Prupe.5G198000_v2.0.a1

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
15983319 .. 15987344
4026 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G198000.1

Sequence Viewer

Length: 1509 bp
ATGGAGTCTAAGGAGCTGAATTTGAACAGAGACTGTGAAGCTGGTGATAGCGGCGGCGGCGGCGGCGGTGCTGATGGGTTCATAGACAGGAGCAGAGTGAGAATCTTGTTGTGCGATAACAACGAGTACAGTTCGGAAGAGGTTTTCACGCTTCTTGTGAAATGCTCTTACCAGGTTATTTCCGTGAGGTCTCCTAGACAGGTGATTGATGCATTGAATGCAGAGGGGCCTGATATCGATCTCATACTTGCTGAAGTTGACCTTCCAATGAACAAAGGCATGAAAATGTTGAAGTACATCACACGGGATAGAGAGTTAAGGCGCATTCCTGTAATCATGATGTCGGCAAAAGACGAGGTCTCTACTGTTGTTAAGTGCTTGAAGCTTGGAGCAGCAGACTATCTCGTGAAGCCTTTACGAACTAATGAGCTTCTAAACTTGTGGACACACATGTGGAGAAGAAGGCGCATGCTTGGGCTAGCAGAGAAGAACATTTTGAATCATGTTGATCCAGTGATATCAGACCCTAGCGGATCTAATACAAACAGTACTACCTTATTCTCGGATGACACAGATGACAAGTCTGCCAATCCAGAGATAGGAATGTCAGCTCATCGGGAAGATAAGTCTGCTGCTTTTGTGGAGCTTCCACCCAAGAATATATCAGAATTTCGGCCTGATGTTCCTGGAATAAGTGACCGACAAACTGGAAAATTTTTATCTGGCCCAAAAAAGAGCGAACTAAAGATTGGCGAGTCATCTGCCTTCTTTACCTATGTTAAATCAAGCAAACTTACAATCAACTCTCAAGTGGTTGCCCATGTTGAAGACATTACCGCTGAACATTTGAGGATGGAAGAGAAACATCAAGCATGTGGTCTCCAAGTGGTTGATAATCCCCAAGTACATGGAAATGGAGAGGCATGGGAAAGCTTTTCACAAGGAGACGACTTGCCAAGCAGCAATACTGCTTATCCATTTATATGTCTGGGGCGTGTCAATCAAGTTATGATGTCATCATCAGCCCATGTTTATCAAAAGAATCTGCATGATATGCAAAATCATGCTACAACAGCTATTATGCCACAATACAATCATCTTCCACACTGCCCTCCACATGTAAATGGGATGGCGTCATTTCCCTATTACCCGGTTAGTATATGCTTACAACCTGGTCAAATGCCTAATACTCATTCATGGCCATCATTTGGAAACTCATCTTCAACCGAAGTGAATCTAAATAAGGTTGACAGAAGGGAGGCAGCATTGATTAAATTTAGGCAAAAGAGAAAGGAGCGGTGTTTTGACAAAAAGATCCGGTATGTTAATCGAAAACGACTTGCCGAAAGGAGGCCTCGTGTGCGGGGACAGTTTGTGAGGAAGTTAAATGGTGTAAATGTGGATCTTAATGGTGAACCTGCTTCTGTTGATGATGATGATGAGGAGGATGAAAAGGATGATGAGGAGCTTGTGTCAAGGGATTCCTCCCCAGAAGATGGTGCTTCTTGA

Protein Analysis

503

Amino Acids

56.28

Weight (kDa)

