Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000297.1

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Forward (+)

20841 .. 22531

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000297.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgcaaatggagaagcatgggaaagctattcacaagaagatgactttccaaccagtaatagtatcccagattctctttcattggagaggtcttgcacctcacctggatcaatggaacttcagcatcagaagaataatgcggaagacagatcctcccaggtgcctgcgcatcctagaaatgaacctcaacgtacacgatgtttctagattgcctgcccatgcttcgtatccatactatatgccgggggttgtcaatcaggttatggggtcatcatcaactcaagtgtgtcaaaagaatctgcacgacatgccaaatcatgccgcagcagcaattatgcaacatttcagtcatcttccacactgccctccacatgataatgggatgactccattctcctattatccgcttagtatatgcttacaacatggtcaaatgcctaacaatcattcatggccatcctttggaagctcatcctccagcgaagtgaaattaaataaggttgacagaagagaggcagcattgattaaatttaggcagaaaagaaaggagcgttgctttgataaaaagatcagtgtcctgagtgtagggatgacaaaaatccccagcggggcggagctccattggatacccgcccctaatggggggagaattcggagacaaatggggaatggggatggggatccccaatccccgctatctaagattggggatggggcggggatggtattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

243

Amino Acids

27.45

Weight (kDa)

9.87

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	159
AccB7I	CCANNNNNTGG	1 cut(s)	461
AciI	CCGC	8 cut(s)	139, 321, 404, 606, 611, 630, 692, 716
AclWI	GGATC	4 cut(s)	114, 143, 674, 687
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	2 cut(s)	527, 648
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	5 cut(s)	461, 607, 639, 640, 641
AjnI	CCWGG	2 cut(s)	102, 155
AluBI	AGCT	3 cut(s)	26, 468, 616
AluI	AGCT	3 cut(s)	26, 468, 616
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	649
AlwI	GGATC	4 cut(s)	114, 143, 674, 687
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	3 cut(s)	323, 326, 515
ApoI	RAATTY	2 cut(s)	527, 648
AspLEI	GCGC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	454
BamHI	GGATCC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	3 cut(s)	335, 338, 527
BccI	CCATC	4 cut(s)	463, 668, 704, 715
BciT130I	CCWGG	2 cut(s)	104, 157
BciVI	GTATCC	3 cut(s)	73, 237, 618
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	2 cut(s)	173, 204
BfuI	GTATCC	3 cut(s)	73, 237, 618
BisI	GCNGC	4 cut(s)	321, 324, 327, 516
BlsI	GCNGC	4 cut(s)	322, 325, 328, 517
Bme1390I	CCNGG	3 cut(s)	104, 157, 243
BmiI	GGNNCC	2 cut(s)	161, 681
BmrFI	CCNGG	3 cut(s)	104, 157, 243
BmsI	GCATC	2 cut(s)	132, 177
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	155, 242
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	5 cut(s)	461, 607, 639, 640, 641
Bse1I	ACTGG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	678
BseBI	CCWGG	2 cut(s)	104, 157
BseDI	CCNNGG	2 cut(s)	155, 242
BseGI	GGATG	8 cut(s)	168, 387, 455, 470, 594, 679, 715, 726
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	5 cut(s)	461, 607, 639, 640, 641
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	335, 338, 527
BseYI	CCCAGC	1 cut(s)	602
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	5 cut(s)	461, 607, 639, 640, 641
BsmAI	GTCTC	1 cut(s)	649
BsnI	GGCC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	106, 148, 567, 679
BspACI	CCGC	8 cut(s)	139, 321, 404, 606, 611, 630, 692, 716
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	161, 681
BspPI	GGATC	4 cut(s)	114, 143, 674, 687
BspT107I	GGYRCC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	155, 242
BssMI	GATC	4 cut(s)	106, 148, 567, 679
Bst2UI	CCWGG	2 cut(s)	104, 157
Bst6I	CTCTTC	1 cut(s)	502
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	164, 213
BstDEI	CTNAG	3 cut(s)	407, 578, 699
BstF5I	GGATG	8 cut(s)	168, 387, 455, 470, 594, 679, 715, 726
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	4 cut(s)	109, 151, 570, 682
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	4 cut(s)	106, 148, 567, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 326
BstNI	CCWGG	2 cut(s)	104, 157
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	102, 155, 241
BstV1I	GCAGC	3 cut(s)	335, 338, 527
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	148, 679
BstYI	RGATCY	2 cut(s)	148, 679
BsuI	GTATCC	3 cut(s)	73, 237, 618
BsuRI	GGCC	1 cut(s)	454
BtsCI	GGATG	8 cut(s)	168, 387, 455, 470, 594, 679, 715, 726
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	358, 577
