Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Forward (+)

21402898 .. 21406011

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17420.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAGCCGAAGGAGCTGAATTTGAACAGGGACTTTGAAACTGGTAGCAGTGGCGGCGGGGGTGGAGGTTGTGGTGGCGGTGGTGGTGGTGCTGATGGGTTCATCGACAGGAGCAGAGTGAGGATTTTACTGTGCGATAACAACGAGTCCAGTTCGGAAGAGGTTTTCACGCTTCTTGTGAAATGTTCTTACCAGGTTACTTCCGTGAAGTCTCCTCGACAGGTGATTGATGCATTGAATGCAGAGGGACCTGATATCGATCTTATACTTGCCGAAGTTGACCTTCCAATGCGCAAAGGCATGAAATTGTTGAAGTACATCACACGGGACAGAGAGTTACGGCGCATTCCTGTAATCATGATGTCGGCACAAGATGAGGTCTCTACTGTTGTTAAGTGCTTGAAGCTTGGAGCAGCAGACTATCTTGTGAAGCCTTTACGAACTAATGAACTTCTGAACTTGTGGACACACATGTGGAGAAGAAGGCGCATGCTTGGGCTGGCAGAGAAGAACCTTATAAATTATGTTGATCAGGTGATATCAGACCCGAGCGGATCCAATACAAACAGTACTACTTTATTCTCGGATGACACAGATGATAAATCTGGCAATCCAGAGACAGGAACCTCAGCTCCTGAGGAAGATAAGTCTGATGCTGTTGCTGCTGCGATGGAGCTTCCAGTAAAGAATATATCAGAATTTCGGCCTGATGTTCCAGGAATAAGTGACCGCCAAACTGGAAAGTTTTTATCTGCCCCAAGAAAGAGCGAACTAAAGATTGGCATTGGCGAGTCATCTGCCTTCTTTACCTATGTCAAATCAAGCAAACTTAAAATCAACTCCCAGGTGGTTGCCGATGTTGAAGACATTGCCACTGAACATTTGAGGATAGAAGAGAAACATCAAGAATGTGTTTCCCACCAAGTGGTTGATGATGATCCCCAAGTACATGGAAATGGAGAGGCGTGGGAAAGCAACTCACAGGGAGATGACTTGCCAAGTGGTAATAGTATCCCAGATTCTCTTTCGTTGGAGAGGTCTAGTACCCCGTCTGGATCAATGGAACTTCAACATCAGAGAAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

363

Amino Acids

39.6

Weight (kDa)