5.92

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1426
AccB7I CCANNNNNTGG 2 cut(s) 1208, 1496
AccBSI CCGCTC 1 cut(s) 1297
AclWI GGATC 4 cut(s) 503, 541, 1309, 1410
AcoI YGGCCR 1 cut(s) 1199
AcsI RAATTY 4 cut(s) 19, 668, 713, 1274
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 1133
AfaI GTAC 4 cut(s) 128, 296, 550, 906
AfiI CCNNNNNNNGG 4 cut(s) 599, 1208, 1350, 1496
AflIII ACRYGT 2 cut(s) 450, 1117
AgsI TTSAA 7 cut(s) 25, 217, 292, 382, 499, 827, 1224
AjnI CCWGG 3 cut(s) 171, 685, 1171
AjuI GAANNNNNNNTTGG 2 cut(s) 732, 764
AleI CACNNNNGTG 1 cut(s) 451
AluBI AGCT 9 cut(s) 16, 41, 385, 430, 611, 646, 933, 1076, 1468
AluI AGCT 9 cut(s) 16, 41, 385, 430, 611, 646, 933, 1076, 1468
Alw26I GTCTC 5 cut(s) 24, 195, 364, 884, 939
AlwI GGATC 4 cut(s) 503, 541, 1309, 1410
AlwNI CAGNNNCTG 1 cut(s) 33
AoxI GGCC 5 cut(s) 227, 674, 724, 1199, 1352
ApeKI GCWGC 4 cut(s) 392, 632, 960, 1262
ApoI RAATTY 4 cut(s) 19, 668, 713, 1274
AspLEI GCGC 2 cut(s) 324, 468
AspS9I GGNCC 2 cut(s) 227, 725
AsuC2I CCSGG 1 cut(s) 1151
AsuHPI GGTGA 3 cut(s) 56, 214, 1424
AsuNHI GCTAGC 1 cut(s) 478
BalI TGGCCA 1 cut(s) 1201
BauI CACGAG 2 cut(s) 404, 1356
BbsI GAAGAC 1 cut(s) 834
BbvI GCAGC 4 cut(s) 404, 619, 972, 1274
BccI CCATC 5 cut(s) 68, 847, 1123, 1210, 1490
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 3 cut(s) 173, 687, 1173
BcnI CCSGG 1 cut(s) 1151
BcoDI GTCTC 5 cut(s) 24, 195, 364, 884, 939
BfaI CTAG 3 cut(s) 195, 479, 528
BfuAI ACCTGC 1 cut(s) 1426
BisI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 393, 633, 961, 1263
BlsI GCNGC 9 cut(s) 53, 56, 59, 62, 65, 394, 634, 962, 1264
BmcAI AGTACT 1 cut(s) 550
Bme1390I CCNGG 4 cut(s) 173, 687, 1151, 1173
BmgT120I GGNCC 2 cut(s) 227, 725
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 4 cut(s) 173, 687, 1151, 1173
BmsI GCATC 1 cut(s) 199
BmtI GCTAGC 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 834
BpuEI CTTGAG 1 cut(s) 792
BpuMI CCSGG 1 cut(s) 1151
Bsa29I ATCGAT 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 1133
BsaI GGTCTC 3 cut(s) 195, 364, 884
BsaWI WCCGGW 1 cut(s) 1317
BsaXI ACNNNNNCTCC 4 cut(s) 1342, 1372, 1457, 1487
Bsc4I CCNNNNNNNGG 4 cut(s) 599, 1208, 1350, 1496
Bse1I ACTGG 2 cut(s) 512, 712
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 3 cut(s) 173, 687, 1173
BseCI ATCGAT 1 cut(s) 237
BseGI GGATG 5 cut(s) 571, 858, 1134, 1453, 1462
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 4 cut(s) 599, 1208, 1350, 1496
BseNI ACTGG 2 cut(s) 512, 712
BseRI GAGGAG 2 cut(s) 1457, 1478
BseXI GCAGC 4 cut(s) 404, 619, 972, 1274
BshFI GGCC 5 cut(s) 229, 676, 726, 1201, 1354
