Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Forward (+)

3235611 .. 3241919

Gene Structure 6309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG047700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGATATGGATCCTAAGGAGCTCAATTTGAACAAAGGACCTGAAGGTTGCGGCGGCGGCGGCGGTGGTGAGGGGTTTATAGATAGGAGCAAGGTGAGGATTTTGCTCTGCGATAACGACGAGTCCAGCTCCGAAGAAGTTCTCAGGCTTCTTTTGAAATGCTCTTACCAAGTCACTTCGGTCAAGTCTCCTCGGCAGGTGATTGATGCATTGAATGCAGAGGGACCTGATATTGATATCATACTTGCCGAAGTCGACCTTCCAATGAGAAAAGGAACCAGAATGTTGAAGTACATCACACGGCATAGAGAGTTGAGGCGCATTCCTGTGATCATGATGTCGGCACAGGATGAGGTCTCTACTGTTGTCAAGTGCCTGAGGCTTGGAGCGGCAGACTATCTTGTAAAGCCTTTACGAACTAATGAGCTTTTAAACTTGTGGACGCACATGTGGAGAAGAAGACACATGCTTGGACTTGCAGAGAAGAACGTGTTTAGTTATGACTTTGATACAGTTGTATCAGATCCTAGTGATCCTACTACAAACTCATTCTCGGATGATACAGAAGAGAAGTCTCAGAAGAGTGCCAATCCAGAGATACCTGTTGCTGCTGCCACGGAGCCTCCACTGGATGATCAATTAGAGTTTCAGAGTGATGTTCCAGAAATAAGTGACCGCCAAACTGGTGAGCCACTTATGGCAAATGATGTGCTGCTTTTAATTTTGGCATCTCCTGGCTTGGAATATCTTTTATGTCTGTTTCATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

256

Amino Acids

28.56

Weight (kDa)

