Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017796.1

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Reverse (-)

2440 .. 3165

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017796.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggagaagcatgggaaagctattcacaagaagatgactttccaaccagtaatagtatcccagattctctttcattggagaggtcttgcaccccacctggatcaatggaacttcagcatcagaagaataatgcggaagacagatcctcccaggtgcctgcgcatcctagaaatgaacctcaacgtacacgatgtttctagattgcctgcccatgcttcgtatccatactatatgccgagggttgtcaatcaggttatggggtcatcatcaactcaagtgtatcaaaagaatctgcacgacatgccaaatcatgccgcagcagcaattatgcaacattacagtcatcttccacactgccctccacatgttaatgggatgacttcattctcctactatccgcttagtatatgcttacaacctggtcagatgcctaacaatcattcatggccatcccttggaagctcatctgccagtgaagtgaaattaagtaaggttgacagaagagaggcagcattgattaaatttaggcagaaaagaaaggagcgttgctttgataaaaagatcaggtatgttaataaaaaaaaacttgccaaaaggaggcctcgtgtacggggacaatttgtgaggaaggtaaatggtgtagatgttgatctcaatgggcaacctgcttctcttgatgatgacgaggatgatgaggatgagaaggatgatgaggagcttgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

241

Amino Acids

27.93

Weight (kDa)

