Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003511.1

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Reverse (-)

199744 .. 203820

Gene Structure 4077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003511.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atgaagtgtggcgatgatgacgtggcggaggtggttgctcgctcgctattgcggtgttatttgcttggttttgggggggttttggatatggatatggatcctaaggagctcaatttgaacaaaggacctgaaggttgcggcggcggcggcggtggtgaggggtttatagataggagcaaggtgaggattttgctctgcgataacgacgagtccagctccgaagaagttctcaggcttcttttgaaatgctcttatcaagtcacttcggtcaagtctcctcggcaggtgatcgatgcattgaatgcagagggacctgatattgatatcatacttgccgaagtcgaccttccaatgagaaaaggaaccagaatgttgaagtacatcacacggcatagagagttgaggcgcattcctgtgatcatgatgtcagcacaggatgaggtctctactgttgtcaagtgcctgaggcttggagcggcagactatcttgtaaagcctttacgaactaatgagcttttaaacttgtggacacacatgtggagaagaagacacatgcttggacttgcagaaaagaacgtgtttagttatgactttgatacagttgtatcagatcctagtgatcctactacaaactcattctcggatgatacagaagagaagtctcagaagagtgccaatccagagatacctgtttctgctgccacggagcctccactggatgatcaattagagtttcagagtgatgttccagaaataagtgaccgccaaactggaaagttttcatctggcccaaaaaagagcgaactaaagattggggggtcatctgccttctttacctatgtcaaatcaagcacaattgaaaacaactcccaagtccatacaaaggataatggtgctgaacggtcaagagtggaagggaaacatccagcatgtagtcaacaaatggttgatgagtctctccaagtagatggaaatggagaagcatgggaaagctattcacaagaagatgactttccaaccagtaatagtatccctgattctctttcattggagaggtcttgcaccccacctggttcaatggaacttcagcatcagaagaatcatacggaagacagatctgtgaggaaggtaaatggtgtagatgttgatctcaatgggcaacctgcttctcttgatgatgacgaggatgatgaggatgagaaggatgatgaggagcttgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

407

Amino Acids

45.13

Weight (kDa)