BshVI ATCGAT 1 cut(s) 237
BsiSI CCGG 2 cut(s) 1151, 1318
BslFI GGGAC 1 cut(s) 1380
BslI CCNNNNNNNGG 4 cut(s) 599, 1208, 1350, 1496
BsmAI GTCTC 5 cut(s) 24, 195, 364, 884, 939
BsmBI CGTCTC 1 cut(s) 939
BsmFI GGGAC 1 cut(s) 1380
BsmI GAATGC 2 cut(s) 223, 324
BsnI GGCC 5 cut(s) 229, 676, 726, 1201, 1354
Bso31I GGTCTC 3 cut(s) 195, 364, 884
Bsp143I GATC 5 cut(s) 238, 508, 533, 1314, 1402
BspANI GGCC 5 cut(s) 229, 676, 726, 1201, 1354
BspDI ATCGAT 1 cut(s) 237
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 1426
BspOI GCTAGC 1 cut(s) 482
BspPI GGATC 4 cut(s) 503, 541, 1309, 1410
BspTNI GGTCTC 3 cut(s) 195, 364, 884
BsrBI CCGCTC 1 cut(s) 1297
BsrI ACTGG 2 cut(s) 512, 712
BssMI GATC 5 cut(s) 238, 508, 533, 1314, 1402
BssNI GRCGYC 1 cut(s) 1133
BssSI CACGAG 2 cut(s) 404, 1356
Bst2BI CACGAG 2 cut(s) 404, 1356
Bst2UI CCWGG 3 cut(s) 173, 687, 1173
Bst4CI ACNGT 5 cut(s) 35, 131, 367, 548, 1371
Bst6I CTCTTC 2 cut(s) 132, 852
BstACI GRCGYC 1 cut(s) 1133
BstAPI GCANNNNNTGC 2 cut(s) 218, 1054
BstC8I GCNNGC 2 cut(s) 470, 480
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 5 cut(s) 571, 858, 1134, 1453, 1462
BstHHI GCGC 2 cut(s) 324, 468
BstKTI GATC 5 cut(s) 241, 511, 536, 1317, 1405
BstMAI GTCTC 5 cut(s) 24, 195, 364, 884, 939
BstMBI GATC 5 cut(s) 238, 508, 533, 1314, 1402
BstMWI GCNNNNNNNGC 7 cut(s) 57, 60, 63, 218, 1054, 1073, 1360
BstNI CCWGG 3 cut(s) 173, 687, 1173
BstNSI RCATGY 4 cut(s) 454, 472, 876, 1121
BstSCI CCNGG 4 cut(s) 171, 685, 1149, 1171
BstV1I GCAGC 4 cut(s) 404, 619, 972, 1274
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 3 cut(s) 533, 1314, 1402
BstXI CCANNNNNNTGG 1 cut(s) 908
BstYI RGATCY 3 cut(s) 533, 1314, 1402
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 5 cut(s) 229, 676, 726, 1201, 1354
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 5 cut(s) 571, 858, 1134, 1453, 1462
BtsI GCAGTG 1 cut(s) 1105
BtsIMutI CAGTG 2 cut(s) 519, 1105
BveI ACCTGC 1 cut(s) 1426
Cac8I GCNNGC 2 cut(s) 470, 480
CaiI CAGNNNCTG 1 cut(s) 33
CciI TCATGA 1 cut(s) 336
CfoI GCGC 2 cut(s) 324, 468
Cfr13I GGNCC 2 cut(s) 227, 725
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 1 cut(s) 1122
CsiI ACCWGGT 2 cut(s) 171, 1171
Csp6I GTAC 4 cut(s) 127, 295, 549, 905
CviQI GTAC 4 cut(s) 127, 295, 549, 905
DdeI CTNAG 1 cut(s) 9
DpnI GATC 5 cut(s) 240, 510, 535, 1316, 1404
DpnII GATC 5 cut(s) 238, 508, 533, 1314, 1402
EaeI YGGCCR 1 cut(s) 1199
Eam1104I CTCTTC 2 cut(s) 132, 852
EarI CTCTTC 2 cut(s) 132, 852
Eco147I AGGCCT 1 cut(s) 1354
Eco31I GGTCTC 3 cut(s) 195, 364, 884
Eco32I GATATC 2 cut(s) 235, 519
Eco57I CTGAAG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 3 cut(s) 171, 685, 1171
