Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00014

Orthogroup ID

OG0005778

Physical Location & Seq

Genomic Coordinates Reverse (-)

46981 .. 49257

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACTTTGATACAGTTGTATCAGATCCTAGTGATCCTACTACAAACCATTCTCCTGGATGATACAGAAGAGAAGTCTCAGAAGAGTGCCAATCCAGAGATACCTGTTTCTGCTGCCACGGAGCCTCCACTGGATGATCAATTAGAGTTTCAGAGTGATGTTCCAGAAATAAGTGACCGCCAAACTGGAAAGTTTTCATCTGGCCCAAAAAAGAGCGAACTAAAGATTGGGGGGTCATCTGCCTTCTTTACCTATGTCAAATCAAGCACAATTGAAAACAACTCCCAAGTCCATACAAAGGATAATGGTGCTGAACGGTCAAGAGTGGAAGGGAAACATCCAGCATGTAGTCAACAAATGGTTGATGAGTCTCTCCAAGTAGATGGAAATGGAGAAGCATGGGAAAGCTATTCACAAGAAGATGACTTTCCAACCAGTAATAGTATCCCAGATTCTCTTTCATTGGAGAGGTCTTGCACCCCACCTGGTTCAATGGAACTTCAGCATCAGAAGAATCATGCGGAAGACAGATCCTCTCAGGTGCCTGCGCATCCTAGAAATGAACCTCAACATGAGTTTCTAGATTGCCTGCCCATGCTTCGTATCCATACTATATGCCGAGGGTTGTCAATCAGGTTATGGGGTCATCATCAACTCAAGTGTATCAAAAGAATCTGCACGACATGCCAAATCATGCCGCAGCAGCAATTATGCAACATTACAGTCATCTTCCACACTGCCCTCCACATGTTAATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

253

Amino Acids

28.38

Weight (kDa)