4.76

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	34 - 145	6.3e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccBSI	CCGCTC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	7 cut(s)	51, 54, 57, 60, 63, 389, 676
AclWI	GGATC	4 cut(s)	5, 18, 518, 527
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	293
AflIII	ACRYGT	2 cut(s)	447, 489
AgsI	TTSAA	4 cut(s)	31, 157, 214, 289
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	3 cut(s)	22, 129, 427
AluI	AGCT	3 cut(s)	22, 129, 427
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	3 cut(s)	192, 361, 579
AlwI	GGATC	4 cut(s)	5, 18, 518, 527
ApeKI	GCWGC	3 cut(s)	608, 611, 712
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	38, 224
AsuHPI	GGTGA	4 cut(s)	80, 106, 211, 698
AvaII	GGWCC	2 cut(s)	38, 224
AxyI	CCTNAGG	2 cut(s)	15, 377
BaeI	ACNNNNGTAYC	4 cut(s)	501, 501, 534, 534
BamHI	GGATCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	595, 598, 699
BceAI	ACGGC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	735
BclI	TGATCA	2 cut(s)	330, 634
BcoDI	GTCTC	3 cut(s)	192, 361, 579
BfaI	CTAG	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	8 cut(s)	52, 55, 58, 61, 390, 609, 612, 713
BlsI	GCNGC	8 cut(s)	53, 56, 59, 62, 391, 610, 613, 714
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	2 cut(s)	38, 224
BmgT120I	GGNCC	2 cut(s)	38, 224
BmiI	GGNNCC	4 cut(s)	12, 225, 277, 621
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	2 cut(s)	196, 737
BpiI	GAAGAC	1 cut(s)	466
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	191, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bse1I	ACTGG	2 cut(s)	633, 688
Bse21I	CCTNAGG	2 cut(s)	15, 377
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	191, 615
BseGI	GGATG	3 cut(s)	355, 562, 637
BseJI	GATNNNNATC	1 cut(s)	9
BseMII	CTCAG	3 cut(s)	157, 368, 590
BseNI	ACTGG	2 cut(s)	633, 688
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	595, 598, 699
BsiHKAI	GWGCWC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	237
BsmAI	GTCTC	3 cut(s)	192, 361, 579
BsmFI	GGGAC	1 cut(s)	237
BsmI	GAATGC	2 cut(s)	220, 321
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	5 cut(s)	10, 330, 523, 532, 634
BspACI	CCGC	7 cut(s)	51, 54, 57, 60, 63, 389, 676
BspCNI	CTCAG	3 cut(s)	156, 369, 589
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	4 cut(s)	12, 225, 277, 621
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	4 cut(s)	5, 18, 518, 527
BspTNI	GGTCTC	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	633, 688
BssECI	CCNNGG	2 cut(s)	191, 615
BssMI	GATC	5 cut(s)	10, 330, 523, 532, 634
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	364, 514
Bst6I	CTCTTC	2 cut(s)	561, 575
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstDEI	CTNAG	4 cut(s)	15, 143, 377, 576
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	3 cut(s)	355, 562, 637
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	13, 333, 526, 535, 637
BstMAI	GTCTC	3 cut(s)	192, 361, 579
BstMBI	GATC	5 cut(s)	10, 330, 523, 532, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 60, 215
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	2 cut(s)	451, 469
BstSCI	CCNGG	1 cut(s)	733
BstV1I	GCAGC	3 cut(s)	595, 598, 699
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	2 cut(s)	10, 523
BstYI	RGATCY	2 cut(s)	10, 523
Bsu36I	CCTNAGG	2 cut(s)	15, 377
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	3 cut(s)	355, 562, 637
BtsIMutI	CAGTG	1 cut(s)	626
BveI	ACCTGC	1 cut(s)	187
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	38, 224
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	4 cut(s)	334, 448, 466, 764
CviJI	RGCY	9 cut(s)	22, 129, 148, 382, 409, 427, 622, 691, 738
CviKI_1	RGCY	9 cut(s)	22, 129, 148, 382, 409, 427, 622, 691, 738
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	4 cut(s)	15, 143, 377, 576
DpnI	GATC	5 cut(s)	12, 332, 525, 534, 636
DpnII	GATC	5 cut(s)	10, 330, 523, 532, 634
DraI	TTTAAA	1 cut(s)	432
Eam1104I	CTCTTC	2 cut(s)	561, 575
EarI	CTCTTC	2 cut(s)	561, 575
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	38, 224
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	63
Eco81I	CCTNAGG	2 cut(s)	15, 377
EcoICRI	GAGCTC	1 cut(s)	22
EcoO109I	RGGNCCY	2 cut(s)	38, 224
EcoRII	CCWGG	1 cut(s)	733
EcoRV	GATATC	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	4 cut(s)	337, 451, 469, 767
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	4 cut(s)	333, 447, 465, 763
FbaI	TGATCA	2 cut(s)	330, 634
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	8 cut(s)	52, 55, 58, 61, 390, 609, 612, 713
FokI	GGATG	3 cut(s)	362, 569, 644
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	8 cut(s)	52, 55, 58, 61, 390, 609, 612, 713
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	8 cut(s)	52, 55, 58, 61, 390, 609, 612, 713
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	337, 451, 469, 767
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	4 cut(s)	80, 106, 211, 698
Hpy166II	GTNNAC	2 cut(s)	256, 441
Hpy188I	TCNGA	5 cut(s)	133, 523, 556, 579, 651
Hpy188III	TCNNGA	3 cut(s)	334, 593, 662
Hpy8I	GTNNAC	2 cut(s)	256, 441
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	38, 269
HpyCH4III	ACNGT	2 cut(s)	364, 514
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	3 cut(s)	209, 218, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 60, 215
HpyF3I	CTNAG	4 cut(s)	15, 143, 377, 576
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	4 cut(s)	337, 451, 469, 767
HspAI	GCGC	1 cut(s)	319
Ksp22I	TGATCA	2 cut(s)	330, 634
Kzo9I	GATC	5 cut(s)	10, 330, 523, 532, 634
LmnI	GCTCC	5 cut(s)	19, 87, 134, 386, 619
Lsp1109I	GCAGC	3 cut(s)	595, 598, 699
LweI	GCATC	2 cut(s)	196, 737
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	172, 671
MalI	GATC	5 cut(s)	12, 332, 525, 534, 636
MbiI	CCGCTC	1 cut(s)	389
MboI	GATC	5 cut(s)	10, 330, 523, 532, 634
MboII	GAAGA	6 cut(s)	146, 468, 471, 496, 578, 592
MflI	RGATCY	2 cut(s)	10, 523
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	3 cut(s)	25, 638, 720
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	8 cut(s)	64, 90, 201, 214, 309, 346, 372, 633
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	3 cut(s)	431, 719, 769
MslI	CAYNNNNRTG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	2 cut(s)	220, 321
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	57, 60, 215
NdeII	GATC	5 cut(s)	10, 330, 523, 532, 634
NlaIII	CATG	4 cut(s)	337, 451, 469, 767
NlaIV	GGNNCC	4 cut(s)	12, 225, 277, 621
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	172, 671
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	2 cut(s)	451, 469
PagI	TCATGA	1 cut(s)	333
PaqCI	CACCTGC	1 cut(s)	187
PciI	ACATGT	1 cut(s)	447
PctI	GAATGC	2 cut(s)	220, 321
PdmI	GAANNNNTTC	1 cut(s)	138
PkrI	GCNGC	8 cut(s)	53, 56, 59, 62, 391, 610, 613, 714
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	2 cut(s)	38, 224
PscI	ACATGT	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	24
Psp5II	RGGWCCY	2 cut(s)	38, 224
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	4 cut(s)	12, 225, 277, 621
PspPI	GGNCC	2 cut(s)	38, 224
PspPPI	RGGWCCY	2 cut(s)	38, 224
PsuI	RGATCY	2 cut(s)	10, 523
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	254
SaqAI	TTAA	3 cut(s)	431, 719, 769
SatI	GCNGC	8 cut(s)	52, 55, 58, 61, 390, 609, 612, 713
Sau3AI	GATC	5 cut(s)	10, 330, 523, 532, 634
Sau96I	GGNCC	2 cut(s)	38, 224
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	196, 737
SinI	GGWCC	2 cut(s)	38, 224
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	25, 638, 720
SsiI	CCGC	7 cut(s)	51, 54, 57, 60, 63, 389, 676
SspMI	CTAG	1 cut(s)	528
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	733
TaaI	ACNGT	2 cut(s)	364, 514
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	1 cut(s)	255
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	3 cut(s)	25, 638, 720
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	5 cut(s)	54, 57, 60, 63, 392
Tru1I	TTAA	3 cut(s)	431, 719, 769
Tru9I	TTAA	3 cut(s)	431, 719, 769
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	2 cut(s)	172, 671
TseI	GCWGC	3 cut(s)	608, 611, 712
Tsp45I	GTSAC	2 cut(s)	172, 671
TspDTI	ATGAA	1 cut(s)	752
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	633
VpaK11BI	GGWCC	2 cut(s)	38, 224
XceI	RCATGY	2 cut(s)	451, 469
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.