4.92

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
Acc16I	TGCGCA	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	925
AccBSI	CCGCTC	1 cut(s)	552
AciI	CCGC	5 cut(s)	54, 57, 78, 552, 730
AclWI	GGATC	4 cut(s)	549, 562, 932, 1063
AcsI	RAATTY	2 cut(s)	19, 698
AdeI	CACNNNGTG	1 cut(s)	925
AfaI	GTAC	4 cut(s)	317, 571, 948, 1045
AfiI	CCNNNNNNNGG	2 cut(s)	620, 925
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	7 cut(s)	25, 38, 238, 313, 403, 863, 1070
AjnI	CCWGG	3 cut(s)	192, 715, 843
AjuI	GAANNNNNNNTTGG	2 cut(s)	762, 794
AleI	CACNNNNGTG	1 cut(s)	472
AloI	GAACNNNNNNTCC	2 cut(s)	616, 648
AluBI	AGCT	4 cut(s)	16, 406, 632, 676
AluI	AGCT	4 cut(s)	16, 406, 632, 676
Alw26I	GTCTC	3 cut(s)	216, 385, 611
AlwI	GGATC	4 cut(s)	549, 562, 932, 1063
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	1 cut(s)	704
ApeKI	GCWGC	3 cut(s)	413, 662, 665
ApoI	RAATTY	2 cut(s)	19, 698
AspLEI	GCGC	3 cut(s)	294, 345, 489
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	235, 547
AvaI	CYCGRG	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	248
AxyI	CCTNAGG	1 cut(s)	636
BamHI	GGATCC	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	870
BbvCI	CCTCAGC	1 cut(s)	628
BbvI	GCAGC	3 cut(s)	425, 649, 652
BccI	CCATC	2 cut(s)	89, 664
BceAI	ACGGC	1 cut(s)	356
BcgI	CGANNNNNNTGC	2 cut(s)	779, 813
BciT130I	CCWGG	3 cut(s)	194, 717, 845
BciVI	GTATCC	1 cut(s)	1022
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	3 cut(s)	216, 385, 611
BfaI	CTAG	1 cut(s)	1041
BfuI	GTATCC	1 cut(s)	1022
BisI	GCNGC	4 cut(s)	55, 414, 663, 666
BlsI	GCNGC	4 cut(s)	56, 415, 664, 667
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	3 cut(s)	194, 717, 845
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	4 cut(s)	6, 249, 556, 625
BmrFI	CCNGG	3 cut(s)	194, 717, 845
BmsI	GCATC	2 cut(s)	220, 643
BpiI	GAAGAC	1 cut(s)	870
Bpu10I	CCTNAGC	1 cut(s)	628
Bsa29I	ATCGAT	1 cut(s)	258
BsaBI	GATNNNNATC	2 cut(s)	258, 936
BsaI	GGTCTC	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	843
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 925
Bse1I	ACTGG	4 cut(s)	46, 150, 680, 742
Bse21I	CCTNAGG	1 cut(s)	636
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	2 cut(s)	258, 936
BseBI	CCWGG	3 cut(s)	194, 717, 845
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	843
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	2 cut(s)	258, 936
BseLI	CCNNNNNNNGG	2 cut(s)	620, 925
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	2 cut(s)	627, 642
BseNI	ACTGG	4 cut(s)	46, 150, 680, 742
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	3 cut(s)	425, 649, 652
BshFI	GGCC	1 cut(s)	706
BshVI	ATCGAT	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	547
BslFI	GGGAC	3 cut(s)	44, 261, 341
BslI	CCNNNNNNNGG	2 cut(s)	620, 925
BsmAI	GTCTC	3 cut(s)	216, 385, 611
BsmFI	GGGAC	3 cut(s)	44, 261, 341
BsmI	GAATGC	2 cut(s)	244, 345
BsnI	GGCC	1 cut(s)	706
Bso31I	GGTCTC	1 cut(s)	385
BsoBI	CYCGRG	1 cut(s)	547
Bsp143I	GATC	5 cut(s)	259, 529, 554, 937, 1055
BspACI	CCGC	5 cut(s)	54, 57, 78, 552, 730
BspANI	GGCC	1 cut(s)	706
BspCNI	CTCAG	2 cut(s)	628, 641
BspDI	ATCGAT	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	4 cut(s)	6, 249, 556, 625
BspPI	GGATC	4 cut(s)	549, 562, 932, 1063
