Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Reverse (-)

57632717 .. 57633514

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0445100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCAACTAAGAATATGATCATGATCTTGGTTCTAGTTATTAGCACCATCTTAGCAATTGGTGTAGTAAGCGCACAAAAAGACACCAATAGCATGAGATTGGCAGCTCGTGACGCCATAACCCTGGCCGTCAGCGAGATTAGCAACACTCAAAAGTTCATCAACACTATCCCAAGGCTCAAGATGGTCGAGACGGCAATGCCTAATGAAGCGGCGCTTGGTAGTTGCGTGGTGGGTTTGATCGACAGCTTGAGCAATGCGCATAGTGTGCTTCAGAGGATGCGACATCTTAACAAGGCAACGTTACCCTTCATTGATTCAGATGTCGATGCCTTGAAGAGCGCGGTGGTGAGTCGCATTGCGAGCTTCAACAACGTGTGCCAAGTCGGGCTGAAGGATGTCGACAAGACCATCGTGCTGATGCTGAATCGGAAACTAGAGGACATCATGATGCTGTCTAATAATGTGATTAATCATGTCTCTGAAATCAAACGTACTGAGCAACTGATCAAGAATTCAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

174

Amino Acids

19.0

Weight (kDa)

9.26

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	344
AciI	CCGC	2 cut(s)	212, 344
AclI	AACGTT	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	2 cut(s)	257, 413
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	337, 370
AjnI	CCWGG	1 cut(s)	123
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	107, 249, 366
AluI	AGCT	3 cut(s)	107, 249, 366
Alw26I	GTCTC	2 cut(s)	185, 484
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	514
AseI	ATTAAT	1 cut(s)	471
AspLEI	GCGC	4 cut(s)	74, 217, 262, 344
AsuHPI	GGTGA	1 cut(s)	361
BauI	CACGAG	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	3 cut(s)	56, 178, 419
BceAI	ACGGC	2 cut(s)	113, 210
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	2 cut(s)	18, 507
BcoDI	GTCTC	2 cut(s)	185, 484
BfaI	CTAG	2 cut(s)	35, 437
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	2 cut(s)	105, 213
BlsI	GCNGC	2 cut(s)	106, 214
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	4 cut(s)	270, 319, 411, 441
BpuEI	CTTGAG	2 cut(s)	164, 271
BsaBI	GATNNNNATC	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	123, 173
Bse3DI	GCAATG	3 cut(s)	204, 262, 357
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	123, 173
BseGI	GGATG	2 cut(s)	285, 403
BseJI	GATNNNNATC	1 cut(s)	23
BseMI	GCAATG	3 cut(s)	204, 262, 357
BseMII	CTCAG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	185, 484
BsmBI	CGTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	18, 24, 240, 507
BspACI	CCGC	2 cut(s)	212, 344
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	2 cut(s)	21, 447
BspQI	GCTCTTC	1 cut(s)	332
BsrDI	GCAATG	3 cut(s)	204, 262, 357
BssECI	CCNNGG	2 cut(s)	123, 173
BssMI	GATC	4 cut(s)	18, 24, 240, 507
BssNI	GRCGYC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	173
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	3 cut(s)	9, 52, 498
BstF5I	GGATG	2 cut(s)	285, 403
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	4 cut(s)	74, 217, 262, 344
BstKTI	GATC	4 cut(s)	21, 27, 243, 510
BstMAI	GTCTC	2 cut(s)	185, 484
BstMBI	GATC	4 cut(s)	18, 24, 240, 507
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 141, 268, 363
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	285, 403
Cac8I	GCNNGC	1 cut(s)	364
CciI	TCATGA	2 cut(s)	21, 447
CfoI	GCGC	4 cut(s)	74, 217, 262, 344
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	4 cut(s)	22, 94, 448, 476
CviJI	RGCY	6 cut(s)	107, 128, 178, 249, 366, 391
CviKI_1	RGCY	6 cut(s)	107, 128, 178, 249, 366, 391
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	3 cut(s)	9, 52, 498
DpnI	GATC	4 cut(s)	20, 26, 242, 509
DpnII	GATC	4 cut(s)	18, 24, 240, 507