4.59

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	274
Acc36I	ACCTGC	2 cut(s)	274, 1171
AccBSI	CCGCTC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	9 cut(s)	26, 52, 138, 141, 144, 147, 150, 476, 763
AclWI	GGATC	4 cut(s)	92, 105, 605, 614
AcuI	CTGAAG	2 cut(s)	150, 1070
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	883
AflIII	ACRYGT	2 cut(s)	534, 576
AgsI	TTSAA	6 cut(s)	118, 244, 301, 376, 860, 1077
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	795, 827
AleI	CACNNNNGTG	1 cut(s)	535
AluBI	AGCT	5 cut(s)	109, 216, 514, 993, 1216
AluI	AGCT	5 cut(s)	109, 216, 514, 993, 1216
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	4 cut(s)	279, 448, 666, 960
AlwI	GGATC	4 cut(s)	92, 105, 605, 614
AoxI	GGCC	1 cut(s)	787
ApeKI	GCWGC	1 cut(s)	698
Asp700I	GAANNNNTTC	2 cut(s)	225, 778
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	3 cut(s)	125, 311, 788
AsuHPI	GGTGA	3 cut(s)	167, 193, 298
AvaII	GGWCC	2 cut(s)	125, 311
AxyI	CCTNAGG	2 cut(s)	102, 464
BaeI	ACNNNNGTAYC	4 cut(s)	588, 588, 621, 621
BamHI	GGATCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	2 cut(s)	553, 1116
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	1 cut(s)	962
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	1071
BciVI	GTATCC	1 cut(s)	1040
BclI	TGATCA	2 cut(s)	417, 721
BcoDI	GTCTC	4 cut(s)	279, 448, 666, 960
BfaI	CTAG	1 cut(s)	615
BfuAI	ACCTGC	2 cut(s)	274, 1171
BfuI	GTATCC	1 cut(s)	1040
BglII	AGATCT	1 cut(s)	1115
BisI	GCNGC	6 cut(s)	139, 142, 145, 148, 477, 699
BlsI	GCNGC	6 cut(s)	140, 143, 146, 149, 478, 700
Bme1390I	CCNGG	1 cut(s)	1071
Bme18I	GGWCC	2 cut(s)	125, 311
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	125, 311, 788
BmiI	GGNNCC	4 cut(s)	99, 312, 364, 708
BmrFI	CCNGG	1 cut(s)	1071
BmsI	GCATC	2 cut(s)	283, 1099
BpiI	GAAGAC	2 cut(s)	553, 1116
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bsa29I	ATCGAT	1 cut(s)	291
BsaBI	GATNNNNATC	2 cut(s)	96, 1146
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	2 cut(s)	278, 702
BsaXI	ACNNNNNCTCC	3 cut(s)	694, 724, 1205
Bsc4I	CCNNNNNNNGG	1 cut(s)	883
Bse1I	ACTGG	3 cut(s)	720, 775, 1020
Bse21I	CCTNAGG	2 cut(s)	102, 464
Bse8I	GATNNNNATC	2 cut(s)	96, 1146
BseBI	CCWGG	1 cut(s)	1071
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	278, 702
BseGI	GGATG	7 cut(s)	442, 649, 724, 922, 1192, 1201, 1210
BseJI	GATNNNNATC	2 cut(s)	96, 1146
BseLI	CCNNNNNNNGG	1 cut(s)	883
BseMII	CTCAG	3 cut(s)	244, 455, 677
BseNI	ACTGG	3 cut(s)	720, 775, 1020
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	685
BshFI	GGCC	1 cut(s)	789
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	883
BsmAI	GTCTC	4 cut(s)	279, 448, 666, 960
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	2 cut(s)	307, 408
BsnI	GGCC	1 cut(s)	789
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	8 cut(s)	97, 288, 417, 610, 619, 721, 1115, 1147
BspACI	CCGC	9 cut(s)	26, 52, 138, 141, 144, 147, 150, 476, 763
BspANI	GGCC	1 cut(s)	789
BspCNI	CTCAG	3 cut(s)	243, 456, 676
BspDI	ATCGAT	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	99, 312, 364, 708
BspMI	ACCTGC	2 cut(s)	274, 1171
BspPI	GGATC	4 cut(s)	92, 105, 605, 614
BspTNI	GGTCTC	1 cut(s)	448
BsrBI	CCGCTC	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	720, 775, 1020
BssECI	CCNNGG	2 cut(s)	278, 702
BssMI	GATC	8 cut(s)	97, 288, 417, 610, 619, 721, 1115, 1147
Bst2UI	CCWGG	1 cut(s)	1071