EcoRV GATATC 2 cut(s) 235, 519
EcoT22I ATGCAT 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 939
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 1380
FauI CCCGC 1 cut(s) 1356
Fnu4HI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 393, 633, 961, 1263
FokI GGATG 5 cut(s) 578, 865, 1141, 1460, 1469
Fsp4HI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 393, 633, 961, 1263
FspBI CTAG 3 cut(s) 195, 479, 528
GlaI GCGC 2 cut(s) 323, 467
GluI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 393, 633, 961, 1263
HaeIII GGCC 5 cut(s) 229, 676, 726, 1201, 1354
HapII CCGG 2 cut(s) 1151, 1318
HgaI GACGC 1 cut(s) 1122
HhaI GCGC 2 cut(s) 324, 468
Hin1I GRCGYC 1 cut(s) 1133
Hin6I GCGC 2 cut(s) 322, 466
HinP1I GCGC 2 cut(s) 322, 466
HincII GTYRAC 2 cut(s) 259, 1249
HindII GTYRAC 2 cut(s) 259, 1249
HindIII AAGCTT 2 cut(s) 383, 931
HinfI GANTC 7 cut(s) 5, 102, 499, 755, 1042, 1234, 1481
HpaII CCGG 2 cut(s) 1151, 1318
HphI GGTGA 3 cut(s) 56, 214, 1424
Hpy166II GTNNAC 4 cut(s) 259, 444, 1249, 1415
Hpy188I TCNGA 4 cut(s) 136, 523, 565, 667
Hpy188III TCNNGA 5 cut(s) 337, 406, 593, 617, 1506
Hpy8I GTNNAC 4 cut(s) 259, 444, 1249, 1415
HpyAV CCTTC 4 cut(s) 272, 456, 775, 1248
HpyCH4III ACNGT 5 cut(s) 35, 131, 367, 548, 1371
HpyCH4V TGCA 4 cut(s) 212, 221, 1048, 1057
HpyF10VI GCNNNNNNNGC 7 cut(s) 57, 60, 63, 218, 1054, 1073, 1360
HpyF3I CTNAG 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 1133
HspAI GCGC 2 cut(s) 322, 466
Kzo9I GATC 5 cut(s) 238, 508, 533, 1314, 1402
LmnI GCTCC 6 cut(s) 13, 90, 389, 643, 1294, 1465
Lsp1109I GCAGC 4 cut(s) 404, 619, 972, 1274
LweI GCATC 1 cut(s) 199
MabI ACCWGGT 2 cut(s) 171, 1171
MaeI CTAG 3 cut(s) 195, 479, 528
MaeIII GTNAC 1 cut(s) 695
MalI GATC 5 cut(s) 240, 510, 535, 1316, 1404
MbiI CCGCTC 1 cut(s) 1297
MboI GATC 5 cut(s) 238, 508, 533, 1314, 1402
MboII GAAGA 9 cut(s) 149, 471, 499, 632, 839, 869, 1091, 1212, 1505
MflI RGATCY 3 cut(s) 533, 1314, 1402
MlsI TGGCCA 1 cut(s) 1201
MluCI AATT 4 cut(s) 19, 668, 713, 1274
MluNI TGGCCA 1 cut(s) 1201
MlyI GAGTC 2 cut(s) 14, 764
Mox20I TGGCCA 1 cut(s) 1201
Mph1103I ATGCAT 1 cut(s) 214
MscI TGGCCA 1 cut(s) 1201
MseI TTAA 7 cut(s) 317, 372, 780, 1272, 1326, 1385, 1407
MslI CAYNNNNRTG 5 cut(s) 284, 451, 912, 982, 1122
Msp20I TGGCCA 1 cut(s) 1201
MspA1I CMGCKG 1 cut(s) 839
MspI CCGG 2 cut(s) 1151, 1318
MspR9I CCNGG 4 cut(s) 173, 687, 1151, 1173
Mva1269I GAATGC 2 cut(s) 223, 324
MvaI CCWGG 3 cut(s) 173, 687, 1173
MwoI GCNNNNNNNGC 7 cut(s) 57, 60, 63, 218, 1054, 1073, 1360
NciI CCSGG 1 cut(s) 1151
NdeII GATC 5 cut(s) 238, 508, 533, 1314, 1402
