Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Forward (+)

3119445 .. 3120197

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG047500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTTGATGAGCCTCTCCAAGTAGATGGAAATGGAGAAGCATGGGAAAGCTATTCACAAGAAGATGACTTTCCAACCAGTAATAGTATCCCAGATTCTCTTTCATTGGAGAGGTCTTGCACCCCACCAGGTTCAATGGAACTTCAGCATCAGAAGAATAATGTGGAAGACAGATCCTCTCAGGTGCCTGCGCATCCTAGAAATGAACCTCAACACGATGTTTCTAGATTGCCTGCCCATGCTTCGTATCCATACTATATGCCGGGGGTTGTCAATCAGGTTATGGGGTCATCATCAACTCAAGTGTATCAAAAGAATCTACACGACATGCCAAATCATGCCGCAGCAGCAATTATGCAACATTACAGTCATCTTGCACACTGCCCTCCACATGTTAATGGGATGACTTCATTCTCCTACTATCCGCTTAGTATATGCTTACAACCTGGTCAGATGCCTAACAATCATTCATGGCCATCCTTTGGAAGCTCATCTGCCAGTGAAGTGAAATTAAGTAAGGTTGACAGAAGAGAGGCAGCATTGATTAAATTTAGGCAGAAAAGAAAGGAGCGTTGCTTTGATAAAAAGATTAGGTATGTTAATCGAAAAAGACTTGCTGAAAGGAGGCCTCGTGTACGGGGACAATTTGTGAGGAAGGTAAATGGTGTAGATGTTGATCTCAATGGGCAACCTGCTTCTCTTGATGATGACGAGGATGATGAGGATGAGAAGGATGATGAGGAGCTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

250

Amino Acids

28.36

Weight (kDa)