9.6

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	673
AccB1I	GGYRCC	1 cut(s)	153
AccB7I	CCANNNNNTGG	1 cut(s)	455
AciI	CCGC	3 cut(s)	133, 315, 398
AclWI	GGATC	2 cut(s)	108, 137
AcoI	YGGCCR	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	97
AfaI	GTAC	2 cut(s)	186, 609
AfiI	CCNNNNNNNGG	2 cut(s)	455, 597
AflIII	ACRYGT	1 cut(s)	364
AjnI	CCWGG	3 cut(s)	96, 149, 418
AluBI	AGCT	3 cut(s)	20, 462, 718
AluI	AGCT	3 cut(s)	20, 462, 718
AlwI	GGATC	2 cut(s)	108, 137
AoxI	GGCC	2 cut(s)	446, 599
ApeKI	GCWGC	3 cut(s)	317, 320, 509
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	162
BalI	TGGCCA	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	329, 332, 521
BccI	CCATC	1 cut(s)	457
BciT130I	CCWGG	3 cut(s)	98, 151, 420
BciVI	GTATCC	2 cut(s)	67, 231
BfaI	CTAG	2 cut(s)	167, 198
BfuAI	ACCTGC	1 cut(s)	673
BfuI	GTATCC	2 cut(s)	67, 231
BisI	GCNGC	4 cut(s)	315, 318, 321, 510
BlsI	GCNGC	4 cut(s)	316, 319, 322, 511
Bme1390I	CCNGG	3 cut(s)	98, 151, 420
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	3 cut(s)	98, 151, 420
BmsI	GCATC	3 cut(s)	126, 171, 417
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	149, 236, 454
BsaXI	ACNNNNNCTCC	5 cut(s)	130, 160, 589, 619, 707
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 597
Bse1I	ACTGG	2 cut(s)	47, 471
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	3 cut(s)	98, 151, 420
BseDI	CCNNGG	3 cut(s)	149, 236, 454
BseGI	GGATG	6 cut(s)	162, 381, 449, 694, 703, 712
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	455, 597
BseNI	ACTGG	2 cut(s)	47, 471
BseXI	GCAGC	3 cut(s)	329, 332, 521
BsgI	GTGCAG	1 cut(s)	278
BshFI	GGCC	2 cut(s)	448, 601
BshNI	GGYRCC	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	2 cut(s)	455, 597
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	2 cut(s)	448, 601
Bsp143I	GATC	4 cut(s)	100, 142, 561, 649
BspACI	CCGC	3 cut(s)	133, 315, 398
BspANI	GGCC	2 cut(s)	448, 601
BspLI	GGNNCC	1 cut(s)	155
BspMI	ACCTGC	1 cut(s)	673
BspPI	GGATC	2 cut(s)	108, 137
BspT107I	GGYRCC	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	47, 471
BssECI	CCNNGG	3 cut(s)	149, 236, 454
BssMI	GATC	4 cut(s)	100, 142, 561, 649
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	3 cut(s)	98, 151, 420
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstC8I	GCNNGC	3 cut(s)	158, 207, 720
BstDEI	CTNAG	1 cut(s)	401
BstF5I	GGATG	6 cut(s)	162, 381, 449, 694, 703, 712
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	4 cut(s)	103, 145, 564, 652
BstMBI	GATC	4 cut(s)	100, 142, 561, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 320
BstNI	CCWGG	3 cut(s)	98, 151, 420
BstNSI	RCATGY	2 cut(s)	304, 368
BstSCI	CCNGG	3 cut(s)	96, 149, 418
BstV1I	GCAGC	3 cut(s)	329, 332, 521
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	2 cut(s)	67, 231
BsuRI	GGCC	2 cut(s)	448, 601
BtsCI	GGATG	6 cut(s)	162, 381, 449, 694, 703, 712
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	352, 478
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	3 cut(s)	158, 207, 720
CfoI	GCGC	1 cut(s)	162
CsiI	ACCWGGT	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	185, 608
CviAII	CATG	6 cut(s)	11, 212, 301, 311, 365, 444
CviJI	RGCY	5 cut(s)	20, 448, 462, 601, 718
CviKI_1	RGCY	5 cut(s)	20, 448, 462, 601, 718
CviQI	GTAC	2 cut(s)	185, 608
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	4 cut(s)	102, 144, 563, 651
DpnII	GATC	4 cut(s)	100, 142, 561, 649
EaeI	YGGCCR	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	454
Eco147I	AGGCCT	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	97
EcoRII	CCWGG	3 cut(s)	96, 149, 418
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	6 cut(s)	14, 215, 304, 314, 368, 447
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	6 cut(s)	10, 211, 300, 310, 364, 443
Fnu4HI	GCNGC	4 cut(s)	315, 318, 321, 510
FokI	GGATG	6 cut(s)	149, 388, 436, 701, 710, 719
Fsp4HI	GCNGC	4 cut(s)	315, 318, 321, 510
FspBI	CTAG	2 cut(s)	167, 198
FspI	TGCGCA	1 cut(s)	161
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	4 cut(s)	315, 318, 321, 510
HaeIII	GGCC	2 cut(s)	448, 601
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	6 cut(s)	14, 215, 304, 314, 368, 447
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	2 cut(s)	64, 289
Hpy166II	GTNNAC	3 cut(s)	187, 496, 608
Hpy188I	TCNGA	2 cut(s)	122, 426
Hpy188III	TCNNGA	2 cut(s)	198, 674
Hpy8I	GTNNAC	3 cut(s)	187, 496, 608
HpyAV	CCTTC	2 cut(s)	622, 697
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	89, 295, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 320
HpyF3I	CTNAG	1 cut(s)	401
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	6 cut(s)	14, 215, 304, 314, 368, 447
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	100, 142, 561, 649
LmnI	GCTCC	2 cut(s)	541, 715
Lsp1109I	GCAGC	3 cut(s)	329, 332, 521
LweI	GCATC	3 cut(s)	126, 171, 417
MabI	ACCWGGT	1 cut(s)	418
MaeI	CTAG	2 cut(s)	167, 198
MaeII	ACGT	1 cut(s)	183
MalI	GATC	4 cut(s)	102, 144, 563, 651
MboI	GATC	4 cut(s)	100, 142, 561, 649
MboII	GAAGA	5 cut(s)	43, 135, 148, 338, 513
MflI	RGATCY	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	448
MluCI	AATT	4 cut(s)	324, 482, 521, 617
MluNI	TGGCCA	1 cut(s)	448
MmeI	TCCRAC	1 cut(s)	67
Mox20I	TGGCCA	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	448
MseI	TTAA	4 cut(s)	369, 485, 519, 573
MslI	CAYNNNNRTG	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	448
MspR9I	CCNGG	3 cut(s)	98, 151, 420
MvaI	CCWGG	3 cut(s)	98, 151, 420
MwoI	GCNNNNNNNGC	2 cut(s)	301, 320
NdeII	GATC	4 cut(s)	100, 142, 561, 649
NlaIII	CATG	6 cut(s)	14, 215, 304, 314, 368, 447
NlaIV	GGNNCC	1 cut(s)	155
NmeAIII	GCCGAG	1 cut(s)	261
NsbI	TGCGCA	1 cut(s)	161
NspI	RCATGY	2 cut(s)	304, 368
PceI	AGGCCT	1 cut(s)	601
PciI	ACATGT	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	64, 289
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	4 cut(s)	316, 319, 322, 511
PscI	ACATGT	1 cut(s)	364
Psp6I	CCWGG	3 cut(s)	96, 149, 418
PspGI	CCWGG	3 cut(s)	96, 149, 418
PspN4I	GGNNCC	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	2 cut(s)	186, 609
RsaNI	GTAC	2 cut(s)	185, 608
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	4 cut(s)	369, 485, 519, 573
SatI	GCNGC	4 cut(s)	315, 318, 321, 510
Sau3AI	GATC	4 cut(s)	100, 142, 561, 649
ScrFI	CCNGG	3 cut(s)	98, 151, 420
SexAI	ACCWGGT	1 cut(s)	418
SfaNI	GCATC	3 cut(s)	126, 171, 417
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	4 cut(s)	324, 482, 521, 617
SseBI	AGGCCT	1 cut(s)	601
SsiI	CCGC	3 cut(s)	133, 315, 398
SspMI	CTAG	2 cut(s)	167, 198
StuI	AGGCCT	1 cut(s)	601
StyD4I	CCNGG	3 cut(s)	96, 149, 418
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	186
TasI	AATT	4 cut(s)	324, 482, 521, 617
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	64, 289
Tru1I	TTAA	4 cut(s)	369, 485, 519, 573
Tru9I	TTAA	4 cut(s)	369, 485, 519, 573
TscAI	CASTG	2 cut(s)	359, 478
TseI	GCWGC	3 cut(s)	317, 320, 509
TspDTI	ATGAA	4 cut(s)	62, 188, 372, 432
TspRI	CASTG	2 cut(s)	359, 478
Van91I	CCANNNNNTGG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	521
XbaI	TCTAGA	1 cut(s)	197
XceI	RCATGY	2 cut(s)	304, 368
XspI	CTAG	2 cut(s)	167, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.