Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Reverse (-)

65470023 .. 65473304

Gene Structure 3282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGTCGGCACAGGTTGACGTCTCTACTGTTGTTAAGTGCCTGAGGCTCGGAGCGGCAGACTATCTTGTAAAGCCTTTACAAACTAATGAGCTTCTAAACTTGCGGACACAAATGTGGAGAAGAAGACACATGCTTGGTCTTGCAGAGAAGAACGTGTTTAGTTATGACTTTGATACAGTGGTATCAGATCCTAGTGATCCTAATACGAACTCATTCTCGGATGATACAGAAGGTAAGTCTCAGAAGAGTGCCGATCCAGAGATACCTGTGGCTGCTGTTGCTGCTGCTACGGAGCCTCCACTGGATGATCAATTAGAGTTTCAGAGTGATGTTCCAGAAATAAGTGGCTGCCAAACTGGTGAGCCACTTATGGCAATTGATGTGCTGTTTTTAAGAAAGTTTTCATCTGGCCCAAAAAAGAGCGAACTAATGATTGGGGGGTCATCTGCCTTCTTTACCTATGTCAAATCAAGCACACTTGAAAACAATTCCCAAGTCCATACGAAGGATAATGGTTCTGAACGGTCAAGAGTGGAAGAGAAACATCCAGCATGTAGTGAACAAGTGGTTGATGAGTCTCTCCAAGTAGATGAAAATGGAGAAGCATGGGAAACCTATTCACGAGAAGATGACTTTCCAACCAGTAATAGTATCCCAGATTCTCTTTCATTGGAGAGATTGCCTGCACATGCTTCGTACCCATACGATATATCGGGGGTTGTCAATCAGGTTATGGGGTCATTATCGACACAAGTGTATCAAAAGATTCTGCAGGACATGCCTAATCATGCCGCAGCAGCAATTATGCAACATTACAGTCATCTTCCACACTGCCCTCCACATGTAAATGGGATGACTTCATTCTTCTACTATCCGCTTAGTATATGCTTACAACCTGGTCAAATGCCTAACAATCATTCATGGCCATCCTTTGGAAGCTCATCCGCCAGTGAAGTGAAATTAAATAAGGTTGACAGAAGAAAGGTGTCATTGATTAAATTTAGGCAGAAAAGAAAGGAGCGTTGCTTTGATAAAAAGATTAGGTATGTTAATCGAAAAAGACTTGCCGAAAGGAGGCCTCGTGTCCGGGGACAATTTGTGAGGAAGGTAAATGGTGTAGATGTTGATCTCAATGGGCAACCTGCTTCTCTTGATGACGATGAGGATGACGAGGATGAGAAGGATGATGAGGAGCTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

401

Amino Acids

44.91

Weight (kDa)