NheI GCTAGC 1 cut(s) 478
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 695
NsiI ATGCAT 1 cut(s) 214
NspI RCATGY 4 cut(s) 454, 472, 876, 1121
OliI CACNNNNGTG 1 cut(s) 451
PaeI GCATGC 1 cut(s) 472
PagI TCATGA 1 cut(s) 336
PceI AGGCCT 1 cut(s) 1354
PciI ACATGT 2 cut(s) 450, 1117
PctI GAATGC 2 cut(s) 223, 324
PfeI GAWTC 5 cut(s) 102, 499, 1042, 1234, 1481
PflFI GACNNNGTC 1 cut(s) 356
PflMI CCANNNNNTGG 2 cut(s) 1208, 1496
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 9 cut(s) 53, 56, 59, 62, 65, 394, 634, 962, 1264
PleI GAGTC 2 cut(s) 13, 763
PpsI GAGTC 2 cut(s) 13, 763
PscI ACATGT 2 cut(s) 450, 1117
Psp6I CCWGG 3 cut(s) 171, 685, 1171
PspGI CCWGG 3 cut(s) 171, 685, 1171
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 227, 725
PstNI CAGNNNCTG 1 cut(s) 33
PsuI RGATCY 3 cut(s) 533, 1314, 1402
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 4 cut(s) 128, 296, 550, 906
RsaNI GTAC 4 cut(s) 127, 295, 549, 905
RseI CAYNNNNRTG 5 cut(s) 284, 451, 912, 982, 1122
SaqAI TTAA 7 cut(s) 317, 372, 780, 1272, 1326, 1385, 1407
SatI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 393, 633, 961, 1263
Sau3AI GATC 5 cut(s) 238, 508, 533, 1314, 1402
Sau96I GGNCC 2 cut(s) 227, 725
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 2 cut(s) 14, 764
ScrFI CCNGG 4 cut(s) 173, 687, 1151, 1173
SexAI ACCWGGT 2 cut(s) 171, 1171
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 5 cut(s) 284, 451, 912, 982, 1122
SmlI CTYRAG 1 cut(s) 807
SmoI CTYRAG 1 cut(s) 807
SphI GCATGC 1 cut(s) 472
Sse9I AATT 4 cut(s) 19, 668, 713, 1274
SseBI AGGCCT 1 cut(s) 1354
SspMI CTAG 3 cut(s) 195, 479, 528
StuI AGGCCT 1 cut(s) 1354
StyD4I CCNGG 4 cut(s) 171, 685, 1149, 1171
TaaI ACNGT 5 cut(s) 35, 131, 367, 548, 1371
TaqI TCGA 2 cut(s) 237, 1330
TaqII GACCGA 1 cut(s) 714
TasI AATT 4 cut(s) 19, 668, 713, 1274
TatI WGTACW 4 cut(s) 126, 294, 548, 904
TauI GCSGC 5 cut(s) 54, 57, 60, 63, 66
TfiI GAWTC 5 cut(s) 102, 499, 1042, 1234, 1481
Tru1I TTAA 7 cut(s) 317, 372, 780, 1272, 1326, 1385, 1407
Tru9I TTAA 7 cut(s) 317, 372, 780, 1272, 1326, 1385, 1407
TscAI CASTG 2 cut(s) 519, 1112
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 4 cut(s) 392, 632, 960, 1262
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 5 cut(s) 70, 284, 296, 1185, 1464
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 2 cut(s) 519, 1112
Tth111I GACNNNGTC 1 cut(s) 356
Van91I CCANNNNNTGG 2 cut(s) 1208, 1496
XapI RAATTY 4 cut(s) 19, 668, 713, 1274
XceI RCATGY 4 cut(s) 454, 472, 876, 1121
XspI CTAG 3 cut(s) 195, 479, 528
ZrmI AGTACT 1 cut(s) 550
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.