5.76

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	177 - 219	1e-15	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	700
AccB1I	GGYRCC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	482
AciI	CCGC	2 cut(s)	342, 425
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	135
AjnI	CCWGG	2 cut(s)	127, 445
AluBI	AGCT	3 cut(s)	51, 489, 745
AluI	AGCT	3 cut(s)	51, 489, 745
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	2 cut(s)	473, 626
ApeKI	GCWGC	3 cut(s)	344, 347, 536
ApoI	RAATTY	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	184
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	356, 359, 548
BccI	CCATC	2 cut(s)	20, 484
BciT130I	CCWGG	2 cut(s)	129, 447
BciVI	GTATCC	2 cut(s)	98, 258
BcnI	CCSGG	1 cut(s)	264
BfaI	CTAG	2 cut(s)	198, 225
BfuAI	ACCTGC	1 cut(s)	700
BfuI	GTATCC	2 cut(s)	98, 258
BisI	GCNGC	4 cut(s)	342, 345, 348, 537
BlsI	GCNGC	4 cut(s)	343, 346, 349, 538
Bme1390I	CCNGG	3 cut(s)	129, 264, 447
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	3 cut(s)	129, 264, 447
BmsI	GCATC	3 cut(s)	157, 202, 444
BpiI	GAAGAC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	675
BsaJI	CCNNGG	1 cut(s)	263
BsaXI	ACNNNNNCTCC	3 cut(s)	616, 646, 734
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	78, 498
Bse8I	GATNNNNATC	1 cut(s)	675
BseBI	CCWGG	2 cut(s)	129, 447
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	6 cut(s)	193, 408, 476, 721, 730, 739
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	2 cut(s)	78, 498
BseXI	GCAGC	3 cut(s)	356, 359, 548
BshFI	GGCC	2 cut(s)	475, 628
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	654
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	654
BsnI	GGCC	2 cut(s)	475, 628
Bsp143I	GATC	2 cut(s)	173, 676
BspACI	CCGC	2 cut(s)	342, 425
BspANI	GGCC	2 cut(s)	475, 628
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	78, 498
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	2 cut(s)	173, 676
BssSI	CACGAG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	2 cut(s)	129, 447
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	523
BstC8I	GCNNGC	3 cut(s)	189, 234, 747
BstDEI	CTNAG	2 cut(s)	180, 428
BstF5I	GGATG	6 cut(s)	193, 408, 476, 721, 730, 739
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	176, 679
BstMBI	GATC	2 cut(s)	173, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	129, 447
BstNSI	RCATGY	2 cut(s)	331, 395
BstSCI	CCNGG	3 cut(s)	127, 262, 445
BstV1I	GCAGC	3 cut(s)	356, 359, 548
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	173
BsuI	GTATCC	2 cut(s)	98, 258
BsuRI	GGCC	2 cut(s)	475, 628
BtsCI	GGATG	6 cut(s)	193, 408, 476, 721, 730, 739
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	379, 505
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	3 cut(s)	189, 234, 747
CfoI	GCGC	1 cut(s)	193
CsiI	ACCWGGT	2 cut(s)	127, 445
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	6 cut(s)	42, 239, 328, 338, 392, 471
CviJI	RGCY	6 cut(s)	13, 51, 475, 489, 628, 745
CviKI_1	RGCY	6 cut(s)	13, 51, 475, 489, 628, 745
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	2 cut(s)	180, 428
DpnI	GATC	2 cut(s)	175, 678
DpnII	GATC	2 cut(s)	173, 676
EaeI	YGGCCR	1 cut(s)	473
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Eco147I	AGGCCT	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	127, 445
FaeI	CATG	6 cut(s)	45, 242, 331, 341, 395, 474
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	6 cut(s)	41, 238, 327, 337, 391, 470
Fnu4HI	GCNGC	4 cut(s)	342, 345, 348, 537
FokI	GGATG	6 cut(s)	180, 415, 463, 728, 737, 746
Fsp4HI	GCNGC	4 cut(s)	342, 345, 348, 537
FspBI	CTAG	2 cut(s)	198, 225
FspI	TGCGCA	1 cut(s)	192
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	4 cut(s)	342, 345, 348, 537
HaeIII	GGCC	2 cut(s)	475, 628
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	6 cut(s)	45, 242, 331, 341, 395, 474
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	2 cut(s)	95, 316
HpaII	CCGG	1 cut(s)	263
Hpy166II	GTNNAC	2 cut(s)	523, 635
Hpy188I	TCNGA	2 cut(s)	153, 453
Hpy188III	TCNNGA	2 cut(s)	225, 701
Hpy8I	GTNNAC	2 cut(s)	523, 635
HpyAV	CCTTC	2 cut(s)	649, 724
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	3 cut(s)	120, 358, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	180, 428
Hsp92II	CATG	6 cut(s)	45, 242, 331, 341, 395, 474
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	2 cut(s)	173, 676
LmnI	GCTCC	2 cut(s)	568, 742
Lsp1109I	GCAGC	3 cut(s)	356, 359, 548
LweI	GCATC	3 cut(s)	157, 202, 444
MabI	ACCWGGT	2 cut(s)	127, 445
MaeI	CTAG	2 cut(s)	198, 225
MalI	GATC	2 cut(s)	175, 678
MboI	GATC	2 cut(s)	173, 676
MboII	GAAGA	4 cut(s)	74, 166, 179, 540
MflI	RGATCY	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	475
MluCI	AATT	4 cut(s)	351, 509, 548, 644
MluNI	TGGCCA	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	475
MseI	TTAA	4 cut(s)	396, 512, 546, 600
MslI	CAYNNNNRTG	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	475
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	129, 264, 447
MvaI	CCWGG	2 cut(s)	129, 447
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	173, 676
NlaIII	CATG	6 cut(s)	45, 242, 331, 341, 395, 474
NlaIV	GGNNCC	1 cut(s)	186
NsbI	TGCGCA	1 cut(s)	192
NspI	RCATGY	2 cut(s)	331, 395
PceI	AGGCCT	1 cut(s)	628
PciI	ACATGT	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	95, 316
PflMI	CCANNNNNTGG	1 cut(s)	482
PkrI	GCNGC	4 cut(s)	343, 346, 349, 538
PscI	ACATGT	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	127, 445
PspGI	CCWGG	2 cut(s)	127, 445
PspN4I	GGNNCC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	4 cut(s)	396, 512, 546, 600
SatI	GCNGC	4 cut(s)	342, 345, 348, 537
Sau3AI	GATC	2 cut(s)	173, 676
ScrFI	CCNGG	3 cut(s)	129, 264, 447
SexAI	ACCWGGT	2 cut(s)	127, 445
SfaNI	GCATC	3 cut(s)	157, 202, 444
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	4 cut(s)	351, 509, 548, 644
SseBI	AGGCCT	1 cut(s)	628
SsiI	CCGC	2 cut(s)	342, 425
SspMI	CTAG	2 cut(s)	198, 225
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	3 cut(s)	127, 262, 445
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	604
TasI	AATT	4 cut(s)	351, 509, 548, 644
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	95, 316
Tru1I	TTAA	4 cut(s)	396, 512, 546, 600
Tru9I	TTAA	4 cut(s)	396, 512, 546, 600
TscAI	CASTG	2 cut(s)	386, 505
TseI	GCWGC	3 cut(s)	344, 347, 536
TspDTI	ATGAA	4 cut(s)	93, 219, 399, 459
TspRI	CASTG	2 cut(s)	386, 505
Van91I	CCANNNNNTGG	1 cut(s)	482
XapI	RAATTY	1 cut(s)	548
XbaI	TCTAGA	1 cut(s)	224
XceI	RCATGY	2 cut(s)	331, 395
XspI	CTAG	2 cut(s)	198, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.