5.2

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	327 - 369	3.8e-14	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	1150
AccB7I	CCANNNNNTGG	1 cut(s)	932
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	5 cut(s)	53, 103, 792, 875, 945
AclWI	GGATC	3 cut(s)	182, 191, 248
AcoI	YGGCCR	1 cut(s)	923
AcsI	RAATTY	1 cut(s)	998
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	3 cut(s)	505, 932, 1074
AflIII	ACRYGT	2 cut(s)	153, 841
AgsI	TTSAA	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	895
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AleI	CACNNNNGTG	1 cut(s)	112
AluBI	AGCT	3 cut(s)	91, 939, 1195
AluI	AGCT	3 cut(s)	91, 939, 1195
Alw26I	GTCTC	3 cut(s)	25, 243, 582
AlwI	GGATC	3 cut(s)	182, 191, 248
AoxI	GGCC	3 cut(s)	409, 923, 1076
ApeKI	GCWGC	6 cut(s)	272, 281, 284, 348, 794, 797
ApoI	RAATTY	1 cut(s)	998
Asp700I	GAANNNNTTC	2 cut(s)	212, 400
AspS9I	GGNCC	1 cut(s)	410
AsuC2I	CCSGG	1 cut(s)	1088
AsuHPI	GGTGA	1 cut(s)	371
AxyI	CCTNAGG	1 cut(s)	41
BaeI	ACNNNNGTAYC	6 cut(s)	165, 165, 198, 198, 740, 773
BalI	TGGCCA	1 cut(s)	925
BauI	CACGAG	2 cut(s)	621, 1080
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	6 cut(s)	259, 268, 271, 335, 806, 809
BccI	CCATC	1 cut(s)	934
BcgI	CGANNNNNNTGC	2 cut(s)	675, 709
BciT130I	CCWGG	1 cut(s)	897
BciVI	GTATCC	1 cut(s)	662
BclI	TGATCA	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	1088
BcoDI	GTCTC	3 cut(s)	25, 243, 582
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	770
BfuAI	ACCTGC	1 cut(s)	1150
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	8 cut(s)	54, 273, 282, 285, 349, 792, 795, 798
BlsI	GCNGC	8 cut(s)	55, 274, 283, 286, 350, 793, 796, 799
Bme1390I	CCNGG	2 cut(s)	897, 1088
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	2 cut(s)	897, 1088
BpiI	GAAGAC	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	1088
BsaBI	GATNNNNATC	1 cut(s)	1125
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	1087
BsaXI	ACNNNNNCTCC	5 cut(s)	280, 310, 1066, 1096, 1184
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 932, 1074
Bse1I	ACTGG	4 cut(s)	306, 361, 642, 948
Bse21I	CCTNAGG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	1125
BseBI	CCWGG	1 cut(s)	897
BseDI	CCNNGG	1 cut(s)	1087
BseGI	GGATG	9 cut(s)	226, 310, 544, 858, 926, 941, 1171, 1180, 1189
BseJI	GATNNNNATC	1 cut(s)	1125
BseLI	CCNNNNNNNGG	3 cut(s)	505, 932, 1074
BseMII	CTCAG	2 cut(s)	32, 254
BseNI	ACTGG	4 cut(s)	306, 361, 642, 948
BseXI	GCAGC	6 cut(s)	259, 268, 271, 335, 806, 809
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	3 cut(s)	411, 925, 1078
BsiSI	CCGG	1 cut(s)	1087
BslFI	GGGAC	1 cut(s)	1104
BslI	CCNNNNNNNGG	3 cut(s)	505, 932, 1074
BsmAI	GTCTC	3 cut(s)	25, 243, 582
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	1104
BsnI	GGCC	3 cut(s)	411, 925, 1078
Bsp143I	GATC	5 cut(s)	187, 196, 253, 307, 1126
BspACI	CCGC	5 cut(s)	53, 103, 792, 875, 945
BspANI	GGCC	3 cut(s)	411, 925, 1078
BspCNI	CTCAG	2 cut(s)	33, 253
BspLI	GGNNCC	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	774
BspMI	ACCTGC	1 cut(s)	1150
BspPI	GGATC	3 cut(s)	182, 191, 248
BsrBI	CCGCTC	1 cut(s)	53
