Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Forward (+)

21406105 .. 21406614

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCCGGGGGCTGTCAATCAAGTTATGATGTCATCGTCACCCCAAGTTTATCAAAATAATCTGCAAGACATGCAAAATCATGCTATGATGCCACAATACAATCATCTTCCACCCTGCCCTCCACACATGAATGGGATGGCTTCGTTCCCCTATTATAGTATATGCTTGCATCCTGGTCAGCAAATGCCGAATGCTCAGCCGTGGCCCTCATTTGGAAGTTCAGCTTCCACTGAAGTGAATCTAAATACGGTTGACAGAAGGGAGGCAGCATTGATTAAATTTAGGCAAAAAAGAAAGGAGCGGTGTTTTGATAAAAAGATCAGGTATGTAAATCGAAAGAAACTTGCCGAAAGGAGGCCTCGTGTTCGGGGACAGTTTGTGAGGAAGTTAAATGGTGTAAATGTGGATCTTAACGGCGTGCCTGCATCTGTTGAAGATGACGAGGAGGATGAAAGGGATGACGAGGAGCTTGCATCAAGGGATTCCTCCCCGGAAGATGGTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

170

Amino Acids

19.26

Weight (kDa)

6.9

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	87 - 129	3.9e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	301
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	212, 354, 497
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	172
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	224, 469
AluI	AGCT	2 cut(s)	224, 469
Alw21I	GWGCWC	1 cut(s)	505
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	2 cut(s)	203, 356
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	2 cut(s)	6, 491
AsuHPI	GGTGA	1 cut(s)	30
BauI	CACGAG	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	2 cut(s)	130, 491
BceAI	ACGGC	2 cut(s)	184, 430
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	6, 491
BisI	GCNGC	1 cut(s)	267
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	3 cut(s)	6, 174, 491
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	3 cut(s)	6, 174, 491
BmsI	GCATC	4 cut(s)	78, 178, 434, 482
Bpu1102I	GCTNAGC	1 cut(s)	195
BpuMI	CCSGG	2 cut(s)	6, 491
BsaJI	CCNNGG	3 cut(s)	5, 200, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 354, 497
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	5, 200, 489
BseGI	GGATG	4 cut(s)	141, 169, 454, 463
BseLI	CCNNNNNNNGG	3 cut(s)	212, 354, 497
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	458, 479
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	2 cut(s)	205, 358
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	5, 491
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	3 cut(s)	212, 354, 497
BsmFI	GGGAC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	205, 358
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	2 cut(s)	318, 406
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	2 cut(s)	205, 358
BspCNI	CTCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	414
BsrBI	CCGCTC	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	5, 200, 489
BssMI	GATC	2 cut(s)	318, 406
BssSI	CACGAG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	250, 375
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstC8I	GCNNGC	4 cut(s)	167, 419, 423, 471
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	4 cut(s)	141, 169, 454, 463
BstKTI	GATC	2 cut(s)	321, 409
BstMBI	GATC	2 cut(s)	318, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	4, 172, 489
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	205, 358
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	4 cut(s)	141, 169, 454, 463
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	4 cut(s)	167, 419, 423, 471
Cfr13I	GGNCC	1 cut(s)	204
CviAII	CATG	3 cut(s)	70, 80, 127
CviJI	RGCY	7 cut(s)	11, 140, 199, 205, 224, 358, 469
CviKI_1	RGCY	7 cut(s)	11, 140, 199, 205, 224, 358, 469
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	320, 408
DpnII	GATC	2 cut(s)	318, 406
Eco147I	AGGCCT	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	73, 83, 130
FaiI	YATR	9 cut(s)	26, 71, 81, 86, 128, 156, 161, 163, 327
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	3 cut(s)	69, 79, 126
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	4 cut(s)	148, 156, 461, 470
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	205, 358
HapII	CCGG	2 cut(s)	5, 491
Hin1II	CATG	3 cut(s)	73, 83, 130
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	238, 482
HpaII	CCGG	2 cut(s)	5, 491
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	253
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	250, 375
HpyCH4V	TGCA	5 cut(s)	64, 73, 169, 425, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	73, 83, 130
Kzo9I	GATC	2 cut(s)	318, 406
LmnI	GCTCC	3 cut(s)	298, 466, 508
LpnPI	CCDG	7 cut(s)	18, 127, 159, 186, 307, 435, 504
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	4 cut(s)	78, 178, 434, 482
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	2 cut(s)	320, 408
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	2 cut(s)	318, 406
MboII	GAAGA	3 cut(s)	98, 446, 506
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	1 cut(s)	278
MseI	TTAA	3 cut(s)	276, 389, 411
MslI	CAYNNNNRTG	2 cut(s)	129, 233
MspI	CCGG	2 cut(s)	5, 491
MspR9I	CCNGG	3 cut(s)	6, 174, 491
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	70
NciI	CCSGG	2 cut(s)	6, 491
NdeII	GATC	2 cut(s)	318, 406
NlaIII	CATG	3 cut(s)	73, 83, 130
NmuCI	GTSAC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	358
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	238, 482
PkrI	GCNGC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	406
RseI	CAYNNNNRTG	2 cut(s)	129, 233
SaqAI	TTAA	3 cut(s)	276, 389, 411
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	318, 406
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	3 cut(s)	6, 174, 491
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	3 cut(s)	226, 326, 471
SfaNI	GCATC	4 cut(s)	78, 178, 434, 482
SmiMI	CAYNNNNRTG	2 cut(s)	129, 233
Sse9I	AATT	1 cut(s)	278
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	301
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	3 cut(s)	4, 172, 489
TaaI	ACNGT	2 cut(s)	250, 375
TaqI	TCGA	1 cut(s)	334
TasI	AATT	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	238, 482
Tru1I	TTAA	3 cut(s)	276, 389, 411
Tru9I	TTAA	3 cut(s)	276, 389, 411
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	143, 465
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.