5.42

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61380
fragaria_vesca	FvH4_5g14560
malus_domestica	MD06G1197300.v1.1 MD14G1204700.v1.1
prunus_persica	Prupe.5G197900_v2.0.a1 Prupe.5G198000_v2.0.a1
pyrus_communis	pycom06g17420 pycom06g17430 pycom14g16910
rosa_chinensis	RchiOBHm_Chr7g0182001
rosa_laevigata	RLG00000005156 RLG00000005161
rosa_multiflora	Rmu_co8226389.1_g000001 Rmu_sc0003511.1_g000044 Rmu_sc0017796.1_g000001 Rmu_ssc0000297.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271630
rosa_rugosa	Rorug06G0445000 Rorug06G0445100 Rorug06G0445300
rosa_samantha	Rh7AG047400 Rh7BG047400 Rh7BG047500 Rh7CG047700 Rh7DG046700
rosa_wichuraiana	Rw0G000460 Rw0G019690 Rw7G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	549
AccB1I	GGYRCC	1 cut(s)	541
AciI	CCGC	3 cut(s)	178, 521, 698
AclWI	GGATC	3 cut(s)	19, 28, 525
AcuI	CTGAAG	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	2 cut(s)	275, 492
AjnI	CCWGG	2 cut(s)	54, 484
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw26I	GTCTC	2 cut(s)	81, 375
AlwI	GGATC	3 cut(s)	19, 28, 525
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	113, 700, 703
Asp700I	GAANNNNTTC	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	203
BaeI	ACNNNNGTAYC	2 cut(s)	35, 35
BanI	GGYRCC	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	100, 712, 715
BccI	CCATC	1 cut(s)	377
BciT130I	CCWGG	2 cut(s)	56, 486
BciVI	GTATCC	2 cut(s)	455, 614
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	81, 375
BfaI	CTAG	3 cut(s)	29, 555, 581
BfuI	GTATCC	2 cut(s)	455, 614
BisI	GCNGC	4 cut(s)	114, 698, 701, 704
BlsI	GCNGC	4 cut(s)	115, 699, 702, 705
Bme1390I	CCNGG	2 cut(s)	56, 486
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	2 cut(s)	123, 543
BmrFI	CCNGG	2 cut(s)	56, 486
BmsI	GCATC	2 cut(s)	514, 559
BpiI	GAAGAC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	641
BsaJI	CCNNGG	2 cut(s)	117, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	3 cut(s)	135, 190, 435
BseBI	CCWGG	2 cut(s)	56, 486
BseDI	CCNNGG	2 cut(s)	117, 619
BseGI	GGATG	4 cut(s)	64, 139, 337, 550
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	92, 551
BseNI	ACTGG	3 cut(s)	135, 190, 435
BseXI	GCAGC	3 cut(s)	100, 712, 715
BsgI	GTGCAG	1 cut(s)	661
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	81, 375
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	24, 33, 136, 530
BspACI	CCGC	3 cut(s)	178, 521, 698
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	91, 550
BspLI	GGNNCC	2 cut(s)	123, 543
BspPI	GGATC	3 cut(s)	19, 28, 525
BspT107I	GGYRCC	1 cut(s)	541
BsrI	ACTGG	3 cut(s)	135, 190, 435
BssECI	CCNNGG	2 cut(s)	117, 619
BssMI	GATC	4 cut(s)	24, 33, 136, 530
Bst2UI	CCWGG	2 cut(s)	56, 486
Bst4CI	ACNGT	3 cut(s)	15, 318, 724
Bst6I	CTCTTC	2 cut(s)	63, 77
BstAPI	GCANNNNNTGC	1 cut(s)	684
BstC8I	GCNNGC	2 cut(s)	546, 590
BstDEI	CTNAG	2 cut(s)	78, 537
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	4 cut(s)	64, 139, 337, 550
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	4 cut(s)	27, 36, 139, 533
BstMAI	GTCTC	2 cut(s)	81, 375
BstMBI	GATC	4 cut(s)	24, 33, 136, 530
BstMWI	GCNNNNNNNGC	2 cut(s)	684, 703
BstNI	CCWGG	2 cut(s)	56, 486
BstNSI	RCATGY	3 cut(s)	348, 687, 751
BstSCI	CCNGG	2 cut(s)	54, 484
BstV1I	GCAGC	3 cut(s)	100, 712, 715
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	2 cut(s)	24, 530
BstXI	CCANNNNNNTGG	2 cut(s)	55, 383
BstYI	RGATCY	2 cut(s)	24, 530
BsuI	GTATCC	2 cut(s)	455, 614
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	4 cut(s)	64, 139, 337, 550
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	2 cut(s)	128, 735
Cac8I	GCNNGC	2 cut(s)	546, 590
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	203
CsiI	ACCWGGT	1 cut(s)	484
CviAII	CATG	8 cut(s)	345, 399, 518, 572, 595, 684, 694, 748
CviJI	RGCY	3 cut(s)	124, 204, 408
CviKI_1	RGCY	3 cut(s)	124, 204, 408
DdeI	CTNAG	2 cut(s)	78, 537
DpnI	GATC	4 cut(s)	26, 35, 138, 532
DpnII	GATC	4 cut(s)	24, 33, 136, 530
Eam1104I	CTCTTC	2 cut(s)	63, 77
EarI	CTCTTC	2 cut(s)	63, 77
Eco57I	CTGAAG	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	54, 484
FaeI	CATG	8 cut(s)	348, 402, 521, 575, 598, 687, 697, 751
FatI	CATG	8 cut(s)	344, 398, 517, 571, 594, 683, 693, 747
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	4 cut(s)	114, 698, 701, 704
FokI	GGATG	4 cut(s)	71, 146, 324, 537
Fsp4HI	GCNGC	4 cut(s)	114, 698, 701, 704
FspBI	CTAG	3 cut(s)	29, 555, 581
FspI	TGCGCA	1 cut(s)	549
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	4 cut(s)	114, 698, 701, 704
HaeIII	GGCC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	8 cut(s)	348, 402, 521, 575, 598, 687, 697, 751
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	4 cut(s)	368, 452, 514, 672
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	4 cut(s)	24, 81, 153, 510
Hpy188III	TCNNGA	4 cut(s)	95, 164, 321, 581
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	253, 323
HpyCH4III	ACNGT	3 cut(s)	15, 318, 724
HpyCH4V	TGCA	3 cut(s)	477, 678, 714
HpyF10VI	GCNNNNNNNGC	2 cut(s)	684, 703
HpyF3I	CTNAG	2 cut(s)	78, 537
Hsp92II	CATG	8 cut(s)	348, 402, 521, 575, 598, 687, 697, 751
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	24, 33, 136, 530
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	3 cut(s)	100, 712, 715
LweI	GCATC	2 cut(s)	514, 559
MabI	ACCWGGT	1 cut(s)	484
MaeI	CTAG	3 cut(s)	29, 555, 581
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	4 cut(s)	26, 35, 138, 532
MboI	GATC	4 cut(s)	24, 33, 136, 530
MboII	GAAGA	6 cut(s)	80, 94, 431, 523, 536, 721
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	2 cut(s)	24, 530
MluCI	AATT	3 cut(s)	140, 270, 707
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	6 cut(s)	135, 462, 544, 576, 614, 752
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	1 cut(s)	752
MslI	CAYNNNNRTG	1 cut(s)	752
MspR9I	CCNGG	2 cut(s)	56, 486
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	2 cut(s)	56, 486
MwoI	GCNNNNNNNGC	2 cut(s)	684, 703
NdeII	GATC	4 cut(s)	24, 33, 136, 530
NlaIII	CATG	8 cut(s)	348, 402, 521, 575, 598, 687, 697, 751
NlaIV	GGNNCC	2 cut(s)	123, 543
NmeAIII	GCCGAG	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	173
NsbI	TGCGCA	1 cut(s)	549
NspI	RCATGY	3 cut(s)	348, 687, 751
PciI	ACATGT	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	193
PfeI	GAWTC	3 cut(s)	452, 514, 672
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	115, 699, 702, 705
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PscI	ACATGT	1 cut(s)	747
Psp6I	CCWGG	2 cut(s)	54, 484
PspGI	CCWGG	2 cut(s)	54, 484
PspN4I	GGNNCC	2 cut(s)	123, 543
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	24, 530
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	1 cut(s)	752
SatI	GCNGC	4 cut(s)	114, 698, 701, 704
Sau3AI	GATC	4 cut(s)	24, 33, 136, 530
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	56, 486
SetI	ASST	8 cut(s)	106, 254, 410, 473, 487, 543, 568, 638
SexAI	ACCWGGT	1 cut(s)	484
SfaNI	GCATC	2 cut(s)	514, 559
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	3 cut(s)	140, 270, 707
SsiI	CCGC	3 cut(s)	178, 521, 698
SspMI	CTAG	3 cut(s)	29, 555, 581
StyD4I	CCNGG	2 cut(s)	54, 484
TaaI	ACNGT	3 cut(s)	15, 318, 724
TasI	AATT	3 cut(s)	140, 270, 707
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	3 cut(s)	452, 514, 672
Tru1I	TTAA	1 cut(s)	752
Tru9I	TTAA	1 cut(s)	752
TscAI	CASTG	2 cut(s)	135, 742
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	113, 700, 703
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	186, 450, 576
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	135, 742
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	3 cut(s)	348, 687, 751
XmnI	GAANNNNTTC	1 cut(s)	193
XspI	CTAG	3 cut(s)	29, 555, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.