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	257, 413
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	4 cut(s)	25, 97, 451, 479
FaiI	YATR	7 cut(s)	17, 23, 95, 119, 264, 449, 477
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	4 cut(s)	21, 93, 447, 475
FbaI	TGATCA	2 cut(s)	18, 507
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	105, 213
FokI	GGATG	2 cut(s)	292, 410
Fsp4HI	GCNGC	2 cut(s)	105, 213
FspAI	RTGCGCAY	1 cut(s)	261
FspBI	CTAG	2 cut(s)	35, 437
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	4 cut(s)	73, 216, 261, 343
GluI	GCNGC	2 cut(s)	105, 213
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	128
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	4 cut(s)	74, 217, 262, 344
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	25, 97, 451, 479
Hin6I	GCGC	4 cut(s)	72, 215, 260, 342
HinP1I	GCGC	4 cut(s)	72, 215, 260, 342
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	3 cut(s)	317, 352, 427
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	4 cut(s)	276, 322, 432, 484
Hpy188III	TCNNGA	7 cut(s)	22, 110, 181, 190, 448, 511, 519
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	319, 388
HpyCH4IV	ACGT	3 cut(s)	302, 375, 493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 141, 268, 363
HpyF3I	CTNAG	3 cut(s)	9, 52, 498
HpySE526I	ACGT	3 cut(s)	302, 375, 493
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	25, 97, 451, 479
HspAI	GCGC	4 cut(s)	72, 215, 260, 342
Ksp22I	TGATCA	2 cut(s)	18, 507
Kzo9I	GATC	4 cut(s)	18, 24, 240, 507
LguI	GCTCTTC	1 cut(s)	332
LpnPI	CCDG	3 cut(s)	110, 137, 504
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	4 cut(s)	270, 319, 411, 441
MaeI	CTAG	2 cut(s)	35, 437
MaeII	ACGT	3 cut(s)	302, 375, 493
MaeIII	GTNAC	2 cut(s)	110, 303
MalI	GATC	4 cut(s)	20, 26, 242, 509
MboI	GATC	4 cut(s)	18, 24, 240, 507
MboII	GAAGA	1 cut(s)	349
MfeI	CAATTG	1 cut(s)	57
MluCI	AATT	2 cut(s)	57, 514
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	2 cut(s)	270, 433
MseI	TTAA	2 cut(s)	291, 471
MslI	CAYNNNNRTG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	113, 141, 268, 363
NdeII	GATC	4 cut(s)	18, 24, 240, 507
NlaIII	CATG	4 cut(s)	25, 97, 451, 479
NmuCI	GTSAC	1 cut(s)	110
NsbI	TGCGCA	1 cut(s)	261
PagI	TCATGA	2 cut(s)	21, 447
PciSI	GCTCTTC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	317, 427
PkrI	GCNGC	2 cut(s)	106, 214
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PshBI	ATTAAT	1 cut(s)	471
Psp1406I	AACGTT	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
RseI	CAYNNNNRTG	1 cut(s)	449
SalI	GTCGAC	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	291, 471
SatI	GCNGC	2 cut(s)	105, 213
Sau3AI	GATC	4 cut(s)	18, 24, 240, 507
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	6 cut(s)	109, 251, 305, 368, 378, 496
SfaNI	GCATC	4 cut(s)	270, 319, 411, 441
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	179, 250
SmoI	CTYRAG	2 cut(s)	179, 250
Sse9I	AATT	2 cut(s)	57, 514
SsiI	CCGC	2 cut(s)	212, 344
SspMI	CTAG	2 cut(s)	35, 437
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	173
TaiI	ACGT	3 cut(s)	305, 378, 496
TaqI	TCGA	4 cut(s)	189, 243, 327, 402
TasI	AATT	2 cut(s)	57, 514
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	317, 427
Tru1I	TTAA	2 cut(s)	291, 471
Tru9I	TTAA	2 cut(s)	291, 471
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	148, 222, 301
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	2 cut(s)	35, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.