BspTNI	GGTCTC	1 cut(s)	385
BsrBI	CCGCTC	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	4 cut(s)	46, 150, 680, 742
BssECI	CCNNGG	1 cut(s)	843
BssMI	GATC	5 cut(s)	259, 529, 554, 937, 1055
Bst2UI	CCWGG	3 cut(s)	194, 717, 845
Bst4CI	ACNGT	3 cut(s)	132, 388, 569
Bst6I	CTCTTC	2 cut(s)	153, 888
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	491, 501
BstDEI	CTNAG	2 cut(s)	628, 636
BstF5I	GGATG	1 cut(s)	592
BstHHI	GCGC	3 cut(s)	294, 345, 489
BstKTI	GATC	5 cut(s)	262, 532, 557, 940, 1058
BstMAI	GTCTC	3 cut(s)	216, 385, 611
BstMBI	GATC	5 cut(s)	259, 529, 554, 937, 1055
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 54, 239, 662
BstNI	CCWGG	3 cut(s)	194, 717, 845
BstNSI	RCATGY	2 cut(s)	475, 493
BstSCI	CCNGG	3 cut(s)	192, 715, 843
BstV1I	GCAGC	3 cut(s)	425, 649, 652
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	1 cut(s)	554
BstXI	CCANNNNNNTGG	1 cut(s)	950
BstYI	RGATCY	1 cut(s)	554
Bsu15I	ATCGAT	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	636
BsuI	GTATCC	1 cut(s)	1022
BsuRI	GGCC	1 cut(s)	706
BsuTUI	ATCGAT	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	683
BtsCI	GGATG	1 cut(s)	592
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 873
Cac8I	GCNNGC	2 cut(s)	491, 501
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	3 cut(s)	294, 345, 489
Cfr13I	GGNCC	1 cut(s)	248
ClaI	ATCGAT	1 cut(s)	258
CsiI	ACCWGGT	1 cut(s)	192
Csp6I	GTAC	4 cut(s)	316, 570, 947, 1044
CviAII	CATG	5 cut(s)	301, 358, 472, 490, 950
CviJI	RGCY	8 cut(s)	7, 16, 406, 433, 499, 632, 676, 706
CviKI_1	RGCY	8 cut(s)	7, 16, 406, 433, 499, 632, 676, 706
CviQI	GTAC	4 cut(s)	316, 570, 947, 1044
DdeI	CTNAG	2 cut(s)	628, 636
DpnI	GATC	5 cut(s)	261, 531, 556, 939, 1057
DpnII	GATC	5 cut(s)	259, 529, 554, 937, 1055
DraIII	CACNNNGTG	1 cut(s)	925
Eam1104I	CTCTTC	2 cut(s)	153, 888
EarI	CTCTTC	2 cut(s)	153, 888
Eco31I	GGTCTC	1 cut(s)	385
Eco32I	GATATC	2 cut(s)	256, 540
Eco47I	GGWCC	1 cut(s)	248
Eco81I	CCTNAGG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	3 cut(s)	192, 715, 843
EcoRV	GATATC	2 cut(s)	256, 540
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	5 cut(s)	304, 361, 475, 493, 953
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	3 cut(s)	44, 261, 341
FatI	CATG	5 cut(s)	300, 357, 471, 489, 949
FauI	CCCGC	1 cut(s)	50
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	4 cut(s)	55, 414, 663, 666
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	4 cut(s)	55, 414, 663, 666
FspBI	CTAG	1 cut(s)	1041
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	3 cut(s)	293, 344, 488
GluI	GCNGC	4 cut(s)	55, 414, 663, 666
HaeIII	GGCC	1 cut(s)	706
HhaI	GCGC	3 cut(s)	294, 345, 489
Hin1II	CATG	5 cut(s)	304, 361, 475, 493, 953
Hin6I	GCGC	3 cut(s)	292, 343, 487
HinP1I	GCGC	3 cut(s)	292, 343, 487
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	3 cut(s)	146, 791, 1019
HphI	GGTGA	2 cut(s)	235, 547
Hpy166II	GTNNAC	2 cut(s)	280, 465
Hpy188I	TCNGA	7 cut(s)	157, 456, 544, 586, 652, 697, 1077
Hpy188III	TCNNGA	5 cut(s)	358, 614, 635, 905, 1053
Hpy8I	GTNNAC	2 cut(s)	280, 465
HpyAV	CCTTC	4 cut(s)	4, 293, 477, 811
HpyCH4III	ACNGT	3 cut(s)	132, 388, 569
HpyCH4V	TGCA	2 cut(s)	233, 242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 54, 239, 662
HpyF3I	CTNAG	2 cut(s)	628, 636