Bst4CI	ACNGT	3 cut(s)	451, 601, 903
Bst6I	CTCTTC	2 cut(s)	648, 662
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	40, 44, 1218
BstDEI	CTNAG	4 cut(s)	102, 230, 464, 663
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	7 cut(s)	442, 649, 724, 922, 1192, 1201, 1210
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	8 cut(s)	100, 291, 420, 613, 622, 724, 1118, 1150
BstMAI	GTCTC	4 cut(s)	279, 448, 666, 960
BstMBI	GATC	8 cut(s)	97, 288, 417, 610, 619, 721, 1115, 1147
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 147, 302
BstNI	CCWGG	1 cut(s)	1071
BstNSI	RCATGY	3 cut(s)	538, 556, 933
BstSCI	CCNGG	1 cut(s)	1069
BstV1I	GCAGC	1 cut(s)	685
BstV2I	GAAGAC	2 cut(s)	553, 1116
BstX2I	RGATCY	3 cut(s)	97, 610, 1115
BstXI	CCANNNNNNTGG	1 cut(s)	968
BstYI	RGATCY	3 cut(s)	97, 610, 1115
Bsu15I	ATCGAT	1 cut(s)	291
Bsu36I	CCTNAGG	2 cut(s)	102, 464
BsuI	GTATCC	1 cut(s)	1040
BsuRI	GGCC	1 cut(s)	789
BsuTUI	ATCGAT	1 cut(s)	291
BtgI	CCRYGG	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	7 cut(s)	442, 649, 724, 922, 1192, 1201, 1210
BtsIMutI	CAGTG	1 cut(s)	713
BveI	ACCTGC	2 cut(s)	274, 1171
Cac8I	GCNNGC	3 cut(s)	40, 44, 1218
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	3 cut(s)	125, 311, 788
ClaI	ATCGAT	1 cut(s)	291
CsiI	ACCWGGT	1 cut(s)	1069
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	5 cut(s)	421, 535, 553, 930, 984
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	4 cut(s)	102, 230, 464, 663
DpnI	GATC	8 cut(s)	99, 290, 419, 612, 621, 723, 1117, 1149
DpnII	GATC	8 cut(s)	97, 288, 417, 610, 619, 721, 1115, 1147
DraI	TTTAAA	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	648, 662
EarI	CTCTTC	2 cut(s)	648, 662
EciI	GGCGGA	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	125, 311
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	150, 1070
Eco81I	CCTNAGG	2 cut(s)	102, 464
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	2 cut(s)	125, 311
EcoRII	CCWGG	1 cut(s)	1069
EcoRV	GATATC	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	5 cut(s)	424, 538, 556, 933, 987
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	5 cut(s)	420, 534, 552, 929, 983
FbaI	TGATCA	2 cut(s)	417, 721
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	6 cut(s)	139, 142, 145, 148, 477, 699
FokI	GGATG	7 cut(s)	449, 656, 731, 909, 1199, 1208, 1217
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	6 cut(s)	139, 142, 145, 148, 477, 699
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	6 cut(s)	139, 142, 145, 148, 477, 699
HaeIII	GGCC	1 cut(s)	789
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	5 cut(s)	424, 538, 556, 933, 987
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HincII	GTYRAC	2 cut(s)	343, 938
HindII	GTYRAC	2 cut(s)	343, 938
HinfI	GANTC	4 cut(s)	209, 953, 1037, 1099
HphI	GGTGA	3 cut(s)	167, 193, 298
Hpy166II	GTNNAC	3 cut(s)	343, 528, 938
Hpy188I	TCNGA	6 cut(s)	220, 610, 643, 666, 738, 1095
Hpy188III	TCNNGA	5 cut(s)	421, 680, 749, 906, 1172
Hpy8I	GTNNAC	3 cut(s)	343, 528, 938
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	6 cut(s)	125, 356, 838, 908, 1120, 1195
HpyCH4III	ACNGT	3 cut(s)	451, 601, 903
HpyCH4IV	ACGT	2 cut(s)	21, 576
HpyCH4V	TGCA	4 cut(s)	296, 305, 566, 1062
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 147, 302
HpyF3I	CTNAG	4 cut(s)	102, 230, 464, 663
HpySE526I	ACGT	2 cut(s)	21, 576
Hsp92II	CATG	5 cut(s)	424, 538, 556, 933, 987