BsrI	ACTGG	4 cut(s)	306, 361, 642, 948
BssECI	CCNNGG	1 cut(s)	1087
BssMI	GATC	5 cut(s)	187, 196, 253, 307, 1126
BssNI	GRCGYC	1 cut(s)	18
BssSI	CACGAG	2 cut(s)	621, 1080
Bst2BI	CACGAG	2 cut(s)	621, 1080
Bst2UI	CCWGG	1 cut(s)	897
Bst4CI	ACNGT	4 cut(s)	28, 178, 525, 818
Bst6I	CTCTTC	2 cut(s)	239, 531
BstACI	GRCGYC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	778
BstC8I	GCNNGC	2 cut(s)	684, 1197
BstDEI	CTNAG	3 cut(s)	41, 240, 878
BstF5I	GGATG	9 cut(s)	226, 310, 544, 858, 926, 941, 1171, 1180, 1189
BstKTI	GATC	5 cut(s)	190, 199, 256, 310, 1129
BstMAI	GTCTC	3 cut(s)	25, 243, 582
BstMBI	GATC	5 cut(s)	187, 196, 253, 307, 1126
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 281, 778, 797
BstNI	CCWGG	1 cut(s)	897
BstNSI	RCATGY	5 cut(s)	133, 555, 692, 781, 845
BstSCI	CCNGG	2 cut(s)	895, 1086
BstSFI	CTRYAG	1 cut(s)	770
BstV1I	GCAGC	6 cut(s)	259, 268, 271, 335, 806, 809
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	3 cut(s)	411, 925, 1078
BtsCI	GGATG	9 cut(s)	226, 310, 544, 858, 926, 941, 1171, 1180, 1189
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	4 cut(s)	183, 299, 829, 955
BveI	ACCTGC	1 cut(s)	1150
Cac8I	GCNNGC	2 cut(s)	684, 1197
Cfr13I	GGNCC	1 cut(s)	410
CsiI	ACCWGGT	1 cut(s)	895
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	8 cut(s)	130, 552, 606, 689, 778, 788, 842, 921
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	3 cut(s)	41, 240, 878
DpnI	GATC	5 cut(s)	189, 198, 255, 309, 1128
DpnII	GATC	5 cut(s)	187, 196, 253, 307, 1126
EaeI	YGGCCR	1 cut(s)	923
Eam1104I	CTCTTC	2 cut(s)	239, 531
EarI	CTCTTC	2 cut(s)	239, 531
EciI	GGCGGA	1 cut(s)	934
Eco147I	AGGCCT	1 cut(s)	1078
Eco81I	CCTNAGG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	895
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	8 cut(s)	133, 555, 609, 692, 781, 791, 845, 924
FaqI	GGGAC	1 cut(s)	1104
FatI	CATG	8 cut(s)	129, 551, 605, 688, 777, 787, 841, 920
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	8 cut(s)	54, 273, 282, 285, 349, 792, 795, 798
FokI	GGATG	9 cut(s)	233, 317, 531, 865, 913, 928, 1178, 1187, 1196
Fsp4HI	GCNGC	8 cut(s)	54, 273, 282, 285, 349, 792, 795, 798
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	8 cut(s)	54, 273, 282, 285, 349, 792, 795, 798
HaeIII	GGCC	3 cut(s)	411, 925, 1078
HapII	CCGG	1 cut(s)	1087
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	8 cut(s)	133, 555, 609, 692, 781, 791, 845, 924
HincII	GTYRAC	2 cut(s)	16, 973
HindII	GTYRAC	2 cut(s)	16, 973
HinfI	GANTC	3 cut(s)	575, 659, 766
HpaII	CCGG	1 cut(s)	1087
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	3 cut(s)	16, 560, 973
Hpy188I	TCNGA	6 cut(s)	50, 187, 220, 243, 324, 520
Hpy188III	TCNNGA	5 cut(s)	257, 335, 528, 621, 1151
Hpy8I	GTNNAC	3 cut(s)	16, 560, 973
HpyAV	CCTTC	5 cut(s)	224, 460, 499, 1099, 1174
HpyCH4III	ACNGT	4 cut(s)	28, 178, 525, 818
HpyCH4IV	ACGT	2 cut(s)	18, 153
HpyCH4V	TGCA	4 cut(s)	143, 686, 772, 808
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 281, 778, 797
HpyF3I	CTNAG	3 cut(s)	41, 240, 878
HpySE526I	ACGT	2 cut(s)	18, 153
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	8 cut(s)	133, 555, 609, 692, 781, 791, 845, 924