Cac8I	GCNNGC	2 cut(s)	164, 213
CfoI	GCGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	7 cut(s)	17, 218, 307, 317, 371, 425, 450
CviJI	RGCY	4 cut(s)	26, 454, 468, 616
CviKI_1	RGCY	4 cut(s)	26, 454, 468, 616
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	3 cut(s)	407, 578, 699
DpnI	GATC	4 cut(s)	108, 150, 569, 681
DpnII	GATC	4 cut(s)	106, 148, 567, 679
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	626
Ecl136II	GAGCTC	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	618
Eco53kI	GAGCTC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	616
EcoRI	GAATTC	1 cut(s)	648
EcoRII	CCWGG	2 cut(s)	102, 155
EcoT38I	GRGCYC	1 cut(s)	618
FaeI	CATG	7 cut(s)	20, 221, 310, 320, 374, 428, 453
FatI	CATG	7 cut(s)	16, 217, 306, 316, 370, 424, 449
FauI	CCCGC	4 cut(s)	599, 637, 699, 709
Fnu4HI	GCNGC	4 cut(s)	321, 324, 327, 516
FokI	GGATG	7 cut(s)	155, 394, 442, 457, 601, 686, 722
FriOI	GRGCYC	1 cut(s)	618
Fsp4HI	GCNGC	4 cut(s)	321, 324, 327, 516
FspBI	CTAG	2 cut(s)	173, 204
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	4 cut(s)	321, 324, 327, 516
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	7 cut(s)	20, 221, 310, 320, 374, 428, 453
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	3 cut(s)	70, 295, 385
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	193, 502
Hpy188I	TCNGA	2 cut(s)	128, 654
Hpy188III	TCNNGA	2 cut(s)	204, 577
Hpy8I	GTNNAC	2 cut(s)	193, 502
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	4, 95, 301, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 326
HpyF3I	CTNAG	3 cut(s)	407, 578, 699
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	7 cut(s)	20, 221, 310, 320, 374, 428, 453
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	106, 148, 567, 679
LmnI	GCTCC	3 cut(s)	547, 613, 621
Lsp1109I	GCAGC	3 cut(s)	335, 338, 527
LweI	GCATC	2 cut(s)	132, 177
MaeI	CTAG	2 cut(s)	173, 204
MaeII	ACGT	1 cut(s)	189
MalI	GATC	4 cut(s)	108, 150, 569, 681
MboI	GATC	4 cut(s)	106, 148, 567, 679
MboII	GAAGA	5 cut(s)	49, 141, 154, 344, 519
MflI	RGATCY	2 cut(s)	148, 679
MhlI	GDGCHC	1 cut(s)	618
MlsI	TGGCCA	1 cut(s)	454
MluCI	AATT	4 cut(s)	330, 488, 527, 648
MluNI	TGGCCA	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	80, 108, 162, 194, 375, 484, 505
Mox20I	TGGCCA	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	454
MseI	TTAA	2 cut(s)	491, 525
MslI	CAYNNNNRTG	1 cut(s)	375
Msp20I	TGGCCA	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	606
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	3 cut(s)	104, 157, 243
MvaI	CCWGG	2 cut(s)	104, 157
MwoI	GCNNNNNNNGC	2 cut(s)	307, 326
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	4 cut(s)	106, 148, 567, 679
NlaIII	CATG	7 cut(s)	20, 221, 310, 320, 374, 428, 453
NlaIV	GGNNCC	2 cut(s)	161, 681
NsbI	TGCGCA	1 cut(s)	167
NspI	RCATGY	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	70, 295
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	4 cut(s)	322, 325, 328, 517
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	618
Psp6I	CCWGG	2 cut(s)	102, 155
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	2 cut(s)	102, 155
PspN4I	GGNNCC	2 cut(s)	161, 681
PsuI	RGATCY	2 cut(s)	148, 679
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	491, 525
SatI	GCNGC	4 cut(s)	321, 324, 327, 516
Sau3AI	GATC	4 cut(s)	106, 148, 567, 679
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	3 cut(s)	104, 157, 243
SduI	GDGCHC	1 cut(s)	618
SfaNI	GCATC	2 cut(s)	132, 177
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	4 cut(s)	330, 488, 527, 648
SsiI	CCGC	8 cut(s)	139, 321, 404, 606, 611, 630, 692, 716
SspMI	CTAG	2 cut(s)	173, 204
SstI	GAGCTC	1 cut(s)	618
StyD4I	CCNGG	3 cut(s)	102, 155, 241
TaiI	ACGT	1 cut(s)	192
TasI	AATT	4 cut(s)	330, 488, 527, 648
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	70, 295
Tru1I	TTAA	2 cut(s)	491, 525
Tru9I	TTAA	2 cut(s)	491, 525
TscAI	CASTG	2 cut(s)	365, 577
TseI	GCWGC	3 cut(s)	323, 326, 515
TspDTI	ATGAA	3 cut(s)	68, 194, 438
TspRI	CASTG	2 cut(s)	365, 577
Van91I	CCANNNNNTGG	1 cut(s)	461
XapI	RAATTY	2 cut(s)	527, 648
XbaI	TCTAGA	1 cut(s)	203
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	2 cut(s)	173, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.