HspAI	GCGC	1 cut(s)	406
Ksp22I	TGATCA	2 cut(s)	417, 721
Kzo9I	GATC	8 cut(s)	97, 288, 417, 610, 619, 721, 1115, 1147
LmnI	GCTCC	6 cut(s)	106, 174, 221, 473, 706, 1213
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	2 cut(s)	283, 1099
MabI	ACCWGGT	1 cut(s)	1069
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	2 cut(s)	21, 576
MaeIII	GTNAC	2 cut(s)	259, 758
MalI	GATC	8 cut(s)	99, 290, 419, 612, 621, 723, 1117, 1149
MbiI	CCGCTC	1 cut(s)	476
MboI	GATC	8 cut(s)	97, 288, 417, 610, 619, 721, 1115, 1147
MboII	GAAGA	8 cut(s)	233, 555, 558, 665, 679, 1016, 1108, 1121
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	3 cut(s)	97, 610, 1115
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	112, 725, 855
MlyI	GAGTC	2 cut(s)	218, 962
MmeI	TCCRAC	1 cut(s)	1040
Mph1103I	ATGCAT	1 cut(s)	298
MroXI	GAANNNNTTC	2 cut(s)	225, 778
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	2 cut(s)	413, 535
MspR9I	CCNGG	1 cut(s)	1071
MunI	CAATTG	1 cut(s)	855
Mva1269I	GAATGC	2 cut(s)	307, 408
MvaI	CCWGG	1 cut(s)	1071
MwoI	GCNNNNNNNGC	3 cut(s)	144, 147, 302
NdeII	GATC	8 cut(s)	97, 288, 417, 610, 619, 721, 1115, 1147
NlaIII	CATG	5 cut(s)	424, 538, 556, 933, 987
NlaIV	GGNNCC	4 cut(s)	99, 312, 364, 708
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	259, 758
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	3 cut(s)	538, 556, 933
OliI	CACNNNNGTG	1 cut(s)	535
PagI	TCATGA	1 cut(s)	420
PaqCI	CACCTGC	1 cut(s)	274
PciI	ACATGT	1 cut(s)	534
PctI	GAATGC	2 cut(s)	307, 408
PdmI	GAANNNNTTC	2 cut(s)	225, 778
PfeI	GAWTC	2 cut(s)	1037, 1099
PkrI	GCNGC	6 cut(s)	140, 143, 146, 149, 478, 700
PleI	GAGTC	2 cut(s)	217, 961
PpsI	GAGTC	2 cut(s)	217, 961
PpuMI	RGGWCCY	2 cut(s)	125, 311
PscI	ACATGT	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	111
Psp5II	RGGWCCY	2 cut(s)	125, 311
Psp6I	CCWGG	1 cut(s)	1069
PspGI	CCWGG	1 cut(s)	1069
PspN4I	GGNNCC	4 cut(s)	99, 312, 364, 708
PspPI	GGNCC	3 cut(s)	125, 311, 788
PspPPI	RGGWCCY	2 cut(s)	125, 311
PsuI	RGATCY	3 cut(s)	97, 610, 1115
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	2 cut(s)	413, 535
SacI	GAGCTC	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	6 cut(s)	139, 142, 145, 148, 477, 699
Sau3AI	GATC	8 cut(s)	97, 288, 417, 610, 619, 721, 1115, 1147
Sau96I	GGNCC	3 cut(s)	125, 311, 788
SchI	GAGTC	2 cut(s)	218, 962
ScrFI	CCNGG	1 cut(s)	1071
SduI	GDGCHC	1 cut(s)	111
SexAI	ACCWGGT	1 cut(s)	1069
SfaNI	GCATC	2 cut(s)	283, 1099
SinI	GGWCC	2 cut(s)	125, 311
SmiMI	CAYNNNNRTG	2 cut(s)	413, 535
Sse9I	AATT	3 cut(s)	112, 725, 855
SsiI	CCGC	9 cut(s)	26, 52, 138, 141, 144, 147, 150, 476, 763
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	1069
TaaI	ACNGT	3 cut(s)	451, 601, 903
TaiI	ACGT	2 cut(s)	24, 579
TaqI	TCGA	2 cut(s)	291, 342
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	3 cut(s)	112, 725, 855
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	5 cut(s)	141, 144, 147, 150, 479
TfiI	GAWTC	2 cut(s)	1037, 1099
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	2 cut(s)	259, 758
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	2 cut(s)	259, 758
TspDTI	ATGAA	3 cut(s)	17, 771, 1035
TspGWI	ACGGA	2 cut(s)	719, 1121
TspRI	CASTG	1 cut(s)	720
VpaK11BI	GGWCC	2 cut(s)	125, 311
XceI	RCATGY	3 cut(s)	538, 556, 933
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	2 cut(s)	225, 778
XspI	CTAG	1 cut(s)	615
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.