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	5 cut(s)	187, 196, 253, 307, 1126
LmnI	GCTCC	4 cut(s)	50, 292, 1018, 1192
Lsp1109I	GCAGC	6 cut(s)	259, 268, 271, 335, 806, 809
MabI	ACCWGGT	1 cut(s)	895
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	2 cut(s)	18, 153
MalI	GATC	5 cut(s)	189, 198, 255, 309, 1128
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	5 cut(s)	187, 196, 253, 307, 1126
MboII	GAAGA	9 cut(s)	132, 135, 160, 256, 548, 638, 815, 856, 990
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	925
MluCI	AATT	7 cut(s)	311, 375, 487, 801, 959, 998, 1094
MluNI	TGGCCA	1 cut(s)	925
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	9 cut(s)	36, 306, 846, 1068, 1089, 1095, 1156, 1165, 1183
Mox20I	TGGCCA	1 cut(s)	925
MroXI	GAANNNNTTC	2 cut(s)	212, 400
MscI	TGGCCA	1 cut(s)	925
MseI	TTAA	5 cut(s)	33, 392, 962, 996, 1050
MslI	CAYNNNNRTG	2 cut(s)	112, 846
Msp20I	TGGCCA	1 cut(s)	925
MspI	CCGG	1 cut(s)	1087
MspR9I	CCNGG	2 cut(s)	897, 1088
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	897
MwoI	GCNNNNNNNGC	4 cut(s)	278, 281, 778, 797
NciI	CCSGG	1 cut(s)	1088
NdeII	GATC	5 cut(s)	187, 196, 253, 307, 1126
NlaIII	CATG	8 cut(s)	133, 555, 609, 692, 781, 791, 845, 924
NlaIV	GGNNCC	1 cut(s)	294
NspI	RCATGY	5 cut(s)	133, 555, 692, 781, 845
OliI	CACNNNNGTG	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	1078
PciI	ACATGT	1 cut(s)	841
PdmI	GAANNNNTTC	2 cut(s)	212, 400
PfeI	GAWTC	2 cut(s)	659, 766
PflMI	CCANNNNNTGG	1 cut(s)	932
PkrI	GCNGC	8 cut(s)	55, 274, 283, 286, 350, 793, 796, 799
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
PscI	ACATGT	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	895
PspGI	CCWGG	1 cut(s)	895
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	774
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	2 cut(s)	112, 846
SaqAI	TTAA	5 cut(s)	33, 392, 962, 996, 1050
SatI	GCNGC	8 cut(s)	54, 273, 282, 285, 349, 792, 795, 798
Sau3AI	GATC	5 cut(s)	187, 196, 253, 307, 1126
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	2 cut(s)	897, 1088
SexAI	ACCWGGT	1 cut(s)	895
SfcI	CTRYAG	1 cut(s)	770
SmiMI	CAYNNNNRTG	2 cut(s)	112, 846
Sse9I	AATT	7 cut(s)	311, 375, 487, 801, 959, 998, 1094
SseBI	AGGCCT	1 cut(s)	1078
SsiI	CCGC	5 cut(s)	53, 103, 792, 875, 945
SspMI	CTAG	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	1078
StyD4I	CCNGG	2 cut(s)	895, 1086
TaaI	ACNGT	4 cut(s)	28, 178, 525, 818
TaiI	ACGT	2 cut(s)	21, 156
TaqI	TCGA	2 cut(s)	746, 1054
TasI	AATT	7 cut(s)	311, 375, 487, 801, 959, 998, 1094
TauI	GCSGC	2 cut(s)	56, 794
TfiI	GAWTC	2 cut(s)	659, 766
Tru1I	TTAA	5 cut(s)	33, 392, 962, 996, 1050
Tru9I	TTAA	5 cut(s)	33, 392, 962, 996, 1050
TscAI	CASTG	4 cut(s)	183, 306, 836, 955
TseI	GCWGC	6 cut(s)	272, 281, 284, 348, 794, 797
TspDTI	ATGAA	5 cut(s)	393, 606, 657, 849, 909
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	4 cut(s)	183, 306, 836, 955
Van91I	CCANNNNNTGG	1 cut(s)	932
XapI	RAATTY	1 cut(s)	998
XceI	RCATGY	5 cut(s)	133, 555, 692, 781, 845
XmnI	GAANNNNTTC	2 cut(s)	212, 400
XspI	CTAG	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.