Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8226389.1

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Reverse (-)

174 .. 668

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8226389.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgccgagggttgtcaatcaggttatggggtcatcatcaactcaagtgtatcaaaagaatctgcacgacatgccaaatcatgctgcagcagcaattatgcaacattacagtcatcttccacactgccctccacatgttaatgggatgacttcattctcctactatccgcttagtatatgcttacaacctggtcagatgcctaacaatcattcatggccatcccttggaagctcatctgccagtgaagtgaaattaagtaaggttgacagaagagaggcagcattgattaaatttaggcagaaaagaaaggagcgttgctttgataaaaagattaggtatgttaatcgaaaaagacttgctgaaaggaggcctcgtgtacggggacaatttgtgaggaaggtaaatggtgtagatgttgatctcaatgggcaacctgcttctcttgatgatgacgaggatgatgaggatgagaaggatgatgaggagcttgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

164

Amino Acids

18.77

Weight (kDa)

8.78

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	224
AciI	CCGC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	231, 487
AluI	AGCT	2 cut(s)	231, 487
AoxI	GGCC	2 cut(s)	215, 368
ApeKI	GCWGC	4 cut(s)	83, 86, 89, 278
ApoI	RAATTY	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	217
BauI	CACGAG	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	70, 98, 101, 290
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	4 cut(s)	84, 87, 90, 279
BlsI	GCNGC	4 cut(s)	85, 88, 91, 280
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	5, 223
BsaXI	ACNNNNNCTCC	3 cut(s)	358, 388, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	5, 223
BseGI	GGATG	5 cut(s)	150, 218, 463, 472, 481
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	240
BseXI	GCAGC	4 cut(s)	70, 98, 101, 290
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	217, 370
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	217, 370
Bsp143I	GATC	1 cut(s)	418
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	217, 370
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	5, 223
BssMI	GATC	1 cut(s)	418
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	5 cut(s)	150, 218, 463, 472, 481
BstKTI	GATC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 89
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	2 cut(s)	73, 137
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	4 cut(s)	70, 98, 101, 290
BsuRI	GGCC	2 cut(s)	217, 370
BtsCI	GGATG	5 cut(s)	150, 218, 463, 472, 481
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	121, 247
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	489
CsiI	ACCWGGT	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	4 cut(s)	70, 80, 134, 213
CviJI	RGCY	4 cut(s)	217, 231, 370, 487
CviKI_1	RGCY	4 cut(s)	217, 231, 370, 487
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	223
Eco147I	AGGCCT	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	4 cut(s)	73, 83, 137, 216
FaiI	YATR	9 cut(s)	26, 71, 81, 98, 135, 176, 178, 214, 339
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	4 cut(s)	69, 79, 133, 212
Fnu4HI	GCNGC	4 cut(s)	84, 87, 90, 279
FokI	GGATG	5 cut(s)	157, 205, 470, 479, 488
Fsp4HI	GCNGC	4 cut(s)	84, 87, 90, 279
GluI	GCNGC	4 cut(s)	84, 87, 90, 279
HaeIII	GGCC	2 cut(s)	217, 370
Hin1II	CATG	4 cut(s)	73, 83, 137, 216
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	265, 377
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	2 cut(s)	265, 377
HpyAV	CCTTC	2 cut(s)	391, 466
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	64, 86, 100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 89
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	4 cut(s)	73, 83, 137, 216
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	2 cut(s)	310, 484
LpnPI	CCDG	5 cut(s)	5, 174, 201, 253, 447
Lsp1109I	GCAGC	4 cut(s)	70, 98, 101, 290
LweI	GCATC	1 cut(s)	186
MabI	ACCWGGT	1 cut(s)	187
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	2 cut(s)	107, 282
MlsI	TGGCCA	1 cut(s)	217
MluCI	AATT	4 cut(s)	93, 251, 290, 386
MluNI	TGGCCA	1 cut(s)	217
MnlI	CCTC	8 cut(s)	138, 268, 360, 381, 387, 448, 457, 475
Mox20I	TGGCCA	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	217
MseI	TTAA	4 cut(s)	138, 254, 288, 342
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	70, 89
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	4 cut(s)	73, 83, 137, 216
NmeAIII	GCCGAG	1 cut(s)	30
NspI	RCATGY	2 cut(s)	73, 137
PceI	AGGCCT	1 cut(s)	370
PciI	ACATGT	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	85, 88, 91, 280
PscI	ACATGT	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	138, 254, 288, 342
SatI	GCNGC	4 cut(s)	84, 87, 90, 279
Sau3AI	GATC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	8 cut(s)	24, 190, 233, 264, 338, 402, 436, 489
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	4 cut(s)	93, 251, 290, 386
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	346
TasI	AATT	4 cut(s)	93, 251, 290, 386
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	4 cut(s)	138, 254, 288, 342
Tru9I	TTAA	4 cut(s)	138, 254, 288, 342
TscAI	CASTG	2 cut(s)	128, 247
TseI	GCWGC	4 cut(s)	83, 86, 89, 278
TspDTI	ATGAA	2 cut(s)	141, 201
TspRI	CASTG	2 cut(s)	128, 247
Van91I	CCANNNNNTGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	2 cut(s)	73, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.