGGCCA 1 cut(s) 1333
MspA1I CMGCKG 1 cut(s) 1205
MspR9I CCNGG 3 cut(s) 987, 1097, 1305
Mva1269I GAATGC 3 cut(s) 217, 318, 586
MvaI CCWGG 3 cut(s) 987, 1097, 1305
MwoI GCNNNNNNNGC 8 cut(s) 54, 57, 60, 212, 611, 614, 1186, 1205
NlaIV GGNNCC 2 cut(s) 222, 627
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 677
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 5 cut(s) 448, 466, 852, 1189, 1253
OliI CACNNNNGTG 1 cut(s) 445
PagI TCATGA 1 cut(s) 330
PceI AGGCCT 1 cut(s) 1486
PciI ACATGT 2 cut(s) 444, 1249
PciSI GCTCTTC 1 cut(s) 1593
PctI GAATGC 3 cut(s) 217, 318, 586
PdmI GAANNNNTTC 3 cut(s) 135, 545, 697
PfeI GAWTC 3 cut(s) 869, 953, 1174
PleI GAGTC 2 cut(s) 127, 1150
PpsI GAGTC 2 cut(s) 127, 1150
PpuMI RGGWCCY 3 cut(s) 35, 221, 1032
PscI ACATGT 2 cut(s) 444, 1249
Psp124BI GAGCTC 2 cut(s) 21, 128
Psp5II RGGWCCY 3 cut(s) 35, 221, 1032
Psp6I CCWGG 3 cut(s) 985, 1095, 1303
PspGI CCWGG 3 cut(s) 985, 1095, 1303
PspN4I GGNNCC 2 cut(s) 222, 627
PspPI GGNCC 4 cut(s) 35, 221, 707, 1032
PspPPI RGGWCCY 3 cut(s) 35, 221, 1032
PsuI RGATCY 1 cut(s) 520
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 4 cut(s) 323, 445, 1248, 1254
SacI GAGCTC 2 cut(s) 21, 128
SapI GCTCTTC 1 cut(s) 1593
SaqAI TTAA 5 cut(s) 366, 1254, 1370, 1404, 1458
Sau96I GGNCC 4 cut(s) 35, 221, 707, 1032
SchI GAGTC 2 cut(s) 128, 1150
ScrFI CCNGG 3 cut(s) 987, 1097, 1305
SduI GDGCHC 2 cut(s) 21, 128
SexAI ACCWGGT 1 cut(s) 1303
SfaNI GCATC 4 cut(s) 193, 954, 1015, 1060
SinI GGWCC 3 cut(s) 35, 221, 1032
SmiMI CAYNNNNRTG 4 cut(s) 323, 445, 1248, 1254
SmlI CTYRAG 4 cut(s) 776, 876, 1038, 1158
SmoI CTYRAG 4 cut(s) 776, 876, 1038, 1158
Sse9I AATT 6 cut(s) 22, 644, 1209, 1367, 1406, 1502
SseBI AGGCCT 1 cut(s) 1486
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 2 cut(s) 21, 128
StuI AGGCCT 1 cut(s) 1486
StyD4I CCNGG 3 cut(s) 985, 1095, 1303
TaaI ACNGT 4 cut(s) 361, 511, 822, 1226
TaiI ACGT 1 cut(s) 489
TaqI TCGA 4 cut(s) 122, 201, 504, 1154
TasI AATT 6 cut(s) 22, 644, 1209, 1367, 1406, 1502
TatI WGTACW 1 cut(s) 288
TauI GCSGC 8 cut(s) 51, 54, 57, 60, 63, 389, 605, 1202
TfiI GAWTC 3 cut(s) 869, 953, 1174
Tru1I TTAA 5 cut(s) 366, 1254, 1370, 1404, 1458
Tru9I TTAA 5 cut(s) 366, 1254, 1370, 1404, 1458
TscAI CASTG 2 cut(s) 639, 1244
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 6 cut(s) 605, 614, 617, 1202, 1205, 1394
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 7 cut(s) 690, 882, 951, 1257, 1317, 1593, 1611
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 2 cut(s) 639, 1244
VpaK11BI GGWCC 3 cut(s) 35, 221, 1032
XapI RAATTY 1 cut(s) 1406
XceI RCATGY 5 cut(s) 448, 466, 852, 1189, 1253
XmnI GAANNNNTTC 3 cut(s) 135, 545, 697
XspI CTAG 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.