Hsp92II	CATG	5 cut(s)	304, 361, 475, 493, 953
HspAI	GCGC	3 cut(s)	292, 343, 487
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	259, 529, 554, 937, 1055
LmnI	GCTCC	6 cut(s)	4, 13, 111, 410, 637, 673
Lsp1109I	GCAGC	3 cut(s)	425, 649, 652
LweI	GCATC	2 cut(s)	220, 643
MabI	ACCWGGT	1 cut(s)	192
MaeI	CTAG	1 cut(s)	1041
MaeIII	GTNAC	3 cut(s)	196, 336, 725
MalI	GATC	5 cut(s)	261, 531, 556, 939, 1057
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	5 cut(s)	259, 529, 554, 937, 1055
MboII	GAAGA	6 cut(s)	170, 492, 520, 653, 875, 905
MflI	RGATCY	1 cut(s)	554
MluCI	AATT	4 cut(s)	19, 305, 520, 698
MlyI	GAGTC	2 cut(s)	155, 800
MmeI	TCCRAC	1 cut(s)	1011
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	2 cut(s)	393, 831
MslI	CAYNNNNRTG	2 cut(s)	472, 954
MspR9I	CCNGG	3 cut(s)	194, 717, 845
Mva1269I	GAATGC	2 cut(s)	244, 345
MvaI	CCWGG	3 cut(s)	194, 717, 845
MwoI	GCNNNNNNNGC	4 cut(s)	13, 54, 239, 662
NdeII	GATC	5 cut(s)	259, 529, 554, 937, 1055
NlaIII	CATG	5 cut(s)	304, 361, 475, 493, 953
NlaIV	GGNNCC	4 cut(s)	6, 249, 556, 625
NmuCI	GTSAC	1 cut(s)	725
NsbI	TGCGCA	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	2 cut(s)	475, 493
OliI	CACNNNNGTG	1 cut(s)	472
PaeI	GCATGC	1 cut(s)	493
PagI	TCATGA	1 cut(s)	357
PciI	ACATGT	1 cut(s)	471
PctI	GAATGC	2 cut(s)	244, 345
PfeI	GAWTC	1 cut(s)	1019
PflMI	CCANNNNNTGG	1 cut(s)	925
PfoI	TCCNGGA	1 cut(s)	715
PkrI	GCNGC	4 cut(s)	56, 415, 664, 667
PleI	GAGTC	2 cut(s)	154, 799
PpsI	GAGTC	2 cut(s)	154, 799
PpuMI	RGGWCCY	1 cut(s)	248
PscI	ACATGT	1 cut(s)	471
PsiI	TTATAA	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	248
Psp6I	CCWGG	3 cut(s)	192, 715, 843
PspGI	CCWGG	3 cut(s)	192, 715, 843
PspN4I	GGNNCC	4 cut(s)	6, 249, 556, 625
PspPI	GGNCC	1 cut(s)	248
PspPPI	RGGWCCY	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	554
RsaI	GTAC	4 cut(s)	317, 571, 948, 1045
RsaNI	GTAC	4 cut(s)	316, 570, 947, 1044
RseI	CAYNNNNRTG	2 cut(s)	472, 954
SaqAI	TTAA	2 cut(s)	393, 831
SatI	GCNGC	4 cut(s)	55, 414, 663, 666
Sau3AI	GATC	5 cut(s)	259, 529, 554, 937, 1055
Sau96I	GGNCC	1 cut(s)	248
ScaI	AGTACT	1 cut(s)	571
SchI	GAGTC	2 cut(s)	155, 800
ScrFI	CCNGG	3 cut(s)	194, 717, 845
SexAI	ACCWGGT	1 cut(s)	192
SfaNI	GCATC	2 cut(s)	220, 643
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	472, 954
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	4 cut(s)	19, 305, 520, 698
SsiI	CCGC	5 cut(s)	54, 57, 78, 552, 730
SspMI	CTAG	1 cut(s)	1041
StyD4I	CCNGG	3 cut(s)	192, 715, 843
TaaI	ACNGT	3 cut(s)	132, 388, 569
TaqI	TCGA	3 cut(s)	105, 217, 258
TasI	AATT	4 cut(s)	19, 305, 520, 698
TatI	WGTACW	3 cut(s)	315, 569, 946
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	1019
Tru1I	TTAA	2 cut(s)	393, 831
Tru9I	TTAA	2 cut(s)	393, 831
TscAI	CASTG	2 cut(s)	55, 880
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	3 cut(s)	413, 662, 665
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	3 cut(s)	91, 317, 462
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	2 cut(s)	55, 880
Van91I	CCANNNNNTGG	1 cut(s)	925
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	2 cut(s)	19, 698
XceI	RCATGY	2 cut(s)	475, 493
XspI	CTAG	1 cut(s)	1041
ZrmI	AGTACT	1 cut(s)	571
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.